RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 MYO3AQ8NEV4 1616 aa43.4■■■■■ 4.54
CTCF-203ENST00000566078 A2ML1A8K2U0 1454 aa43.39■■■■■ 4.54
CTCF-203ENST00000566078 STAG3Q9UJ98 1225 aa43.38■■■■■ 4.54
CTCF-203ENST00000566078 NLRP1Q9C000 1473 aa43.38■■■■■ 4.53
CTCF-203ENST00000566078 NRXN1Q9ULB1 1477 aa43.37■■■■■ 4.53
CTCF-203ENST00000566078 LAMC1P11047 1609 aa43.35■■■■■ 4.53
CTCF-203ENST00000566078 ROCK2O75116 1388 aaKnown RBP43.32■■■■■ 4.53
CTCF-203ENST00000566078 ADGRF5Q8IZF2 1346 aa43.31■■■■■ 4.52
CTCF-203ENST00000566078 PIK3C2GO75747 1445 aa43.25■■■■■ 4.51
CTCF-203ENST00000566078 EIF4G2P78344 907 aaKnown RBP eCLIP43.24■■■■■ 4.51
CTCF-203ENST00000566078 CARD11Q9BXL7 1154 aa43.23■■■■■ 4.51
CTCF-203ENST00000566078 GPRASP1Q5JY77 1395 aa43.23■■■■■ 4.51
CTCF-203ENST00000566078 ZFYVE9O95405 1425 aa43.23■■■■■ 4.51
CTCF-203ENST00000566078 PTPRMP28827 1452 aa43.23■■■■■ 4.51
CTCF-203ENST00000566078 NUTM2DQ5VT03 806 aaPredicted RBP43.22■■■■■ 4.51
CTCF-203ENST00000566078 SETD1BQ9UPS6 1966 aaKnown RBP43.21■■■■■ 4.51
CTCF-203ENST00000566078 HIRIP3Q9BW71 556 aaPredicted RBP43.21■■■■■ 4.51
CTCF-203ENST00000566078 ZNF142P52746 1687 aaPredicted RBP43.2■■■■■ 4.51
CTCF-203ENST00000566078 RIMS2Q9UQ26 1411 aa43.2■■■■■ 4.51
CTCF-203ENST00000566078 VGFO15240 615 aaPredicted RBP43.2■■■■■ 4.51
CTCF-203ENST00000566078 HSPA5P11021 654 aaKnown RBP43.2■■■■■ 4.51
CTCF-203ENST00000566078 NBPF1Q3BBV0 1214 aa43.2■■■■■ 4.51
CTCF-203ENST00000566078 USP47Q96K76 1375 aa43.19■■■■■ 4.5
CTCF-203ENST00000566078 IQGAP1P46940 1657 aa43.19■■■■■ 4.5
CTCF-203ENST00000566078 CEP170BQ9Y4F5 1589 aaPredicted RBP43.18■■■■■ 4.5
CTCF-203ENST00000566078 SETBP1Q9Y6X0 1596 aa43.13■■■■■ 4.49
CTCF-203ENST00000566078 CFAP70Q5T0N1 1121 aa43.11■■■■■ 4.49
CTCF-203ENST00000566078 POLR1AO95602 1720 aaPredicted RBP43.09■■■■■ 4.49
CTCF-203ENST00000566078 TMEM2Q9UHN6 1383 aa43.08■■■■■ 4.49
CTCF-203ENST00000566078 SLIT1O75093 1534 aa43.04■■■■■ 4.48
CTCF-203ENST00000566078 ABCF1Q8NE71 845 aaKnown RBP eCLIP43.03■■■■■ 4.48
CTCF-203ENST00000566078 C14orf93Q9H972 538 aaKnown RBP43.03■■■■■ 4.48
CTCF-203ENST00000566078 ADGRB1O14514 1584 aa43.02■■■■■ 4.48
CTCF-203ENST00000566078 SETD1AO15047 1707 aaKnown RBP43.01■■■■■ 4.48
CTCF-203ENST00000566078 NRXN3Q9Y4C0 1643 aa43.01■■■■■ 4.48
CTCF-203ENST00000566078 SCAF11Q99590 1463 aaKnown RBP43■■■■■ 4.47
CTCF-203ENST00000566078 ARHGAP23Q9P227 1491 aa43■■■■■ 4.47
CTCF-203ENST00000566078 ALKQ9UM73 1620 aa42.99■■■■■ 4.47
CTCF-203ENST00000566078 HDGFP51858 240 aaKnown RBP42.97■■■■■ 4.47
CTCF-203ENST00000566078 SENP3Q9H4L4 574 aaPredicted RBP42.96■■■■■ 4.47
CTCF-203ENST00000566078 THEMISQ8N1K5 641 aaPredicted RBP42.94■■■■■ 4.46
CTCF-203ENST00000566078 ASXL1Q8IXJ9 1541 aa42.94■■■■■ 4.46
CTCF-203ENST00000566078 ST20-MTHFSA0A0A6YYL1 179 aa42.9■■■■■ 4.46
CTCF-203ENST00000566078 KDM4FA0A1W2PPD8 638 aa42.88■■■■■ 4.45
CTCF-203ENST00000566078 ARHGEF28Q8N1W1 1705 aaKnown RBP42.87■■■■■ 4.45
CTCF-203ENST00000566078 EIF3AQ14152 1382 aaKnown RBP42.86■■■■■ 4.45
CTCF-203ENST00000566078 TMEM132EQ6IEE7 984 aa42.84■■■■■ 4.45
CTCF-203ENST00000566078 EID1Q9Y6B2 187 aa42.84■■■■■ 4.45
CTCF-203ENST00000566078 LTKP29376 864 aa42.83■■■■■ 4.45
CTCF-203ENST00000566078 TXNDC2Q86VQ3 553 aa42.82■■■■■ 4.45
CTCF-203ENST00000566078 PLEKHG1Q9ULL1 1385 aa42.82■■■■■ 4.45
CTCF-203ENST00000566078 DIEXFQ68CQ4 756 aaKnown RBP42.79■■■■■ 4.44
CTCF-203ENST00000566078 QRICH2Q9H0J4 1663 aa42.78■■■■■ 4.44
CTCF-203ENST00000566078 WASHC2AQ641Q2 1341 aa42.76■■■■■ 4.44
CTCF-203ENST00000566078 C11orf95C9JLR9 678 aaPredicted RBP42.75■■■■■ 4.43
CTCF-203ENST00000566078 CCDC7Q96M83 1385 aa42.74■■■■■ 4.43
CTCF-203ENST00000566078 BCANQ96GW7 911 aa42.74■■■■■ 4.43
CTCF-203ENST00000566078 YTHDC2Q9H6S0 1430 aaKnown RBP42.73■■■■■ 4.43
CTCF-203ENST00000566078 ADAMTS13Q76LX8 1427 aa42.72■■■■■ 4.43
CTCF-203ENST00000566078 TRAK1Q9UPV9 953 aa42.71■■■■■ 4.43
CTCF-203ENST00000566078 DIP2AQ14689 1571 aa42.7■■■■■ 4.43
CTCF-203ENST00000566078 KIF7Q2M1P5 1343 aa42.7■■■■■ 4.43
CTCF-203ENST00000566078 KNDC1Q76NI1 1749 aa42.69■■■■■ 4.43
CTCF-203ENST00000566078 TESK2Q96S53 571 aa42.69■■■■■ 4.42
CTCF-203ENST00000566078 MED14O60244 1454 aa42.65■■■■■ 4.42
CTCF-203ENST00000566078 DDX10Q13206 875 aaKnown RBP42.64■■■■■ 4.42
CTCF-203ENST00000566078 METP08581 1390 aa42.63■■■■■ 4.42
CTCF-203ENST00000566078 STK26Q9P289 416 aa42.63■■■■■ 4.41
CTCF-203ENST00000566078 CENPJQ9HC77 1338 aaPredicted RBP42.62■■■■■ 4.41
CTCF-203ENST00000566078 ANKLE2Q86XL3 938 aa42.61■■■■■ 4.41
CTCF-203ENST00000566078 LRPPRCP42704 1394 aaKnown RBP42.61■■■■■ 4.41
CTCF-203ENST00000566078 DLC1Q96QB1 1528 aa42.6■■■■■ 4.41
CTCF-203ENST00000566078 DISP3Q9P2K9 1392 aa42.6■■■■■ 4.41
CTCF-203ENST00000566078 TMF1P82094 1093 aa42.56■■■■■ 4.4
CTCF-203ENST00000566078 SBNO2Q9Y2G9 1366 aa42.55■■■■■ 4.4
CTCF-203ENST00000566078 POLR3GLQ9BT43 218 aa42.54■■■■■ 4.4
CTCF-203ENST00000566078 CPS1P31327 1500 aa42.53■■■■■ 4.4
CTCF-203ENST00000566078 SLC26A8Q96RN1 970 aa42.53■■■■■ 4.4
CTCF-203ENST00000566078 ABCC11Q96J66 1382 aa42.5■■■■■ 4.39
CTCF-203ENST00000566078 TBX22Q9Y458 520 aa42.49■■■■■ 4.39
CTCF-203ENST00000566078 TECPR2O15040 1411 aa42.47■■■■■ 4.39
CTCF-203ENST00000566078 LMTK3Q96Q04 1460 aa42.47■■■■■ 4.39
CTCF-203ENST00000566078 NPHP4O75161 1426 aaPredicted RBP42.47■■■■■ 4.39
CTCF-203ENST00000566078 SLC24A1O60721 1099 aa42.46■■■■■ 4.39
CTCF-203ENST00000566078 PRAM1Q96QH2 718 aa42.44■■■■■ 4.38
CTCF-203ENST00000566078 XRN1Q8IZH2 1706 aaKnown RBP42.44■■■■■ 4.38
CTCF-203ENST00000566078 CHD2O14647 1828 aaKnown RBP42.43■■■■■ 4.38
CTCF-203ENST00000566078 PTPRUQ92729 1446 aa42.42■■■■■ 4.38
CTCF-203ENST00000566078 MYOM1P52179 1685 aa42.42■■■■■ 4.38
CTCF-203ENST00000566078 POGKQ9P215 609 aa42.42■■■■■ 4.38
CTCF-203ENST00000566078 NCKAP5LQ9HCH0 1330 aa42.41■■■■■ 4.38
CTCF-203ENST00000566078 SAFB2Q14151 953 aaKnown RBP eCLIP42.4■■■■■ 4.38
CTCF-203ENST00000566078 TULP4Q9NRJ4 1543 aa42.4■■■■■ 4.38
CTCF-203ENST00000566078 CDCA8Q53HL2 280 aa42.38■■■■■ 4.38
CTCF-203ENST00000566078 FAM135BQ49AJ0 1406 aa42.37■■■■■ 4.37
CTCF-203ENST00000566078 PIK3R4Q99570 1358 aa42.35■■■■■ 4.37
CTCF-203ENST00000566078 PLEKHH1Q9ULM0 1364 aa42.34■■■■■ 4.37
CTCF-203ENST00000566078 HSPA2P54652 639 aa42.33■■■■■ 4.37
CTCF-203ENST00000566078 WAPLQ7Z5K2 1190 aa42.31■■■■■ 4.36
CTCF-203ENST00000566078 ROBO2Q9HCK4 1378 aa42.31■■■■■ 4.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms