RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 THSD4Q6ZMP0 1018 aa12.72□□□□□ -0.37
RTF1-204ENST00000558117 SAMD7Q7Z3H4 446 aa12.72□□□□□ -0.37
RTF1-204ENST00000558117 METTL3Q86U44 580 aaKnown RBP12.72□□□□□ -0.37
RTF1-204ENST00000558117 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.71□□□□□ -0.37
RTF1-204ENST00000558117 SOWAHBA6NEL2 793 aa12.71□□□□□ -0.37
RTF1-204ENST00000558117 IRF6O14896 467 aa12.71□□□□□ -0.37
RTF1-204ENST00000558117 RNF40O75150 1001 aa12.71□□□□□ -0.37
RTF1-204ENST00000558117 RCCD1A6NED2 376 aa12.7□□□□□ -0.38
RTF1-204ENST00000558117 BCAMP50895 628 aa12.7□□□□□ -0.38
RTF1-204ENST00000558117 CCDC102AQ96A19 550 aa12.7□□□□□ -0.38
RTF1-204ENST00000558117 PTPN5P54829 565 aa12.69□□□□□ -0.38
RTF1-204ENST00000558117 SLC24A3Q9HC58 644 aa12.69□□□□□ -0.38
RTF1-204ENST00000558117 SWT1Q5T5J6 900 aaKnown RBP12.68□□□□□ -0.38
RTF1-204ENST00000558117 HCSTQ9UBK5 93 aa12.68□□□□□ -0.38
RTF1-204ENST00000558117 SLF2Q8IX21 1173 aa12.67□□□□□ -0.38
RTF1-204ENST00000558117 TMEM134Q9H6X4 195 aa12.66□□□□□ -0.38
RTF1-204ENST00000558117 HPS5Q9UPZ3 1129 aa12.66□□□□□ -0.38
RTF1-204ENST00000558117 NECTIN2Q92692 538 aa12.64□□□□□ -0.39
RTF1-204ENST00000558117 TSR3Q9UJK0 312 aaKnown RBP12.64□□□□□ -0.39
RTF1-204ENST00000558117 PPP4CP60510 307 aa12.63□□□□□ -0.39
RTF1-204ENST00000558117 PHOX2BQ99453 314 aa12.61□□□□□ -0.39
RTF1-204ENST00000558117 NLRP7Q8WX94 980 aa12.6□□□□□ -0.39
RTF1-204ENST00000558117 NYAP1Q6ZVC0 841 aa12.59□□□□□ -0.39
RTF1-204ENST00000558117 AK7Q96M32 723 aa12.59□□□□□ -0.39
RTF1-204ENST00000558117 WBP1LQ9NX94 342 aa12.59□□□□□ -0.39
RTF1-204ENST00000558117 DAXXQ9UER7 740 aaPredicted RBP12.59□□□□□ -0.39
RTF1-204ENST00000558117 RSPH4AQ5TD94 716 aa12.58□□□□□ -0.4
RTF1-204ENST00000558117 EIF4G1Q04637 1599 aaKnown RBP12.57□□□□□ -0.4
RTF1-204ENST00000558117 TRIM66O15016 1216 aa12.56□□□□□ -0.4
RTF1-204ENST00000558117 MDM2Q00987 491 aaPredicted RBP12.56□□□□□ -0.4
RTF1-204ENST00000558117 SULF1Q8IWU6 871 aa12.55□□□□□ -0.4
RTF1-204ENST00000558117 CLCN1P35523 988 aa12.54□□□□□ -0.4
RTF1-204ENST00000558117 RDH13Q8NBN7 331 aa12.54□□□□□ -0.4
RTF1-204ENST00000558117 DDX11L8A8MPP1 907 aa12.53□□□□□ -0.4
RTF1-204ENST00000558117 TTLL12Q14166 644 aaPredicted RBP12.53□□□□□ -0.4
RTF1-204ENST00000558117 PRR14Q9BWN1 585 aa12.53□□□□□ -0.4
RTF1-204ENST00000558117 GPCPD1Q9NPB8 672 aa12.53□□□□□ -0.4
RTF1-204ENST00000558117 SHROOM4Q9ULL8 1493 aa12.52□□□□□ -0.41
RTF1-204ENST00000558117 KMT5BQ4FZB7 885 aa12.51□□□□□ -0.41
RTF1-204ENST00000558117 CFHP08603 1231 aa12.5□□□□□ -0.41
RTF1-204ENST00000558117 AMHR2Q16671 573 aa12.5□□□□□ -0.41
RTF1-204ENST00000558117 REPIN1Q9BWE0 567 aaKnown RBP12.48□□□□□ -0.41
RTF1-204ENST00000558117 SLC10A3P09131 477 aa12.47□□□□□ -0.41
RTF1-204ENST00000558117 PDE4DQ08499 809 aa12.47□□□□□ -0.41
RTF1-204ENST00000558117 APLP1P51693 650 aa12.46□□□□□ -0.41
RTF1-204ENST00000558117 TMUB1Q9BVT8 246 aa12.45□□□□□ -0.42
RTF1-204ENST00000558117 GIGYF2Q6Y7W6 1299 aaKnown RBP12.44□□□□□ -0.42
RTF1-204ENST00000558117 PARP9Q8IXQ6 854 aa12.43□□□□□ -0.42
RTF1-204ENST00000558117 FAM217BQ9NTX9 383 aaPredicted RBP12.43□□□□□ -0.42
RTF1-204ENST00000558117 PCDHB3Q9Y5E6 796 aa12.42□□□□□ -0.42
RTF1-204ENST00000558117 CD46P15529 392 aa12.41□□□□□ -0.42
RTF1-204ENST00000558117 ACTN4O43707 911 aaKnown RBP12.4□□□□□ -0.42
RTF1-204ENST00000558117 SSTR3P32745 418 aaPredicted RBP12.4□□□□□ -0.42
RTF1-204ENST00000558117 GPBP1L1Q9HC44 474 aaPredicted RBP12.4□□□□□ -0.42
RTF1-204ENST00000558117 PLA2G2EQ9NZK7 142 aa12.4□□□□□ -0.42
RTF1-204ENST00000558117 GCGRP47871 477 aa12.39□□□□□ -0.43
RTF1-204ENST00000558117 BRPF1P55201 1214 aaPredicted RBP12.38□□□□□ -0.43
RTF1-204ENST00000558117 ERCC6Q03468 1493 aa12.38□□□□□ -0.43
RTF1-204ENST00000558117 COPS2P61201 443 aa12.37□□□□□ -0.43
RTF1-204ENST00000558117 MTRQ99707 1265 aa12.37□□□□□ -0.43
RTF1-204ENST00000558117 IL21Q9HBE4 155 aa12.37□□□□□ -0.43
RTF1-204ENST00000558117 ITGBL1O95965 494 aaPredicted RBP12.36□□□□□ -0.43
RTF1-204ENST00000558117 KCNC4Q03721 635 aa12.36□□□□□ -0.43
RTF1-204ENST00000558117 NEUROD2Q15784 382 aa12.36□□□□□ -0.43
RTF1-204ENST00000558117 GRIPAP1Q4V328 841 aa12.35□□□□□ -0.43
RTF1-204ENST00000558117 MS4A1P11836 297 aa12.34□□□□□ -0.43
RTF1-204ENST00000558117 FUT2Q10981 343 aa12.34□□□□□ -0.43
RTF1-204ENST00000558117 NUTM1Q86Y26 1132 aa12.34□□□□□ -0.43
RTF1-204ENST00000558117 KDM4AO75164 1064 aa12.33□□□□□ -0.44
RTF1-204ENST00000558117 TJAP1Q5JTD0 557 aa12.33□□□□□ -0.44
RTF1-204ENST00000558117 BLOC1S3Q6QNY0 202 aa12.33□□□□□ -0.44
RTF1-204ENST00000558117 KDM4CQ9H3R0 1056 aa12.33□□□□□ -0.44
RTF1-204ENST00000558117 NR1I2O75469 434 aa12.32□□□□□ -0.44
RTF1-204ENST00000558117 ATP6V1AP38606 617 aa12.32□□□□□ -0.44
RTF1-204ENST00000558117 MYO15BQ96JP2 1530 aa12.32□□□□□ -0.44
RTF1-204ENST00000558117 USP46P62068 366 aa12.31□□□□□ -0.44
RTF1-204ENST00000558117 PUS10Q3MIT2 529 aaKnown RBP12.31□□□□□ -0.44
RTF1-204ENST00000558117 BEGAINQ9BUH8 593 aa12.31□□□□□ -0.44
RTF1-204ENST00000558117 ZPR1O75312 459 aa12.28□□□□□ -0.44
RTF1-204ENST00000558117 IFFO2Q5TF58 517 aa12.28□□□□□ -0.44
RTF1-204ENST00000558117 ZNF516Q92618 1163 aa12.27□□□□□ -0.45
RTF1-204ENST00000558117 DIXDC1Q155Q3 683 aa12.26□□□□□ -0.45
RTF1-204ENST00000558117 MORN1Q5T089 497 aa12.26□□□□□ -0.45
RTF1-204ENST00000558117 HOXA2O43364 376 aa12.25□□□□□ -0.45
RTF1-204ENST00000558117 FAM117AQ9C073 453 aa12.25□□□□□ -0.45
RTF1-204ENST00000558117 SPIRE2Q8WWL2 714 aa12.23□□□□□ -0.45
RTF1-204ENST00000558117 TLL1O43897 1013 aa12.22□□□□□ -0.45
RTF1-204ENST00000558117 SCUBE3Q8IX30 993 aa12.22□□□□□ -0.45
RTF1-204ENST00000558117 SLC27A5Q9Y2P5 690 aa12.22□□□□□ -0.45
RTF1-204ENST00000558117 Q3C1V9 767 aa12.21□□□□□ -0.45
RTF1-204ENST00000558117 TBC1D2Q9BYX2 928 aa12.21□□□□□ -0.45
RTF1-204ENST00000558117 FMNL1O95466 1100 aaPredicted RBP12.2□□□□□ -0.46
RTF1-204ENST00000558117 IL27Q8NEV9 243 aa12.2□□□□□ -0.46
RTF1-204ENST00000558117 DDRGK1Q96HY6 314 aa12.2□□□□□ -0.46
RTF1-204ENST00000558117 A0A0G2JS52 829 aa12.19□□□□□ -0.46
RTF1-204ENST00000558117 PLEKHG3A1L390 1219 aa12.19□□□□□ -0.46
RTF1-204ENST00000558117 ADH1BP00325 375 aa12.19□□□□□ -0.46
RTF1-204ENST00000558117 GGCXP38435 758 aa12.18□□□□□ -0.46
RTF1-204ENST00000558117 NKX2-3Q8TAU0 364 aa12.18□□□□□ -0.46
RTF1-204ENST00000558117 HLA-CQ95604 372 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 143.3 ms