RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 KDM5AP29375 1690 aaKnown RBP34.3■■■■□ 3.08
ATPAF1-213ENST00000574428 STAC3Q96MF2 364 aa34.27■■■■□ 3.08
ATPAF1-213ENST00000574428 NUTM2DQ5VT03 806 aaPredicted RBP34.26■■■■□ 3.08
ATPAF1-213ENST00000574428 ADGRF5Q8IZF2 1346 aa34.26■■■■□ 3.08
ATPAF1-213ENST00000574428 CEP170BQ9Y4F5 1589 aaPredicted RBP34.24■■■■□ 3.07
ATPAF1-213ENST00000574428 RALGAPBQ86X10 1494 aa34.22■■■■□ 3.07
ATPAF1-213ENST00000574428 NRXN1Q9ULB1 1477 aa34.22■■■■□ 3.07
ATPAF1-213ENST00000574428 TRPM1Q7Z4N2 1603 aa34.22■■■■□ 3.07
ATPAF1-213ENST00000574428 RIMS2Q9UQ26 1411 aa34.22■■■■□ 3.07
ATPAF1-213ENST00000574428 ZNF142P52746 1687 aaPredicted RBP34.19■■■■□ 3.06
ATPAF1-213ENST00000574428 ZFYVE9O95405 1425 aa34.19■■■■□ 3.06
ATPAF1-213ENST00000574428 VGFO15240 615 aaPredicted RBP34.18■■■■□ 3.06
ATPAF1-213ENST00000574428 SETD1BQ9UPS6 1966 aaKnown RBP34.18■■■■□ 3.06
ATPAF1-213ENST00000574428 TMEM2Q9UHN6 1383 aa34.17■■■■□ 3.06
ATPAF1-213ENST00000574428 PIK3C2GO75747 1445 aa34.16■■■■□ 3.06
ATPAF1-213ENST00000574428 ROCK2O75116 1388 aaKnown RBP34.13■■■■□ 3.05
ATPAF1-213ENST00000574428 NBPF1Q3BBV0 1214 aa34.12■■■■□ 3.05
ATPAF1-213ENST00000574428 THEMISQ8N1K5 641 aaPredicted RBP34.12■■■■□ 3.05
ATPAF1-213ENST00000574428 SENP3Q9H4L4 574 aaPredicted RBP34.11■■■■□ 3.05
ATPAF1-213ENST00000574428 SLIT1O75093 1534 aa34.09■■■■□ 3.05
ATPAF1-213ENST00000574428 KIAA1210Q9ULL0 1709 aa34.09■■■■□ 3.05
ATPAF1-213ENST00000574428 CFAP70Q5T0N1 1121 aa34.08■■■■□ 3.05
ATPAF1-213ENST00000574428 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.08■■■■□ 3.05
ATPAF1-213ENST00000574428 ARHGAP23Q9P227 1491 aa34.08■■■■□ 3.05
ATPAF1-213ENST00000574428 CARD11Q9BXL7 1154 aa34.06■■■■□ 3.04
ATPAF1-213ENST00000574428 HDGFP51858 240 aaKnown RBP34.05■■■■□ 3.04
ATPAF1-213ENST00000574428 GPRASP1Q5JY77 1395 aa34.04■■■■□ 3.04
ATPAF1-213ENST00000574428 LTKP29376 864 aa34.03■■■■□ 3.04
ATPAF1-213ENST00000574428 C14orf93Q9H972 538 aaKnown RBP34.02■■■■□ 3.04
ATPAF1-213ENST00000574428 TXNDC2Q86VQ3 553 aa34.01■■■■□ 3.04
ATPAF1-213ENST00000574428 LAMC1P11047 1609 aa34.01■■■■□ 3.03
ATPAF1-213ENST00000574428 EID1Q9Y6B2 187 aa34■■■■□ 3.03
ATPAF1-213ENST00000574428 HIRIP3Q9BW71 556 aaPredicted RBP33.99■■■■□ 3.03
ATPAF1-213ENST00000574428 EIF4G2P78344 907 aaKnown RBP eCLIP33.98■■■■□ 3.03
ATPAF1-213ENST00000574428 USP47Q96K76 1375 aa33.98■■■■□ 3.03
ATPAF1-213ENST00000574428 HSPA5P11021 654 aaKnown RBP33.97■■■■□ 3.03
ATPAF1-213ENST00000574428 NRXN3Q9Y4C0 1643 aa33.97■■■■□ 3.03
ATPAF1-213ENST00000574428 SETBP1Q9Y6X0 1596 aa33.96■■■■□ 3.03
ATPAF1-213ENST00000574428 SCAF11Q99590 1463 aaKnown RBP33.96■■■■□ 3.03
ATPAF1-213ENST00000574428 ALKQ9UM73 1620 aa33.96■■■■□ 3.03
ATPAF1-213ENST00000574428 IQGAP1P46940 1657 aa33.95■■■■□ 3.03
ATPAF1-213ENST00000574428 ZNF316A6NFI3 1004 aaPredicted RBP33.95■■■■□ 3.02
ATPAF1-213ENST00000574428 ADGRB1O14514 1584 aa33.94■■■■□ 3.02
ATPAF1-213ENST00000574428 PLEKHG1Q9ULL1 1385 aa33.94■■■■□ 3.02
ATPAF1-213ENST00000574428 TMEM132EQ6IEE7 984 aa33.92■■■■□ 3.02
ATPAF1-213ENST00000574428 BCANQ96GW7 911 aa33.92■■■■□ 3.02
ATPAF1-213ENST00000574428 ASXL1Q8IXJ9 1541 aa33.91■■■■□ 3.02
ATPAF1-213ENST00000574428 SETD1AO15047 1707 aaKnown RBP33.89■■■■□ 3.02
ATPAF1-213ENST00000574428 ANKLE2Q86XL3 938 aa33.88■■■■□ 3.01
ATPAF1-213ENST00000574428 LMTK3Q96Q04 1460 aa33.85■■■■□ 3.01
ATPAF1-213ENST00000574428 ADAMTS13Q76LX8 1427 aa33.85■■■■□ 3.01
ATPAF1-213ENST00000574428 ST20-MTHFSA0A0A6YYL1 179 aa33.81■■■■□ 3
ATPAF1-213ENST00000574428 POLR1AO95602 1720 aaPredicted RBP33.81■■■■□ 3
ATPAF1-213ENST00000574428 HSPA2P54652 639 aa33.8■■■■□ 3
ATPAF1-213ENST00000574428 SLC26A8Q96RN1 970 aa33.8■■■■□ 3
ATPAF1-213ENST00000574428 METP08581 1390 aa33.8■■■■□ 3
ATPAF1-213ENST00000574428 MED14O60244 1454 aa33.78■■■■□ 3
ATPAF1-213ENST00000574428 TRAK1Q9UPV9 953 aa33.78■■■■□ 3
ATPAF1-213ENST00000574428 NCKAP5LQ9HCH0 1330 aa33.77■■■■□ 3
ATPAF1-213ENST00000574428 YTHDC2Q9H6S0 1430 aaKnown RBP33.77■■■■□ 3
ATPAF1-213ENST00000574428 EIF3AQ14152 1382 aaKnown RBP33.76■■■■□ 3
ATPAF1-213ENST00000574428 STK26Q9P289 416 aa33.76■■■■□ 3
ATPAF1-213ENST00000574428 DIP2AQ14689 1571 aa33.74■■■□□ 2.99
ATPAF1-213ENST00000574428 NPHP4O75161 1426 aaPredicted RBP33.73■■■□□ 2.99
ATPAF1-213ENST00000574428 ARHGEF28Q8N1W1 1705 aaKnown RBP33.71■■■□□ 2.99
ATPAF1-213ENST00000574428 LRPPRCP42704 1394 aaKnown RBP33.7■■■□□ 2.99
ATPAF1-213ENST00000574428 TBX22Q9Y458 520 aa33.7■■■□□ 2.99
ATPAF1-213ENST00000574428 C11orf95C9JLR9 678 aaPredicted RBP33.66■■■□□ 2.98
ATPAF1-213ENST00000574428 TESK2Q96S53 571 aa33.66■■■□□ 2.98
ATPAF1-213ENST00000574428 CENPJQ9HC77 1338 aaPredicted RBP33.64■■■□□ 2.98
ATPAF1-213ENST00000574428 PTPRUQ92729 1446 aa33.63■■■□□ 2.97
ATPAF1-213ENST00000574428 ABCC11Q96J66 1382 aa33.63■■■□□ 2.97
ATPAF1-213ENST00000574428 QRICH2Q9H0J4 1663 aa33.62■■■□□ 2.97
ATPAF1-213ENST00000574428 KNDC1Q76NI1 1749 aa33.62■■■□□ 2.97
ATPAF1-213ENST00000574428 DLC1Q96QB1 1528 aa33.61■■■□□ 2.97
ATPAF1-213ENST00000574428 WASHC2AQ641Q2 1341 aa33.6■■■□□ 2.97
ATPAF1-213ENST00000574428 PRAM1Q96QH2 718 aa33.59■■■□□ 2.97
ATPAF1-213ENST00000574428 TECPR2O15040 1411 aa33.59■■■□□ 2.97
ATPAF1-213ENST00000574428 STRCQ7RTU9 1775 aa33.58■■■□□ 2.97
ATPAF1-213ENST00000574428 CPS1P31327 1500 aa33.58■■■□□ 2.97
ATPAF1-213ENST00000574428 SAFB2Q14151 953 aaKnown RBP eCLIP33.57■■■□□ 2.96
ATPAF1-213ENST00000574428 KIF7Q2M1P5 1343 aa33.56■■■□□ 2.96
ATPAF1-213ENST00000574428 CCDC7Q96M83 1385 aa33.56■■■□□ 2.96
ATPAF1-213ENST00000574428 DISP3Q9P2K9 1392 aa33.56■■■□□ 2.96
ATPAF1-213ENST00000574428 PIK3R4Q99570 1358 aa33.56■■■□□ 2.96
ATPAF1-213ENST00000574428 POGKQ9P215 609 aa33.55■■■□□ 2.96
ATPAF1-213ENST00000574428 AMOTL2Q9Y2J4 779 aa33.55■■■□□ 2.96
ATPAF1-213ENST00000574428 XRN1Q8IZH2 1706 aaKnown RBP33.54■■■□□ 2.96
ATPAF1-213ENST00000574428 PLEKHH1Q9ULM0 1364 aa33.54■■■□□ 2.96
ATPAF1-213ENST00000574428 SBNO2Q9Y2G9 1366 aa33.54■■■□□ 2.96
ATPAF1-213ENST00000574428 WAPLQ7Z5K2 1190 aa33.53■■■□□ 2.96
ATPAF1-213ENST00000574428 ROBO2Q9HCK4 1378 aa33.53■■■□□ 2.96
ATPAF1-213ENST00000574428 TMF1P82094 1093 aa33.52■■■□□ 2.96
ATPAF1-213ENST00000574428 FAM135BQ49AJ0 1406 aa33.5■■■□□ 2.95
ATPAF1-213ENST00000574428 CHD2O14647 1828 aaKnown RBP33.5■■■□□ 2.95
ATPAF1-213ENST00000574428 POLR3GLQ9BT43 218 aa33.5■■■□□ 2.95
ATPAF1-213ENST00000574428 SIRT1Q96EB6 747 aa33.47■■■□□ 2.95
ATPAF1-213ENST00000574428 KCNA6P17658 529 aa33.47■■■□□ 2.95
ATPAF1-213ENST00000574428 PTCH1Q13635 1447 aa33.47■■■□□ 2.95
ATPAF1-213ENST00000574428 MINK1Q8N4C8 1332 aaPredicted RBP33.45■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms