RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 PANK1Q8TE04 598 aa14.79□□□□□ -0.04
CDH1-210ENST00000566612 SLKQ9H2G2 1235 aaPredicted RBP14.79□□□□□ -0.04
CDH1-210ENST00000566612 KDM6BO15054 1643 aa14.78□□□□□ -0.04
CDH1-210ENST00000566612 BCAR3O75815 825 aa14.78□□□□□ -0.04
CDH1-210ENST00000566612 MSH5O43196 834 aa14.78□□□□□ -0.04
CDH1-210ENST00000566612 FAM69CQ0P6D2 419 aa14.78□□□□□ -0.04
CDH1-210ENST00000566612 PAK3O75914 559 aaPredicted RBP14.77□□□□□ -0.04
CDH1-210ENST00000566612 LMOD2Q6P5Q4 547 aa14.77□□□□□ -0.04
CDH1-210ENST00000566612 TCP11L2Q8N4U5 519 aa14.77□□□□□ -0.04
CDH1-210ENST00000566612 PBRM1Q86U86 1689 aa14.77□□□□□ -0.04
CDH1-210ENST00000566612 HDGFP51858 240 aaKnown RBP14.77□□□□□ -0.05
CDH1-210ENST00000566612 ADGRF5Q8IZF2 1346 aa14.77□□□□□ -0.05
CDH1-210ENST00000566612 APBB1O00213 710 aa14.77□□□□□ -0.05
CDH1-210ENST00000566612 RUNDC1Q96C34 613 aa14.76□□□□□ -0.05
CDH1-210ENST00000566612 IPO8O15397 1037 aaKnown RBP14.76□□□□□ -0.05
CDH1-210ENST00000566612 C20orf194Q5TEA3 1177 aa14.75□□□□□ -0.05
CDH1-210ENST00000566612 PMFBP1Q8TBY8 1022 aa14.75□□□□□ -0.05
CDH1-210ENST00000566612 FAM161AQ3B820 660 aa14.75□□□□□ -0.05
CDH1-210ENST00000566612 EIF5BO60841 1220 aaKnown RBP14.74□□□□□ -0.05
CDH1-210ENST00000566612 DNMT1P26358 1616 aaKnown RBP14.74□□□□□ -0.05
CDH1-210ENST00000566612 TEX14Q8IWB6 1497 aa14.73□□□□□ -0.05
CDH1-210ENST00000566612 SYCP2Q9BX26 1530 aa14.73□□□□□ -0.05
CDH1-210ENST00000566612 DHX29Q7Z478 1369 aaKnown RBP14.73□□□□□ -0.05
CDH1-210ENST00000566612 RIPK4P57078 832 aa14.72□□□□□ -0.05
CDH1-210ENST00000566612 TESK2Q96S53 571 aa14.72□□□□□ -0.05
CDH1-210ENST00000566612 RALGAPBQ86X10 1494 aa14.71□□□□□ -0.05
CDH1-210ENST00000566612 MFAP1P55081 439 aaKnown RBP14.71□□□□□ -0.05
CDH1-210ENST00000566612 NUP160Q12769 1436 aa14.71□□□□□ -0.05
CDH1-210ENST00000566612 TRHP20396 242 aaPredicted RBP14.71□□□□□ -0.05
CDH1-210ENST00000566612 DIAPH1O60610 1272 aaKnown RBP14.7□□□□□ -0.06
CDH1-210ENST00000566612 ZKSCAN2Q63HK3 967 aa14.7□□□□□ -0.06
CDH1-210ENST00000566612 PRAM1Q96QH2 718 aa14.7□□□□□ -0.06
CDH1-210ENST00000566612 HMOX1P09601 288 aa14.7□□□□□ -0.06
CDH1-210ENST00000566612 ITSN2Q9NZM3 1697 aa14.7□□□□□ -0.06
CDH1-210ENST00000566612 PRAG1Q86YV5 1406 aa14.69□□□□□ -0.06
CDH1-210ENST00000566612 TRAPPC8Q9Y2L5 1435 aa14.69□□□□□ -0.06
CDH1-210ENST00000566612 FAM135AQ9P2D6 1515 aa14.69□□□□□ -0.06
CDH1-210ENST00000566612 CHMP4BQ9H444 224 aaKnown RBP14.68□□□□□ -0.06
CDH1-210ENST00000566612 CEP170Q5SW79 1584 aa14.67□□□□□ -0.06
CDH1-210ENST00000566612 TSR2Q969E8 191 aaKnown RBP14.67□□□□□ -0.06
CDH1-210ENST00000566612 PER1O15534 1290 aaPredicted RBP14.67□□□□□ -0.06
CDH1-210ENST00000566612 NGEFQ8N5V2 710 aa14.67□□□□□ -0.06
CDH1-210ENST00000566612 RTF1Q92541 710 aaKnown RBP14.67□□□□□ -0.06
CDH1-210ENST00000566612 ADGRL1O94910 1474 aa14.67□□□□□ -0.06
CDH1-210ENST00000566612 PLCH2O75038 1416 aa14.67□□□□□ -0.06
CDH1-210ENST00000566612 HSP90AB1P08238 724 aaKnown RBP14.66□□□□□ -0.06
CDH1-210ENST00000566612 SLFN5Q08AF3 891 aa14.66□□□□□ -0.06
CDH1-210ENST00000566612 DZIP1LQ8IYY4 767 aaKnown RBP14.66□□□□□ -0.06
CDH1-210ENST00000566612 BACH2Q9BYV9 841 aa14.66□□□□□ -0.06
CDH1-210ENST00000566612 CALD1Q05682 793 aaKnown RBP14.65□□□□□ -0.06
CDH1-210ENST00000566612 SPATA31E1Q6ZUB1 1445 aa14.65□□□□□ -0.06
CDH1-210ENST00000566612 COG3Q96JB2 828 aa14.65□□□□□ -0.06
CDH1-210ENST00000566612 NGDNQ8NEJ9 315 aaKnown RBP14.65□□□□□ -0.06
CDH1-210ENST00000566612 FANCAO15360 1455 aa14.65□□□□□ -0.06
CDH1-210ENST00000566612 HSCBQ8IWL3 235 aa14.64□□□□□ -0.07
CDH1-210ENST00000566612 CABP1Q9NZU7 370 aa14.64□□□□□ -0.07
CDH1-210ENST00000566612 AMER1Q5JTC6 1135 aaPredicted RBP14.64□□□□□ -0.07
CDH1-210ENST00000566612 ANP32BQ92688 251 aaKnown RBP14.64□□□□□ -0.07
CDH1-210ENST00000566612 LTV1Q96GA3 475 aaPredicted RBP14.64□□□□□ -0.07
CDH1-210ENST00000566612 NCLP19338 710 aaKnown RBP14.64□□□□□ -0.07
CDH1-210ENST00000566612 WWC1Q8IX03 1113 aa14.64□□□□□ -0.07
CDH1-210ENST00000566612 NSD3Q9BZ95 1437 aa14.63□□□□□ -0.07
CDH1-210ENST00000566612 ADGRL2O95490 1459 aa14.63□□□□□ -0.07
CDH1-210ENST00000566612 EXOSC9Q06265 439 aaKnown RBP14.63□□□□□ -0.07
CDH1-210ENST00000566612 DUSP27Q5VZP5 1158 aa14.63□□□□□ -0.07
CDH1-210ENST00000566612 CD109Q6YHK3 1445 aa14.63□□□□□ -0.07
CDH1-210ENST00000566612 SLC4A10Q6U841 1118 aa14.62□□□□□ -0.07
CDH1-210ENST00000566612 IDI1Q13907 227 aa14.62□□□□□ -0.07
CDH1-210ENST00000566612 GZF1Q9H116 711 aaPredicted RBP14.62□□□□□ -0.07
CDH1-210ENST00000566612 GCC2Q8IWJ2 1684 aa14.62□□□□□ -0.07
CDH1-210ENST00000566612 TPRNQ4KMQ1 711 aa14.62□□□□□ -0.07
CDH1-210ENST00000566612 PARD3Q8TEW0 1356 aa14.61□□□□□ -0.07
CDH1-210ENST00000566612 ANKRD45Q5TZF3 282 aa14.61□□□□□ -0.07
CDH1-210ENST00000566612 CDK19Q9BWU1 502 aa14.61□□□□□ -0.07
CDH1-210ENST00000566612 CASC1Q6TDU7 716 aa14.6□□□□□ -0.07
CDH1-210ENST00000566612 TXNDC2Q86VQ3 553 aa14.6□□□□□ -0.07
CDH1-210ENST00000566612 SCAF11Q99590 1463 aaKnown RBP14.6□□□□□ -0.07
CDH1-210ENST00000566612 FBXO31Q5XUX0 539 aaPredicted RBP14.6□□□□□ -0.07
CDH1-210ENST00000566612 SLC52A1Q9NWF4 448 aa14.6□□□□□ -0.07
CDH1-210ENST00000566612 EID1Q9Y6B2 187 aa14.6□□□□□ -0.07
CDH1-210ENST00000566612 SHANK2Q9UPX8 1470 aa14.6□□□□□ -0.07
CDH1-210ENST00000566612 NOS1P29475 1434 aa14.6□□□□□ -0.07
CDH1-210ENST00000566612 AMPHP49418 695 aa14.6□□□□□ -0.07
CDH1-210ENST00000566612 PRKAR2BP31323 418 aa14.59□□□□□ -0.07
CDH1-210ENST00000566612 FOXD4L1Q9NU39 408 aa14.59□□□□□ -0.07
CDH1-210ENST00000566612 UHRF1BP1Q6BDS2 1440 aa14.59□□□□□ -0.07
CDH1-210ENST00000566612 DENND4BO75064 1496 aaPredicted RBP14.58□□□□□ -0.07
CDH1-210ENST00000566612 PDE3AQ14432 1141 aa14.58□□□□□ -0.08
CDH1-210ENST00000566612 DDX19BQ9UMR2 479 aa14.58□□□□□ -0.08
CDH1-210ENST00000566612 DUOX2Q9NRD8 1548 aa14.57□□□□□ -0.08
CDH1-210ENST00000566612 WAPLQ7Z5K2 1190 aa14.57□□□□□ -0.08
CDH1-210ENST00000566612 A2MP01023 1474 aa14.57□□□□□ -0.08
CDH1-210ENST00000566612 GOLGA6L22H0YM25 854 aa14.57□□□□□ -0.08
CDH1-210ENST00000566612 HAP1P54257 671 aaPredicted RBP14.57□□□□□ -0.08
CDH1-210ENST00000566612 LNPKQ9C0E8 428 aa14.57□□□□□ -0.08
CDH1-210ENST00000566612 RPGRIP1LQ68CZ1 1315 aa14.57□□□□□ -0.08
CDH1-210ENST00000566612 LMOD3Q0VAK6 560 aa14.56□□□□□ -0.08
CDH1-210ENST00000566612 MBD5Q9P267 1494 aa14.56□□□□□ -0.08
CDH1-210ENST00000566612 ARHGEF12Q9NZN5 1544 aa14.55□□□□□ -0.08
CDH1-210ENST00000566612 ABCC10Q5T3U5 1492 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms