RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 TBC1D12O60347 775 aa5.81□□□□□ -1.48
TRAV28-201ENST00000557548 MAP3K9P80192 1104 aa5.81□□□□□ -1.48
TRAV28-201ENST00000557548 AMHR2Q16671 573 aa5.81□□□□□ -1.48
TRAV28-201ENST00000557548 TRIM67Q6ZTA4 783 aa5.81□□□□□ -1.48
TRAV28-201ENST00000557548 GNPATO15228 680 aa5.8□□□□□ -1.48
TRAV28-201ENST00000557548 FECHP22830 423 aa5.8□□□□□ -1.48
TRAV28-201ENST00000557548 LAPTM4BQ86VI4 370 aa5.8□□□□□ -1.48
TRAV28-201ENST00000557548 UPF1Q92900 1129 aaKnown RBP eCLIP5.8□□□□□ -1.48
TRAV28-201ENST00000557548 C1orf115Q9H7X2 142 aa5.8□□□□□ -1.48
TRAV28-201ENST00000557548 OSBPP22059 807 aa5.79□□□□□ -1.48
TRAV28-201ENST00000557548 TTLL12Q14166 644 aaPredicted RBP5.79□□□□□ -1.48
TRAV28-201ENST00000557548 ZNF454Q8N9F8 522 aa5.79□□□□□ -1.48
TRAV28-201ENST00000557548 AAASQ9NRG9 546 aa5.79□□□□□ -1.48
TRAV28-201ENST00000557548 RABGEF1Q9UJ41 708 aa5.79□□□□□ -1.48
TRAV28-201ENST00000557548 ARID3CA6NKF2 412 aa5.78□□□□□ -1.48
TRAV28-201ENST00000557548 FCHSD2O94868 740 aa5.78□□□□□ -1.48
TRAV28-201ENST00000557548 HIC1Q14526 733 aa5.78□□□□□ -1.48
TRAV28-201ENST00000557548 PSMG3-AS1Q96PY0 264 aa5.78□□□□□ -1.48
TRAV28-201ENST00000557548 FAM187AA6NFU0 413 aa5.77□□□□□ -1.49
TRAV28-201ENST00000557548 ST8SIA5O15466 376 aa5.77□□□□□ -1.49
TRAV28-201ENST00000557548 PRR20EP86478 221 aa5.77□□□□□ -1.49
TRAV28-201ENST00000557548 PRR20CP86479 221 aa5.77□□□□□ -1.49
TRAV28-201ENST00000557548 PRR20DP86480 221 aa5.77□□□□□ -1.49
TRAV28-201ENST00000557548 PRR20BP86481 221 aa5.77□□□□□ -1.49
TRAV28-201ENST00000557548 PRR20AP86496 221 aa5.77□□□□□ -1.49
TRAV28-201ENST00000557548 FLIIQ13045 1269 aa5.77□□□□□ -1.49
TRAV28-201ENST00000557548 LCE2CQ5TA81 110 aa5.77□□□□□ -1.49
TRAV28-201ENST00000557548 KCTD17Q8N5Z5 321 aa5.77□□□□□ -1.49
TRAV28-201ENST00000557548 ZSCAN1Q8NBB4 408 aa5.77□□□□□ -1.49
TRAV28-201ENST00000557548 DDX12PQ92771 950 aa5.77□□□□□ -1.49
TRAV28-201ENST00000557548 TSR3Q9UJK0 312 aaKnown RBP5.77□□□□□ -1.49
TRAV28-201ENST00000557548 C11orf95C9JLR9 678 aaPredicted RBP5.76□□□□□ -1.49
TRAV28-201ENST00000557548 PRIM1P49642 420 aaKnown RBP5.76□□□□□ -1.49
TRAV28-201ENST00000557548 TJAP1Q5JTD0 557 aa5.76□□□□□ -1.49
TRAV28-201ENST00000557548 ZFRQ96KR1 1074 aaKnown RBP5.76□□□□□ -1.49
TRAV28-201ENST00000557548 APBB1O00213 710 aa5.75□□□□□ -1.49
TRAV28-201ENST00000557548 TRIM26Q12899 539 aaPredicted RBP5.75□□□□□ -1.49
TRAV28-201ENST00000557548 GIGYF2Q6Y7W6 1299 aaKnown RBP5.75□□□□□ -1.49
TRAV28-201ENST00000557548 ONECUT3O60422 494 aaPredicted RBP5.74□□□□□ -1.49
TRAV28-201ENST00000557548 MS4A1P11836 297 aa5.74□□□□□ -1.49
TRAV28-201ENST00000557548 PTGDRQ13258 359 aa5.74□□□□□ -1.49
TRAV28-201ENST00000557548 OXER1Q8TDS5 423 aa5.74□□□□□ -1.49
TRAV28-201ENST00000557548 TERTO14746 1132 aaKnown RBP5.73□□□□□ -1.49
TRAV28-201ENST00000557548 GOPCQ9HD26 462 aa5.73□□□□□ -1.49
TRAV28-201ENST00000557548 EVI5O60447 810 aa5.72□□□□□ -1.49
TRAV28-201ENST00000557548 GGCXP38435 758 aa5.72□□□□□ -1.49
TRAV28-201ENST00000557548 CLUAP1Q96AJ1 413 aa5.72□□□□□ -1.49
TRAV28-201ENST00000557548 PCMTD1Q96MG8 357 aaPredicted RBP5.72□□□□□ -1.49
TRAV28-201ENST00000557548 REPIN1Q9BWE0 567 aaKnown RBP5.72□□□□□ -1.49
TRAV28-201ENST00000557548 IL21Q9HBE4 155 aa5.72□□□□□ -1.49
TRAV28-201ENST00000557548 HPS5Q9UPZ3 1129 aa5.72□□□□□ -1.49
TRAV28-201ENST00000557548 GMPR2Q9P2T1 348 aaKnown RBP5.71□□□□□ -1.5
TRAV28-201ENST00000557548 HRCP23327 699 aa5.7□□□□□ -1.5
TRAV28-201ENST00000557548 LORP23490 312 aaPredicted RBP5.7□□□□□ -1.5
TRAV28-201ENST00000557548 FOSBP53539 338 aa5.7□□□□□ -1.5
TRAV28-201ENST00000557548 CDHR5Q9HBB8 845 aa5.7□□□□□ -1.5
TRAV28-201ENST00000557548 A6NJR5 290 aa5.69□□□□□ -1.5
TRAV28-201ENST00000557548 SH3D19Q5HYK7 790 aa5.69□□□□□ -1.5
TRAV28-201ENST00000557548 CRIPAKQ8N1N5 446 aa5.69□□□□□ -1.5
TRAV28-201ENST00000557548 CCDC82Q8N4S0 544 aa5.69□□□□□ -1.5
TRAV28-201ENST00000557548 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.69□□□□□ -1.5
TRAV28-201ENST00000557548 TRAK2O60296 914 aa5.68□□□□□ -1.5
TRAV28-201ENST00000557548 MDM2Q00987 491 aaPredicted RBP5.68□□□□□ -1.5
TRAV28-201ENST00000557548 KCNMA1Q12791 1236 aa5.68□□□□□ -1.5
TRAV28-201ENST00000557548 MCM6Q14566 821 aa5.68□□□□□ -1.5
TRAV28-201ENST00000557548 LRCH3Q96II8 777 aa5.68□□□□□ -1.5
TRAV28-201ENST00000557548 TMUB1Q9BVT8 246 aa5.68□□□□□ -1.5
TRAV28-201ENST00000557548 CLCN1P35523 988 aa5.67□□□□□ -1.5
TRAV28-201ENST00000557548 RANGAP1P46060 587 aaPredicted RBP5.67□□□□□ -1.5
TRAV28-201ENST00000557548 MTRQ99707 1265 aa5.67□□□□□ -1.5
TRAV28-201ENST00000557548 PPP1R3GB7ZBB8 358 aa5.66□□□□□ -1.5
TRAV28-201ENST00000557548 SLC19A1P41440 591 aa5.66□□□□□ -1.5
TRAV28-201ENST00000557548 EN1Q05925 392 aaPredicted RBP5.66□□□□□ -1.5
TRAV28-201ENST00000557548 ZNF598Q86UK7 904 aaKnown RBP5.66□□□□□ -1.5
TRAV28-201ENST00000557548 PHOX2BQ99453 314 aa5.66□□□□□ -1.5
TRAV28-201ENST00000557548 GPCPD1Q9NPB8 672 aa5.66□□□□□ -1.5
TRAV28-201ENST00000557548 NPDC1Q9NQX5 325 aaPredicted RBP5.66□□□□□ -1.5
TRAV28-201ENST00000557548 MAP3K7O43318 606 aa5.65□□□□□ -1.5
TRAV28-201ENST00000557548 PROX2Q3B8N5 592 aa5.65□□□□□ -1.5
TRAV28-201ENST00000557548 LCE3BQ5TA77 95 aa5.65□□□□□ -1.5
TRAV28-201ENST00000557548 RBM33Q96EV2 1170 aaKnown RBP5.65□□□□□ -1.5
TRAV28-201ENST00000557548 DACH1Q9UI36 760 aa5.65□□□□□ -1.5
TRAV28-201ENST00000557548 ATP1B4Q9UN42 357 aaPredicted RBP5.65□□□□□ -1.5
TRAV28-201ENST00000557548 PDIA4P13667 645 aaKnown RBP5.64□□□□□ -1.51
TRAV28-201ENST00000557548 SSTR3P32745 418 aaPredicted RBP5.64□□□□□ -1.51
TRAV28-201ENST00000557548 SKIV2LQ15477 1246 aaKnown RBP5.64□□□□□ -1.51
TRAV28-201ENST00000557548 SPRYD7Q5W111 196 aa5.64□□□□□ -1.51
TRAV28-201ENST00000557548 PROSER2Q86WR7 435 aaPredicted RBP5.64□□□□□ -1.51
TRAV28-201ENST00000557548 ZDHHC16Q969W1 377 aa5.64□□□□□ -1.51
TRAV28-201ENST00000557548 POM121Q96HA1 1249 aa5.64□□□□□ -1.51
TRAV28-201ENST00000557548 BEGAINQ9BUH8 593 aa5.64□□□□□ -1.51
TRAV28-201ENST00000557548 ADAM33Q9BZ11 813 aa5.64□□□□□ -1.51
TRAV28-201ENST00000557548 PHF14O94880 888 aa5.63□□□□□ -1.51
TRAV28-201ENST00000557548 PPP4CP60510 307 aa5.63□□□□□ -1.51
TRAV28-201ENST00000557548 TSR1Q2NL82 804 aaKnown RBP5.63□□□□□ -1.51
TRAV28-201ENST00000557548 FAM161AQ3B820 660 aa5.63□□□□□ -1.51
TRAV28-201ENST00000557548 TMEM151AQ8N4L1 468 aa5.63□□□□□ -1.51
TRAV28-201ENST00000557548 PROCA1Q8NCQ7 364 aaPredicted RBP5.63□□□□□ -1.51
TRAV28-201ENST00000557548 NLRP7Q8WX94 980 aa5.63□□□□□ -1.51
TRAV28-201ENST00000557548 EPAS1Q99814 870 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms