RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 ATP6V1DQ9Y5K8 247 aa12.52□□□□□ -0.41
GTF3C1-202ENST00000561623 FBXW7Q969H0 707 aa12.51□□□□□ -0.41
GTF3C1-202ENST00000561623 HNRNPMP52272 730 aaKnown RBP eCLIP12.51□□□□□ -0.41
GTF3C1-202ENST00000561623 TRAK2O60296 914 aa12.51□□□□□ -0.41
GTF3C1-202ENST00000561623 FAM184AQ8NB25 1140 aa12.5□□□□□ -0.41
GTF3C1-202ENST00000561623 CCDC34Q96HJ3 373 aa12.5□□□□□ -0.41
GTF3C1-202ENST00000561623 RNF214Q8ND24 703 aa12.5□□□□□ -0.41
GTF3C1-202ENST00000561623 PANK1Q8TE04 598 aa12.49□□□□□ -0.41
GTF3C1-202ENST00000561623 PATL2C9JE40 543 aaKnown RBP12.49□□□□□ -0.41
GTF3C1-202ENST00000561623 IFT57Q9NWB7 429 aa12.49□□□□□ -0.41
GTF3C1-202ENST00000561623 GPS2Q13227 327 aa12.49□□□□□ -0.41
GTF3C1-202ENST00000561623 DZIP1LQ8IYY4 767 aaKnown RBP12.49□□□□□ -0.41
GTF3C1-202ENST00000561623 TERF2IPQ9NYB0 399 aa12.49□□□□□ -0.41
GTF3C1-202ENST00000561623 TRAK1Q9UPV9 953 aa12.49□□□□□ -0.41
GTF3C1-202ENST00000561623 HOMER1Q86YM7 354 aa12.48□□□□□ -0.41
GTF3C1-202ENST00000561623 LNPKQ9C0E8 428 aa12.48□□□□□ -0.41
GTF3C1-202ENST00000561623 RUSC2Q8N2Y8 1516 aa12.48□□□□□ -0.41
GTF3C1-202ENST00000561623 CCDC18Q5T9S5 1454 aa12.48□□□□□ -0.41
GTF3C1-202ENST00000561623 TEX35Q5T0J7 233 aa12.48□□□□□ -0.41
GTF3C1-202ENST00000561623 NGDNQ8NEJ9 315 aaKnown RBP12.48□□□□□ -0.41
GTF3C1-202ENST00000561623 DDX19BQ9UMR2 479 aa12.48□□□□□ -0.41
GTF3C1-202ENST00000561623 TPD52L1Q16890 204 aaPredicted RBP12.48□□□□□ -0.41
GTF3C1-202ENST00000561623 TOMM22Q9NS69 142 aa12.47□□□□□ -0.41
GTF3C1-202ENST00000561623 KIF7Q2M1P5 1343 aa12.47□□□□□ -0.41
GTF3C1-202ENST00000561623 LMOD3Q0VAK6 560 aa12.47□□□□□ -0.41
GTF3C1-202ENST00000561623 CCDC7Q96M83 1385 aa12.47□□□□□ -0.41
GTF3C1-202ENST00000561623 REC8O95072 547 aa12.47□□□□□ -0.41
GTF3C1-202ENST00000561623 KIF3AQ9Y496 699 aa12.47□□□□□ -0.41
GTF3C1-202ENST00000561623 FAM69CQ0P6D2 419 aa12.47□□□□□ -0.41
GTF3C1-202ENST00000561623 TPM2P07951 284 aa12.47□□□□□ -0.41
GTF3C1-202ENST00000561623 CCDC39Q9UFE4 941 aa12.46□□□□□ -0.41
GTF3C1-202ENST00000561623 TDRD9Q8NDG6 1382 aaKnown RBP12.46□□□□□ -0.41
GTF3C1-202ENST00000561623 BICD2Q8TD16 824 aa12.46□□□□□ -0.41
GTF3C1-202ENST00000561623 CDCA7LQ96GN5 454 aa12.46□□□□□ -0.41
GTF3C1-202ENST00000561623 CTDP1Q9Y5B0 961 aaPredicted RBP12.46□□□□□ -0.41
GTF3C1-202ENST00000561623 CNTLNQ9NXG0 1405 aa12.46□□□□□ -0.42
GTF3C1-202ENST00000561623 NUCB2P80303 420 aa12.46□□□□□ -0.42
GTF3C1-202ENST00000561623 ANO2Q9NQ90 1003 aa12.46□□□□□ -0.42
GTF3C1-202ENST00000561623 CAVIN1Q6NZI2 390 aaKnown RBP12.46□□□□□ -0.42
GTF3C1-202ENST00000561623 LTV1Q96GA3 475 aaPredicted RBP12.46□□□□□ -0.42
GTF3C1-202ENST00000561623 TAF7LQ5H9L4 462 aa12.45□□□□□ -0.42
GTF3C1-202ENST00000561623 VPS37CA5D8V6 355 aaPredicted RBP12.45□□□□□ -0.42
GTF3C1-202ENST00000561623 DIAPH3Q9NSV4 1193 aa12.45□□□□□ -0.42
GTF3C1-202ENST00000561623 AKNAQ7Z591 1439 aa12.45□□□□□ -0.42
GTF3C1-202ENST00000561623 FOSBP53539 338 aa12.43□□□□□ -0.42
GTF3C1-202ENST00000561623 WASHC2AQ641Q2 1341 aa12.43□□□□□ -0.42
GTF3C1-202ENST00000561623 MAP7D2Q96T17 732 aa12.43□□□□□ -0.42
GTF3C1-202ENST00000561623 KIF3BO15066 747 aa12.43□□□□□ -0.42
GTF3C1-202ENST00000561623 TSR1Q2NL82 804 aaKnown RBP12.43□□□□□ -0.42
GTF3C1-202ENST00000561623 VPS53Q5VIR6 699 aa12.43□□□□□ -0.42
GTF3C1-202ENST00000561623 ATF3P18847 181 aa12.43□□□□□ -0.42
GTF3C1-202ENST00000561623 RAD21O60216 631 aa12.42□□□□□ -0.42
GTF3C1-202ENST00000561623 CCAR1Q8IX12 1150 aaKnown RBP12.42□□□□□ -0.42
GTF3C1-202ENST00000561623 CCDC144AA2RUR9 1427 aa12.42□□□□□ -0.42
GTF3C1-202ENST00000561623 SASS6Q6UVJ0 657 aa12.42□□□□□ -0.42
GTF3C1-202ENST00000561623 WIZO95785 1651 aa12.41□□□□□ -0.42
GTF3C1-202ENST00000561623 INTS3Q68E01 1043 aaKnown RBP12.41□□□□□ -0.42
GTF3C1-202ENST00000561623 SMC3Q9UQE7 1217 aa12.41□□□□□ -0.42
GTF3C1-202ENST00000561623 HDAC5Q9UQL6 1122 aa12.41□□□□□ -0.42
GTF3C1-202ENST00000561623 TPM1P09493 284 aa12.41□□□□□ -0.42
GTF3C1-202ENST00000561623 MTERF4Q7Z6M4 381 aaKnown RBP12.41□□□□□ -0.42
GTF3C1-202ENST00000561623 MNS1Q8NEH6 495 aa12.41□□□□□ -0.42
GTF3C1-202ENST00000561623 BACH2Q9BYV9 841 aa12.41□□□□□ -0.42
GTF3C1-202ENST00000561623 MPNDQ8N594 471 aa12.41□□□□□ -0.42
GTF3C1-202ENST00000561623 NECTIN2Q92692 538 aa12.41□□□□□ -0.42
GTF3C1-202ENST00000561623 TRIM34Q9BYJ4 488 aa12.4□□□□□ -0.42
GTF3C1-202ENST00000561623 PRPF40AO75400 957 aaKnown RBP12.4□□□□□ -0.42
GTF3C1-202ENST00000561623 SAMD1Q6SPF0 538 aaPredicted RBP12.4□□□□□ -0.42
GTF3C1-202ENST00000561623 AMPHP49418 695 aa12.4□□□□□ -0.43
GTF3C1-202ENST00000561623 RIPK4P57078 832 aa12.4□□□□□ -0.43
GTF3C1-202ENST00000561623 CCDC173Q0VFZ6 552 aa12.4□□□□□ -0.43
GTF3C1-202ENST00000561623 CCDC70Q6NSX1 233 aa12.4□□□□□ -0.43
GTF3C1-202ENST00000561623 ZKSCAN1P17029 563 aaPredicted RBP12.39□□□□□ -0.43
GTF3C1-202ENST00000561623 ARGLU1Q9NWB6 273 aaPredicted RBP12.39□□□□□ -0.43
GTF3C1-202ENST00000561623 CARMIL2Q6F5E8 1435 aa12.39□□□□□ -0.43
GTF3C1-202ENST00000561623 CCDC27Q2M243 656 aa12.38□□□□□ -0.43
GTF3C1-202ENST00000561623 ADAMTS8Q9UP79 889 aa12.38□□□□□ -0.43
GTF3C1-202ENST00000561623 CHMP4AQ9BY43 222 aa12.38□□□□□ -0.43
GTF3C1-202ENST00000561623 GRPEL1Q9HAV7 217 aa12.37□□□□□ -0.43
GTF3C1-202ENST00000561623 PDZRN3Q9UPQ7 1066 aa12.37□□□□□ -0.43
GTF3C1-202ENST00000561623 CDC45O75419 566 aa12.37□□□□□ -0.43
GTF3C1-202ENST00000561623 PCMTD1Q96MG8 357 aaPredicted RBP12.37□□□□□ -0.43
GTF3C1-202ENST00000561623 PDS5BQ9NTI5 1447 aa12.37□□□□□ -0.43
GTF3C1-202ENST00000561623 RUFY2Q8WXA3 655 aa12.37□□□□□ -0.43
GTF3C1-202ENST00000561623 WWC1Q8IX03 1113 aa12.37□□□□□ -0.43
GTF3C1-202ENST00000561623 TSPY26PQ9H489 355 aa12.37□□□□□ -0.43
GTF3C1-202ENST00000561623 RUNDC1Q96C34 613 aa12.37□□□□□ -0.43
GTF3C1-202ENST00000561623 PODXL2Q9NZ53 605 aa12.37□□□□□ -0.43
GTF3C1-202ENST00000561623 EFCAB2Q5VUJ9 269 aa12.36□□□□□ -0.43
GTF3C1-202ENST00000561623 CEP89Q96ST8 783 aa12.36□□□□□ -0.43
GTF3C1-202ENST00000561623 NOM1Q5C9Z4 860 aaKnown RBP12.36□□□□□ -0.43
GTF3C1-202ENST00000561623 SPC24Q8NBT2 197 aa12.36□□□□□ -0.43
GTF3C1-202ENST00000561623 UQCRHLA0A096LP55 91 aa12.36□□□□□ -0.43
GTF3C1-202ENST00000561623 UQCRHP07919 91 aa12.36□□□□□ -0.43
GTF3C1-202ENST00000561623 EIF2S2P20042 333 aaKnown RBP12.35□□□□□ -0.43
GTF3C1-202ENST00000561623 API5Q9BZZ5 524 aaKnown RBP12.35□□□□□ -0.43
GTF3C1-202ENST00000561623 WASHC2CQ9Y4E1 1318 aa12.35□□□□□ -0.43
GTF3C1-202ENST00000561623 MARCH6O60337 910 aa12.35□□□□□ -0.43
GTF3C1-202ENST00000561623 IFIT2P09913 472 aaKnown RBP12.34□□□□□ -0.43
GTF3C1-202ENST00000561623 TRIM5Q9C035 493 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms