RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 NLRP7Q8WX94 980 aa7.65□□□□□ -1.18
SPG11-211ENST00000558561 EYA1Q99502 592 aa7.65□□□□□ -1.18
SPG11-211ENST00000558561 RABGEF1Q9UJ41 708 aa7.65□□□□□ -1.18
SPG11-211ENST00000558561 PNMA3Q9UL41 463 aa7.65□□□□□ -1.18
SPG11-211ENST00000558561 LAMC3Q9Y6N6 1575 aa7.65□□□□□ -1.18
SPG11-211ENST00000558561 TK2O00142 265 aa7.64□□□□□ -1.19
SPG11-211ENST00000558561 ADGRD1Q6QNK2 874 aa7.64□□□□□ -1.19
SPG11-211ENST00000558561 PXYLP1Q8TE99 480 aa7.64□□□□□ -1.19
SPG11-211ENST00000558561 NBPF26B4DH59 902 aa7.63□□□□□ -1.19
SPG11-211ENST00000558561 RBM46Q8TBY0 533 aaKnown RBP7.63□□□□□ -1.19
SPG11-211ENST00000558561 SEPT9Q9UHD8 586 aaPredicted RBP7.63□□□□□ -1.19
SPG11-211ENST00000558561 CFTRP13569 1480 aa7.62□□□□□ -1.19
SPG11-211ENST00000558561 PDS5BQ9NTI5 1447 aa7.62□□□□□ -1.19
SPG11-211ENST00000558561 BHMG1C9JSJ3 638 aaPredicted RBP7.62□□□□□ -1.19
SPG11-211ENST00000558561 PDE4DQ08499 809 aa7.62□□□□□ -1.19
SPG11-211ENST00000558561 THOC2Q8NI27 1593 aaKnown RBP7.62□□□□□ -1.19
SPG11-211ENST00000558561 RCCD1A6NED2 376 aa7.61□□□□□ -1.19
SPG11-211ENST00000558561 HRO43593 1189 aa7.61□□□□□ -1.19
SPG11-211ENST00000558561 FANCD2Q9BXW9 1451 aa7.61□□□□□ -1.19
SPG11-211ENST00000558561 BRPF1P55201 1214 aaPredicted RBP7.6□□□□□ -1.19
SPG11-211ENST00000558561 MDM2Q00987 491 aaPredicted RBP7.6□□□□□ -1.19
SPG11-211ENST00000558561 AMHR2Q16671 573 aa7.59□□□□□ -1.19
SPG11-211ENST00000558561 REPIN1Q9BWE0 567 aaKnown RBP7.59□□□□□ -1.19
SPG11-211ENST00000558561 GPBP1L1Q9HC44 474 aaPredicted RBP7.59□□□□□ -1.19
SPG11-211ENST00000558561 CUX2O14529 1486 aa7.58□□□□□ -1.2
SPG11-211ENST00000558561 NEUROD2Q15784 382 aa7.58□□□□□ -1.2
SPG11-211ENST00000558561 MRPL50Q8N5N7 158 aaKnown RBP7.58□□□□□ -1.2
SPG11-211ENST00000558561 NBPF3Q9H094 633 aa7.58□□□□□ -1.2
SPG11-211ENST00000558561 URB2Q14146 1524 aaKnown RBP7.57□□□□□ -1.2
SPG11-211ENST00000558561 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.57□□□□□ -1.2
SPG11-211ENST00000558561 TTLL12Q14166 644 aaPredicted RBP7.57□□□□□ -1.2
SPG11-211ENST00000558561 FAM98CQ17RN3 349 aaKnown RBP7.57□□□□□ -1.2
SPG11-211ENST00000558561 PARP9Q8IXQ6 854 aa7.57□□□□□ -1.2
SPG11-211ENST00000558561 DNAJB2P25686 324 aa7.56□□□□□ -1.2
SPG11-211ENST00000558561 LAPTM4BQ86VI4 370 aa7.56□□□□□ -1.2
SPG11-211ENST00000558561 STAC3Q96MF2 364 aa7.56□□□□□ -1.2
SPG11-211ENST00000558561 TMUB1Q9BVT8 246 aa7.56□□□□□ -1.2
SPG11-211ENST00000558561 MRC2Q9UBG0 1479 aa7.55□□□□□ -1.2
SPG11-211ENST00000558561 CLCN1P35523 988 aa7.55□□□□□ -1.2
SPG11-211ENST00000558561 ZFRQ96KR1 1074 aaKnown RBP7.55□□□□□ -1.2
SPG11-211ENST00000558561 KDM4CQ9H3R0 1056 aa7.55□□□□□ -1.2
SPG11-211ENST00000558561 TMEM134Q9H6X4 195 aa7.55□□□□□ -1.2
SPG11-211ENST00000558561 GPCPD1Q9NPB8 672 aa7.55□□□□□ -1.2
SPG11-211ENST00000558561 CEP164Q9UPV0 1460 aa7.55□□□□□ -1.2
SPG11-211ENST00000558561 SWT1Q5T5J6 900 aaKnown RBP7.54□□□□□ -1.2
SPG11-211ENST00000558561 GIGYF2Q6Y7W6 1299 aaKnown RBP7.54□□□□□ -1.2
SPG11-211ENST00000558561 SAMD7Q7Z3H4 446 aa7.54□□□□□ -1.2
SPG11-211ENST00000558561 DAXXQ9UER7 740 aaPredicted RBP7.54□□□□□ -1.2
SPG11-211ENST00000558561 GOLGA8CPA6NN73 597 aa7.53□□□□□ -1.2
SPG11-211ENST00000558561 WDR62O43379 1518 aa7.52□□□□□ -1.2
SPG11-211ENST00000558561 SSTR3P32745 418 aaPredicted RBP7.52□□□□□ -1.21
SPG11-211ENST00000558561 HDGFP51858 240 aaKnown RBP7.52□□□□□ -1.21
SPG11-211ENST00000558561 MS4A1P11836 297 aa7.51□□□□□ -1.21
SPG11-211ENST00000558561 FAM217BQ9NTX9 383 aaPredicted RBP7.51□□□□□ -1.21
SPG11-211ENST00000558561 DDX11L8A8MPP1 907 aa7.5□□□□□ -1.21
SPG11-211ENST00000558561 FAM117AQ9C073 453 aa7.5□□□□□ -1.21
SPG11-211ENST00000558561 TOPBP1Q92547 1522 aa7.49□□□□□ -1.21
SPG11-211ENST00000558561 ZNF608Q9ULD9 1512 aaPredicted RBP7.49□□□□□ -1.21
SPG11-211ENST00000558561 SPNS2Q8IVW8 549 aa7.49□□□□□ -1.21
SPG11-211ENST00000558561 IL27Q8NEV9 243 aa7.49□□□□□ -1.21
SPG11-211ENST00000558561 ANKK1Q8NFD2 765 aa7.49□□□□□ -1.21
SPG11-211ENST00000558561 WNT2BQ93097 391 aa7.49□□□□□ -1.21
SPG11-211ENST00000558561 PRDM2Q13029 1718 aa7.49□□□□□ -1.21
SPG11-211ENST00000558561 RNF40O75150 1001 aa7.48□□□□□ -1.21
SPG11-211ENST00000558561 SLC10A3P09131 477 aa7.48□□□□□ -1.21
SPG11-211ENST00000558561 BCAMP50895 628 aa7.48□□□□□ -1.21
SPG11-211ENST00000558561 MMRN1Q13201 1228 aa7.48□□□□□ -1.21
SPG11-211ENST00000558561 LRCH3Q96II8 777 aa7.48□□□□□ -1.21
SPG11-211ENST00000558561 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.48□□□□□ -1.21
SPG11-211ENST00000558561 RAD54L2Q9Y4B4 1467 aa7.48□□□□□ -1.21
SPG11-211ENST00000558561 KCTD12Q96CX2 325 aaKnown RBP7.47□□□□□ -1.21
SPG11-211ENST00000558561 BEGAINQ9BUH8 593 aa7.47□□□□□ -1.21
SPG11-211ENST00000558561 SOWAHBA6NEL2 793 aa7.46□□□□□ -1.22
SPG11-211ENST00000558561 SULF1Q8IWU6 871 aa7.46□□□□□ -1.22
SPG11-211ENST00000558561 SLF2Q8IX21 1173 aa7.46□□□□□ -1.22
SPG11-211ENST00000558561 RDH13Q8NBN7 331 aa7.46□□□□□ -1.22
SPG11-211ENST00000558561 MYT1LQ9UL68 1186 aa7.46□□□□□ -1.22
SPG11-211ENST00000558561 AQRO60306 1485 aaKnown RBP eCLIP7.46□□□□□ -1.224e-6■□□□□ 10.8
SPG11-211ENST00000558561 PLEKHG3A1L390 1219 aa7.45□□□□□ -1.22
SPG11-211ENST00000558561 CD46P15529 392 aa7.45□□□□□ -1.22
SPG11-211ENST00000558561 TDRD9Q8NDG6 1382 aaKnown RBP7.45□□□□□ -1.22
SPG11-211ENST00000558561 CUX1P39880 1505 aa7.44□□□□□ -1.22
SPG11-211ENST00000558561 SLC4A3P48751 1232 aa7.44□□□□□ -1.22
SPG11-211ENST00000558561 RSPH4AQ5TD94 716 aa7.44□□□□□ -1.22
SPG11-211ENST00000558561 THSD4Q6ZMP0 1018 aa7.44□□□□□ -1.22
SPG11-211ENST00000558561 HPS5Q9UPZ3 1129 aa7.44□□□□□ -1.22
SPG11-211ENST00000558561 GCGRP47871 477 aa7.43□□□□□ -1.22
SPG11-211ENST00000558561 PPP4CP60510 307 aa7.43□□□□□ -1.22
SPG11-211ENST00000558561 WBP1LQ9NX94 342 aa7.43□□□□□ -1.22
SPG11-211ENST00000558561 SOGA1O94964 1423 aa7.43□□□□□ -1.22
SPG11-211ENST00000558561 ABCC8Q09428 1581 aa7.42□□□□□ -1.22
SPG11-211ENST00000558561 PTPN5P54829 565 aa7.42□□□□□ -1.22
SPG11-211ENST00000558561 DDRGK1Q96HY6 314 aa7.42□□□□□ -1.22
SPG11-211ENST00000558561 TSR3Q9UJK0 312 aaKnown RBP7.42□□□□□ -1.22
SPG11-211ENST00000558561 POLA1P09884 1462 aaPredicted RBP7.42□□□□□ -1.22
SPG11-211ENST00000558561 DNMBPQ6XZF7 1577 aa7.42□□□□□ -1.22
SPG11-211ENST00000558561 CFHP08603 1231 aa7.41□□□□□ -1.22
SPG11-211ENST00000558561 FGD5Q6ZNL6 1462 aa7.41□□□□□ -1.22
SPG11-211ENST00000558561 TARBP1Q13395 1621 aaKnown RBP7.41□□□□□ -1.22
SPG11-211ENST00000558561 APLP1P51693 650 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms