RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ROCK2O75116 1388 aaKnown RBP19.33■□□□□ 0.69
CCDC40-209ENST00000573474 TRPM1Q7Z4N2 1603 aa19.33■□□□□ 0.69
CCDC40-209ENST00000573474 CARD11Q9BXL7 1154 aa19.33■□□□□ 0.68
CCDC40-209ENST00000573474 NEXMIFQ5QGS0 1516 aa19.33■□□□□ 0.68
CCDC40-209ENST00000573474 PPLO60437 1756 aa19.33■□□□□ 0.68
CCDC40-209ENST00000573474 ZFYVE9O95405 1425 aa19.33■□□□□ 0.68
CCDC40-209ENST00000573474 HSPA5P11021 654 aaKnown RBP19.32■□□□□ 0.68
CCDC40-209ENST00000573474 GPRASP1Q5JY77 1395 aa19.32■□□□□ 0.68
CCDC40-209ENST00000573474 NBPF1Q3BBV0 1214 aa19.31■□□□□ 0.68
CCDC40-209ENST00000573474 KDM5AP29375 1690 aaKnown RBP19.3■□□□□ 0.68
CCDC40-209ENST00000573474 MYO5BQ9ULV0 1848 aa19.29■□□□□ 0.68
CCDC40-209ENST00000573474 HDGFP51858 240 aaKnown RBP19.28■□□□□ 0.68
CCDC40-209ENST00000573474 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.28■□□□□ 0.68
CCDC40-209ENST00000573474 PIK3C2GO75747 1445 aa19.27■□□□□ 0.68
CCDC40-209ENST00000573474 RIMS2Q9UQ26 1411 aa19.27■□□□□ 0.68
CCDC40-209ENST00000573474 NUTM2DQ5VT03 806 aaPredicted RBP19.27■□□□□ 0.68
CCDC40-209ENST00000573474 HIRIP3Q9BW71 556 aaPredicted RBP19.27■□□□□ 0.68
CCDC40-209ENST00000573474 C14orf93Q9H972 538 aaKnown RBP19.27■□□□□ 0.68
CCDC40-209ENST00000573474 KIAA1210Q9ULL0 1709 aa19.27■□□□□ 0.68
CCDC40-209ENST00000573474 USP47Q96K76 1375 aa19.27■□□□□ 0.68
CCDC40-209ENST00000573474 CFAP70Q5T0N1 1121 aa19.26■□□□□ 0.67
CCDC40-209ENST00000573474 LAMC1P11047 1609 aa19.25■□□□□ 0.67
CCDC40-209ENST00000573474 PTPRMP28827 1452 aa19.25■□□□□ 0.67
CCDC40-209ENST00000573474 UBR1Q8IWV7 1749 aa19.25■□□□□ 0.67
CCDC40-209ENST00000573474 TMEM2Q9UHN6 1383 aa19.23■□□□□ 0.67
CCDC40-209ENST00000573474 THEMISQ8N1K5 641 aaPredicted RBP19.23■□□□□ 0.67
CCDC40-209ENST00000573474 MYO3AQ8NEV4 1616 aa19.22■□□□□ 0.67
CCDC40-209ENST00000573474 SETBP1Q9Y6X0 1596 aa19.19■□□□□ 0.66
CCDC40-209ENST00000573474 SCAF11Q99590 1463 aaKnown RBP19.18■□□□□ 0.66
CCDC40-209ENST00000573474 ST20-MTHFSA0A0A6YYL1 179 aa19.18■□□□□ 0.66
CCDC40-209ENST00000573474 SETD1BQ9UPS6 1966 aaKnown RBP19.18■□□□□ 0.66
CCDC40-209ENST00000573474 EID1Q9Y6B2 187 aa19.17■□□□□ 0.66
CCDC40-209ENST00000573474 CEP170BQ9Y4F5 1589 aaPredicted RBP19.17■□□□□ 0.66
CCDC40-209ENST00000573474 ARHGAP23Q9P227 1491 aa19.16■□□□□ 0.66
CCDC40-209ENST00000573474 SLIT1O75093 1534 aa19.16■□□□□ 0.66
CCDC40-209ENST00000573474 TXNDC2Q86VQ3 553 aa19.16■□□□□ 0.66
CCDC40-209ENST00000573474 DIEXFQ68CQ4 756 aaKnown RBP19.15■□□□□ 0.66
CCDC40-209ENST00000573474 KDM4FA0A1W2PPD8 638 aa19.14■□□□□ 0.65
CCDC40-209ENST00000573474 LTKP29376 864 aa19.14■□□□□ 0.65
CCDC40-209ENST00000573474 EIF3AQ14152 1382 aaKnown RBP19.14■□□□□ 0.65
CCDC40-209ENST00000573474 ADGRB1O14514 1584 aa19.14■□□□□ 0.65
CCDC40-209ENST00000573474 IQGAP1P46940 1657 aa19.14■□□□□ 0.65
CCDC40-209ENST00000573474 TMEM132EQ6IEE7 984 aa19.13■□□□□ 0.65
CCDC40-209ENST00000573474 ALKQ9UM73 1620 aa19.13■□□□□ 0.65
CCDC40-209ENST00000573474 ZNF142P52746 1687 aaPredicted RBP19.13■□□□□ 0.65
CCDC40-209ENST00000573474 PLEKHG1Q9ULL1 1385 aa19.12■□□□□ 0.65
CCDC40-209ENST00000573474 WASHC2AQ641Q2 1341 aa19.11■□□□□ 0.65
CCDC40-209ENST00000573474 C11orf95C9JLR9 678 aaPredicted RBP19.11■□□□□ 0.65
CCDC40-209ENST00000573474 SENP3Q9H4L4 574 aaPredicted RBP19.11■□□□□ 0.65
CCDC40-209ENST00000573474 BCANQ96GW7 911 aa19.1■□□□□ 0.65
CCDC40-209ENST00000573474 CCDC7Q96M83 1385 aa19.09■□□□□ 0.65
CCDC40-209ENST00000573474 TESK2Q96S53 571 aa19.09■□□□□ 0.65
CCDC40-209ENST00000573474 SLC24A1O60721 1099 aa19.08■□□□□ 0.64
CCDC40-209ENST00000573474 TRAK1Q9UPV9 953 aa19.08■□□□□ 0.64
CCDC40-209ENST00000573474 KIF7Q2M1P5 1343 aa19.07■□□□□ 0.64
CCDC40-209ENST00000573474 ASXL1Q8IXJ9 1541 aa19.07■□□□□ 0.64
CCDC40-209ENST00000573474 DDX10Q13206 875 aaKnown RBP19.07■□□□□ 0.64
CCDC40-209ENST00000573474 ANKLE2Q86XL3 938 aa19.07■□□□□ 0.64
CCDC40-209ENST00000573474 NRXN3Q9Y4C0 1643 aa19.07■□□□□ 0.64
CCDC40-209ENST00000573474 YTHDC2Q9H6S0 1430 aaKnown RBP19.06■□□□□ 0.64
CCDC40-209ENST00000573474 TMF1P82094 1093 aa19.05■□□□□ 0.64
CCDC40-209ENST00000573474 CENPJQ9HC77 1338 aaPredicted RBP19.04■□□□□ 0.64
CCDC40-209ENST00000573474 ADAMTS13Q76LX8 1427 aa19.04■□□□□ 0.64
CCDC40-209ENST00000573474 STK26Q9P289 416 aa19.04■□□□□ 0.64
CCDC40-209ENST00000573474 LRPPRCP42704 1394 aaKnown RBP19.04■□□□□ 0.64
CCDC40-209ENST00000573474 SETD1AO15047 1707 aaKnown RBP19.03■□□□□ 0.64
CCDC40-209ENST00000573474 TBX22Q9Y458 520 aa19.03■□□□□ 0.64
CCDC40-209ENST00000573474 MED14O60244 1454 aa19.03■□□□□ 0.64
CCDC40-209ENST00000573474 METP08581 1390 aa19.02■□□□□ 0.64
CCDC40-209ENST00000573474 POLR1AO95602 1720 aaPredicted RBP19.02■□□□□ 0.63
CCDC40-209ENST00000573474 ABCC11Q96J66 1382 aa19.01■□□□□ 0.63
CCDC40-209ENST00000573474 SBNO2Q9Y2G9 1366 aa19.01■□□□□ 0.63
CCDC40-209ENST00000573474 CDCA8Q53HL2 280 aa19■□□□□ 0.63
CCDC40-209ENST00000573474 SLC26A8Q96RN1 970 aa19■□□□□ 0.63
CCDC40-209ENST00000573474 DISP3Q9P2K9 1392 aa18.99■□□□□ 0.63
CCDC40-209ENST00000573474 POLR3GLQ9BT43 218 aa18.99■□□□□ 0.63
CCDC40-209ENST00000573474 DIP2AQ14689 1571 aa18.98■□□□□ 0.63
CCDC40-209ENST00000573474 SIRT1Q96EB6 747 aa18.98■□□□□ 0.63
CCDC40-209ENST00000573474 DLC1Q96QB1 1528 aa18.98■□□□□ 0.63
CCDC40-209ENST00000573474 ARHGEF28Q8N1W1 1705 aaKnown RBP18.97■□□□□ 0.63
CCDC40-209ENST00000573474 POGKQ9P215 609 aa18.97■□□□□ 0.63
CCDC40-209ENST00000573474 PRAM1Q96QH2 718 aa18.96■□□□□ 0.63
CCDC40-209ENST00000573474 TECPR2O15040 1411 aa18.95■□□□□ 0.62
CCDC40-209ENST00000573474 NCKAP5LQ9HCH0 1330 aa18.94■□□□□ 0.62
CCDC40-209ENST00000573474 PIK3R4Q99570 1358 aa18.93■□□□□ 0.62
CCDC40-209ENST00000573474 NPHP4O75161 1426 aaPredicted RBP18.93■□□□□ 0.62
CCDC40-209ENST00000573474 QRICH2Q9H0J4 1663 aa18.93■□□□□ 0.62
CCDC40-209ENST00000573474 FAM135BQ49AJ0 1406 aa18.92■□□□□ 0.62
CCDC40-209ENST00000573474 SAFB2Q14151 953 aaKnown RBP eCLIP18.92■□□□□ 0.62
CCDC40-209ENST00000573474 EVC2Q86UK5 1308 aa18.92■□□□□ 0.62
CCDC40-209ENST00000573474 KNDC1Q76NI1 1749 aa18.91■□□□□ 0.62
CCDC40-209ENST00000573474 WAPLQ7Z5K2 1190 aa18.91■□□□□ 0.62
CCDC40-209ENST00000573474 PUS7Q96PZ0 661 aaKnown RBP18.91■□□□□ 0.62
CCDC40-209ENST00000573474 AMOTL2Q9Y2J4 779 aa18.91■□□□□ 0.62
CCDC40-209ENST00000573474 PTPRUQ92729 1446 aa18.91■□□□□ 0.62
CCDC40-209ENST00000573474 CPS1P31327 1500 aa18.9■□□□□ 0.62
CCDC40-209ENST00000573474 MIER1Q8N108 512 aa18.88■□□□□ 0.61
CCDC40-209ENST00000573474 MINK1Q8N4C8 1332 aaPredicted RBP18.88■□□□□ 0.61
CCDC40-209ENST00000573474 PLEKHH1Q9ULM0 1364 aa18.88■□□□□ 0.61
CCDC40-209ENST00000573474 LMTK3Q96Q04 1460 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 216.6 ms