RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 IFT172Q9UG01 1749 aa18.29■□□□□ 0.52
CLK3-214ENST00000564096 NEXMIFQ5QGS0 1516 aa18.28■□□□□ 0.52
CLK3-214ENST00000564096 ZNF142P52746 1687 aaPredicted RBP18.28■□□□□ 0.52
CLK3-214ENST00000564096 PPLO60437 1756 aa18.27■□□□□ 0.51
CLK3-214ENST00000564096 RALGAPBQ86X10 1494 aa18.26■□□□□ 0.51
CLK3-214ENST00000564096 UBR1Q8IWV7 1749 aa18.26■□□□□ 0.51
CLK3-214ENST00000564096 KDM2AQ9Y2K7 1162 aa18.26■□□□□ 0.51
CLK3-214ENST00000564096 NRXN1Q9ULB1 1477 aa18.24■□□□□ 0.51
CLK3-214ENST00000564096 ZFYVE9O95405 1425 aa18.23■□□□□ 0.51
CLK3-214ENST00000564096 RIMS2Q9UQ26 1411 aa18.23■□□□□ 0.51
CLK3-214ENST00000564096 VGFO15240 615 aaPredicted RBP18.23■□□□□ 0.51
CLK3-214ENST00000564096 HDGFP51858 240 aaKnown RBP18.23■□□□□ 0.51
CLK3-214ENST00000564096 MYO5BQ9ULV0 1848 aa18.22■□□□□ 0.51
CLK3-214ENST00000564096 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.22■□□□□ 0.51
CLK3-214ENST00000564096 PIK3C2GO75747 1445 aa18.22■□□□□ 0.51
CLK3-214ENST00000564096 TMEM2Q9UHN6 1383 aa18.21■□□□□ 0.51
CLK3-214ENST00000564096 LAMC1P11047 1609 aa18.2■□□□□ 0.5
CLK3-214ENST00000564096 TRPM1Q7Z4N2 1603 aa18.2■□□□□ 0.5
CLK3-214ENST00000564096 ROCK2O75116 1388 aaKnown RBP18.2■□□□□ 0.5
CLK3-214ENST00000564096 SLIT1O75093 1534 aa18.2■□□□□ 0.5
CLK3-214ENST00000564096 NBPF8Q3BBV2 869 aa18.19■□□□□ 0.5
CLK3-214ENST00000564096 THEMISQ8N1K5 641 aaPredicted RBP18.19■□□□□ 0.5
CLK3-214ENST00000564096 KIAA1210Q9ULL0 1709 aa18.19■□□□□ 0.5
CLK3-214ENST00000564096 ARHGAP23Q9P227 1491 aa18.18■□□□□ 0.5
CLK3-214ENST00000564096 ADGRF5Q8IZF2 1346 aa18.17■□□□□ 0.5
CLK3-214ENST00000564096 EID1Q9Y6B2 187 aa18.16■□□□□ 0.5
CLK3-214ENST00000564096 SETD1BQ9UPS6 1966 aaKnown RBP18.16■□□□□ 0.5
CLK3-214ENST00000564096 GPRASP1Q5JY77 1395 aa18.16■□□□□ 0.5
CLK3-214ENST00000564096 SCAF11Q99590 1463 aaKnown RBP18.14■□□□□ 0.49
CLK3-214ENST00000564096 SETBP1Q9Y6X0 1596 aa18.13■□□□□ 0.49
CLK3-214ENST00000564096 CARD11Q9BXL7 1154 aa18.12■□□□□ 0.49
CLK3-214ENST00000564096 PLEKHG1Q9ULL1 1385 aa18.12■□□□□ 0.49
CLK3-214ENST00000564096 NUTM2DQ5VT03 806 aaPredicted RBP18.11■□□□□ 0.49
CLK3-214ENST00000564096 EIF3AQ14152 1382 aaKnown RBP18.11■□□□□ 0.49
CLK3-214ENST00000564096 USP47Q96K76 1375 aa18.1■□□□□ 0.49
CLK3-214ENST00000564096 EIF4G2P78344 907 aaKnown RBP eCLIP18.1■□□□□ 0.49
CLK3-214ENST00000564096 DIP2AQ14689 1571 aa18.08■□□□□ 0.49
CLK3-214ENST00000564096 TXNDC2Q86VQ3 553 aa18.08■□□□□ 0.48
CLK3-214ENST00000564096 C14orf93Q9H972 538 aaKnown RBP18.08■□□□□ 0.48
CLK3-214ENST00000564096 CFAP70Q5T0N1 1121 aa18.07■□□□□ 0.48
CLK3-214ENST00000564096 ADGRB1O14514 1584 aa18.07■□□□□ 0.48
CLK3-214ENST00000564096 IQGAP1P46940 1657 aa18.06■□□□□ 0.48
CLK3-214ENST00000564096 ALKQ9UM73 1620 aa18.06■□□□□ 0.48
CLK3-214ENST00000564096 ANKLE2Q86XL3 938 aa18.06■□□□□ 0.48
CLK3-214ENST00000564096 BCANQ96GW7 911 aa18.06■□□□□ 0.48
CLK3-214ENST00000564096 NRXN3Q9Y4C0 1643 aa18.05■□□□□ 0.48
CLK3-214ENST00000564096 LMTK3Q96Q04 1460 aa18.04■□□□□ 0.48
CLK3-214ENST00000564096 NBPF1Q3BBV0 1214 aa18.04■□□□□ 0.48
CLK3-214ENST00000564096 POLR1AO95602 1720 aaPredicted RBP18.03■□□□□ 0.48
CLK3-214ENST00000564096 LTKP29376 864 aa18.03■□□□□ 0.48
CLK3-214ENST00000564096 ASXL1Q8IXJ9 1541 aa18.03■□□□□ 0.48
CLK3-214ENST00000564096 ZNF316A6NFI3 1004 aaPredicted RBP18.02■□□□□ 0.48
CLK3-214ENST00000564096 SETD1AO15047 1707 aaKnown RBP18.01■□□□□ 0.47
CLK3-214ENST00000564096 ADAMTS13Q76LX8 1427 aa18.01■□□□□ 0.47
CLK3-214ENST00000564096 HSPA5P11021 654 aaKnown RBP18.01■□□□□ 0.47
CLK3-214ENST00000564096 NPHP4O75161 1426 aaPredicted RBP18■□□□□ 0.47
CLK3-214ENST00000564096 MED14O60244 1454 aa18■□□□□ 0.47
CLK3-214ENST00000564096 YTHDC2Q9H6S0 1430 aaKnown RBP17.98■□□□□ 0.47
CLK3-214ENST00000564096 LRPPRCP42704 1394 aaKnown RBP17.97■□□□□ 0.47
CLK3-214ENST00000564096 DLC1Q96QB1 1528 aa17.97■□□□□ 0.47
CLK3-214ENST00000564096 PIK3R4Q99570 1358 aa17.96■□□□□ 0.47
CLK3-214ENST00000564096 KNDC1Q76NI1 1749 aa17.95■□□□□ 0.46
CLK3-214ENST00000564096 SLC24A1O60721 1099 aa17.95■□□□□ 0.46
CLK3-214ENST00000564096 TMEM132EQ6IEE7 984 aa17.95■□□□□ 0.46
CLK3-214ENST00000564096 TBX22Q9Y458 520 aa17.95■□□□□ 0.46
CLK3-214ENST00000564096 METP08581 1390 aa17.94■□□□□ 0.46
CLK3-214ENST00000564096 CPS1P31327 1500 aa17.94■□□□□ 0.46
CLK3-214ENST00000564096 TECPR2O15040 1411 aa17.94■□□□□ 0.46
CLK3-214ENST00000564096 ARHGEF28Q8N1W1 1705 aaKnown RBP17.94■□□□□ 0.46
CLK3-214ENST00000564096 ST20-MTHFSA0A0A6YYL1 179 aa17.93■□□□□ 0.46
CLK3-214ENST00000564096 CENPJQ9HC77 1338 aaPredicted RBP17.93■□□□□ 0.46
CLK3-214ENST00000564096 ABCC11Q96J66 1382 aa17.92■□□□□ 0.46
CLK3-214ENST00000564096 SBNO2Q9Y2G9 1366 aa17.92■□□□□ 0.46
CLK3-214ENST00000564096 TRAK1Q9UPV9 953 aa17.92■□□□□ 0.46
CLK3-214ENST00000564096 PTCH1Q13635 1447 aa17.91■□□□□ 0.46
CLK3-214ENST00000564096 SLC26A8Q96RN1 970 aa17.91■□□□□ 0.46
CLK3-214ENST00000564096 HSPA2P54652 639 aa17.9■□□□□ 0.46
CLK3-214ENST00000564096 HIRIP3Q9BW71 556 aaPredicted RBP17.9■□□□□ 0.46
CLK3-214ENST00000564096 STK26Q9P289 416 aa17.9■□□□□ 0.46
CLK3-214ENST00000564096 NCKAP5LQ9HCH0 1330 aa17.9■□□□□ 0.46
CLK3-214ENST00000564096 QRICH2Q9H0J4 1663 aa17.9■□□□□ 0.46
CLK3-214ENST00000564096 FAM135BQ49AJ0 1406 aa17.89■□□□□ 0.46
CLK3-214ENST00000564096 TMF1P82094 1093 aa17.88■□□□□ 0.45
CLK3-214ENST00000564096 XRN1Q8IZH2 1706 aaKnown RBP17.88■□□□□ 0.45
CLK3-214ENST00000564096 CDCA8Q53HL2 280 aa17.87■□□□□ 0.45
CLK3-214ENST00000564096 POGKQ9P215 609 aa17.87■□□□□ 0.45
CLK3-214ENST00000564096 NWD1Q149M9 1564 aa17.86■□□□□ 0.45
CLK3-214ENST00000564096 SIRT1Q96EB6 747 aa17.85■□□□□ 0.45
CLK3-214ENST00000564096 PRAM1Q96QH2 718 aa17.85■□□□□ 0.45
CLK3-214ENST00000564096 TESK2Q96S53 571 aa17.85■□□□□ 0.45
CLK3-214ENST00000564096 PTPRUQ92729 1446 aa17.84■□□□□ 0.45
CLK3-214ENST00000564096 CCDC7Q96M83 1385 aa17.84■□□□□ 0.45
CLK3-214ENST00000564096 FBXO41Q8TF61 875 aa17.84■□□□□ 0.45
CLK3-214ENST00000564096 NKTRP30414 1462 aaKnown RBP17.83■□□□□ 0.45
CLK3-214ENST00000564096 AMOTL2Q9Y2J4 779 aa17.83■□□□□ 0.44
CLK3-214ENST00000564096 KIF7Q2M1P5 1343 aa17.82■□□□□ 0.44
CLK3-214ENST00000564096 ROBO2Q9HCK4 1378 aa17.81■□□□□ 0.44
CLK3-214ENST00000564096 DISP3Q9P2K9 1392 aa17.81■□□□□ 0.44
CLK3-214ENST00000564096 WASHC2AQ641Q2 1341 aa17.81■□□□□ 0.44
CLK3-214ENST00000564096 DMRT2Q9Y5R5 561 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms