RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 TRIM67Q6ZTA4 783 aa5.01□□□□□ -1.61
VPS35-209ENST00000568642 CERKQ8TCT0 537 aa5.01□□□□□ -1.61
VPS35-209ENST00000568642 ZDHHC16Q969W1 377 aa5.01□□□□□ -1.61
VPS35-209ENST00000568642 TSPOAP1O95153 1857 aa5□□□□□ -1.61
VPS35-209ENST00000568642 LAPTM4BQ86VI4 370 aa5□□□□□ -1.61
VPS35-209ENST00000568642 JPH4Q96JJ6 628 aa5□□□□□ -1.61
VPS35-209ENST00000568642 SLC24A3Q9HC58 644 aa5□□□□□ -1.61
VPS35-209ENST00000568642 SEPT9Q9UHD8 586 aaPredicted RBP5□□□□□ -1.61
VPS35-209ENST00000568642 HPS5Q9UPZ3 1129 aa5□□□□□ -1.61
VPS35-209ENST00000568642 PPP1R3GB7ZBB8 358 aa4.99□□□□□ -1.61
VPS35-209ENST00000568642 RGS22Q8NE09 1264 aa4.99□□□□□ -1.61
VPS35-209ENST00000568642 KCNV2Q8TDN2 545 aa4.99□□□□□ -1.61
VPS35-209ENST00000568642 TSR3Q9UJK0 312 aaKnown RBP4.99□□□□□ -1.61
VPS35-209ENST00000568642 CCDC9Q9Y3X0 531 aaKnown RBP4.99□□□□□ -1.61
VPS35-209ENST00000568642 STK25O00506 426 aa4.98□□□□□ -1.61
VPS35-209ENST00000568642 KIAA1468Q9P260 1216 aa4.98□□□□□ -1.61
VPS35-209ENST00000568642 WFS1O76024 890 aa4.97□□□□□ -1.61
VPS35-209ENST00000568642 PKDCCQ504Y2 493 aa4.97□□□□□ -1.61
VPS35-209ENST00000568642 ANO8Q9HCE9 1232 aaPredicted RBP4.97□□□□□ -1.61
VPS35-209ENST00000568642 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.97□□□□□ -1.61
VPS35-209ENST00000568642 CDKN2AIPQ9NXV6 580 aaPredicted RBP4.97□□□□□ -1.61
VPS35-209ENST00000568642 HMGXB3Q12766 1538 aa4.97□□□□□ -1.61
VPS35-209ENST00000568642 EIF5BO60841 1220 aaKnown RBP4.96□□□□□ -1.62
VPS35-209ENST00000568642 ARID3AQ99856 593 aa4.96□□□□□ -1.62
VPS35-209ENST00000568642 ARID3CA6NKF2 412 aa4.95□□□□□ -1.62
VPS35-209ENST00000568642 WIPF1O43516 503 aa4.95□□□□□ -1.62
VPS35-209ENST00000568642 SUZ12Q15022 739 aaKnown RBP4.95□□□□□ -1.62
VPS35-209ENST00000568642 CADPS2Q86UW7 1296 aa4.95□□□□□ -1.62
VPS35-209ENST00000568642 ZNF516Q92618 1163 aa4.95□□□□□ -1.62
VPS35-209ENST00000568642 MTRQ99707 1265 aa4.95□□□□□ -1.62
VPS35-209ENST00000568642 TOP2BQ02880 1626 aa4.94□□□□□ -1.62
VPS35-209ENST00000568642 ST8SIA5O15466 376 aa4.94□□□□□ -1.62
VPS35-209ENST00000568642 DGAT1O75907 488 aa4.94□□□□□ -1.62
VPS35-209ENST00000568642 NFX1Q12986 1120 aaKnown RBP4.94□□□□□ -1.62
VPS35-209ENST00000568642 LCE2CQ5TA81 110 aa4.94□□□□□ -1.62
VPS35-209ENST00000568642 LRCH3Q96II8 777 aa4.94□□□□□ -1.62
VPS35-209ENST00000568642 ZMYND10O75800 440 aa4.93□□□□□ -1.62
VPS35-209ENST00000568642 INSM1Q01101 510 aaPredicted RBP4.93□□□□□ -1.62
VPS35-209ENST00000568642 NKX2-3Q8TAU0 364 aa4.93□□□□□ -1.62
VPS35-209ENST00000568642 EVI5O60447 810 aa4.92□□□□□ -1.62
VPS35-209ENST00000568642 FAM98CQ17RN3 349 aaKnown RBP4.92□□□□□ -1.62
VPS35-209ENST00000568642 EMID1Q96A84 441 aaPredicted RBP4.92□□□□□ -1.62
VPS35-209ENST00000568642 ZNF428Q96B54 188 aa4.92□□□□□ -1.62
VPS35-209ENST00000568642 IL21Q9HBE4 155 aa4.92□□□□□ -1.62
VPS35-209ENST00000568642 SMARCA4P51532 1647 aa4.92□□□□□ -1.62
VPS35-209ENST00000568642 GAPVD1Q14C86 1478 aa4.92□□□□□ -1.62
VPS35-209ENST00000568642 CEP164Q9UPV0 1460 aa4.92□□□□□ -1.62
VPS35-209ENST00000568642 MED1Q15648 1581 aaPredicted RBP4.91□□□□□ -1.62
VPS35-209ENST00000568642 AAASQ9NRG9 546 aa4.91□□□□□ -1.62
VPS35-209ENST00000568642 PCDHGA10Q9Y5H3 936 aa4.91□□□□□ -1.62
VPS35-209ENST00000568642 ATAD2BQ9ULI0 1458 aa4.91□□□□□ -1.62
VPS35-209ENST00000568642 CLASP1Q7Z460 1538 aa4.91□□□□□ -1.62
VPS35-209ENST00000568642 ZNF608Q9ULD9 1512 aaPredicted RBP4.91□□□□□ -1.62
VPS35-209ENST00000568642 EIF4G3O43432 1585 aaKnown RBP4.91□□□□□ -1.62
VPS35-209ENST00000568642 ZBTB7CA1YPR0 619 aa4.9□□□□□ -1.63
VPS35-209ENST00000568642 FAM187AA6NFU0 413 aa4.9□□□□□ -1.63
VPS35-209ENST00000568642 ONECUT3O60422 494 aaPredicted RBP4.9□□□□□ -1.63
VPS35-209ENST00000568642 PDIA4P13667 645 aaKnown RBP4.9□□□□□ -1.63
VPS35-209ENST00000568642 PPP4CP60510 307 aa4.9□□□□□ -1.63
VPS35-209ENST00000568642 GPBP1L1Q9HC44 474 aaPredicted RBP4.9□□□□□ -1.63
VPS35-209ENST00000568642 TESPA1A2RU30 521 aaPredicted RBP4.89□□□□□ -1.63
VPS35-209ENST00000568642 APBB1O00213 710 aa4.89□□□□□ -1.63
VPS35-209ENST00000568642 TRAIPQ9BWF2 469 aa4.89□□□□□ -1.63
VPS35-209ENST00000568642 DACH1Q9UI36 760 aa4.89□□□□□ -1.63
VPS35-209ENST00000568642 PCF11O94913 1555 aaKnown RBP4.89□□□□□ -1.63
VPS35-209ENST00000568642 TRIM6-TRIM34B2RNG4 842 aa4.88□□□□□ -1.63
VPS35-209ENST00000568642 FAM69CQ0P6D2 419 aa4.88□□□□□ -1.63
VPS35-209ENST00000568642 BARGINQ6ZT62 677 aa4.88□□□□□ -1.63
VPS35-209ENST00000568642 P3H3Q8IVL6 736 aa4.88□□□□□ -1.63
VPS35-209ENST00000568642 MTMR7Q9Y216 660 aa4.88□□□□□ -1.63
VPS35-209ENST00000568642 DIP2BQ9P265 1576 aa4.87□□□□□ -1.63
VPS35-209ENST00000568642 PRR20EP86478 221 aa4.87□□□□□ -1.63
VPS35-209ENST00000568642 PRR20CP86479 221 aa4.87□□□□□ -1.63
VPS35-209ENST00000568642 PRR20DP86480 221 aa4.87□□□□□ -1.63
VPS35-209ENST00000568642 PRR20BP86481 221 aa4.87□□□□□ -1.63
VPS35-209ENST00000568642 PRR20AP86496 221 aa4.87□□□□□ -1.63
VPS35-209ENST00000568642 PPP1R15BQ5SWA1 713 aa4.87□□□□□ -1.63
VPS35-209ENST00000568642 KCTD17Q8N5Z5 321 aa4.87□□□□□ -1.63
VPS35-209ENST00000568642 TNFRSF10AO00220 468 aa4.86□□□□□ -1.63
VPS35-209ENST00000568642 SLC19A1P41440 591 aa4.86□□□□□ -1.63
VPS35-209ENST00000568642 CCDC82Q8N4S0 544 aa4.86□□□□□ -1.63
VPS35-209ENST00000568642 IL27Q8NEV9 243 aa4.86□□□□□ -1.63
VPS35-209ENST00000568642 ABCC10Q5T3U5 1492 aa4.86□□□□□ -1.63
VPS35-209ENST00000568642 SYNJ1O43426 1573 aa4.86□□□□□ -1.63
VPS35-209ENST00000568642 SRCAPQ6ZRS2 3230 aa4.85□□□□□ -1.63
VPS35-209ENST00000568642 SPRYD7Q5W111 196 aa4.85□□□□□ -1.63
VPS35-209ENST00000568642 GMPR2Q9P2T1 348 aaKnown RBP4.85□□□□□ -1.63
VPS35-209ENST00000568642 BAZ1BQ9UIG0 1483 aaKnown RBP4.85□□□□□ -1.63
VPS35-209ENST00000568642 SEMA3EO15041 775 aa4.84□□□□□ -1.63
VPS35-209ENST00000568642 RAD21O60216 631 aa4.84□□□□□ -1.63
VPS35-209ENST00000568642 SAMD7Q7Z3H4 446 aa4.84□□□□□ -1.63
VPS35-209ENST00000568642 PUS7Q96PZ0 661 aaKnown RBP4.84□□□□□ -1.63
VPS35-209ENST00000568642 CHMP4AQ9BY43 222 aa4.84□□□□□ -1.63
VPS35-209ENST00000568642 CRISPLD2Q9H0B8 497 aa4.84□□□□□ -1.63
VPS35-209ENST00000568642 SNAPC4Q5SXM2 1469 aa4.83□□□□□ -1.64
VPS35-209ENST00000568642 IFT140Q96RY7 1462 aa4.83□□□□□ -1.64
VPS35-209ENST00000568642 CADPSQ9ULU8 1353 aa4.83□□□□□ -1.64
VPS35-209ENST00000568642 GDF9O60383 454 aa4.83□□□□□ -1.64
VPS35-209ENST00000568642 GGCXP38435 758 aa4.83□□□□□ -1.64
VPS35-209ENST00000568642 APLP1P51693 650 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms