RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 ANKLE2Q86XL3 938 aa17.92■□□□□ 0.46
SHMT2-221ENST00000555773 KDM5AP29375 1690 aaKnown RBP17.91■□□□□ 0.46
SHMT2-221ENST00000555773 KDM2AQ9Y2K7 1162 aa17.91■□□□□ 0.46
SHMT2-221ENST00000555773 RIMS2Q9UQ26 1411 aa17.9■□□□□ 0.46
SHMT2-221ENST00000555773 PPP1R15AO75807 674 aaPredicted RBP17.9■□□□□ 0.46
SHMT2-221ENST00000555773 KIF1BO60333 1816 aa17.9■□□□□ 0.46
SHMT2-221ENST00000555773 ZFYVE9O95405 1425 aa17.89■□□□□ 0.46
SHMT2-221ENST00000555773 ARHGAP23Q9P227 1491 aa17.88■□□□□ 0.45
SHMT2-221ENST00000555773 LTKP29376 864 aa17.88■□□□□ 0.45
SHMT2-221ENST00000555773 LMTK3Q96Q04 1460 aa17.88■□□□□ 0.45
SHMT2-221ENST00000555773 SLIT1O75093 1534 aa17.88■□□□□ 0.45
SHMT2-221ENST00000555773 ZNF142P52746 1687 aaPredicted RBP17.87■□□□□ 0.45
SHMT2-221ENST00000555773 UBR1Q8IWV7 1749 aa17.86■□□□□ 0.45
SHMT2-221ENST00000555773 HSPA2P54652 639 aa17.86■□□□□ 0.45
SHMT2-221ENST00000555773 NUTM2DQ5VT03 806 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-221ENST00000555773 ADGRF5Q8IZF2 1346 aa17.85■□□□□ 0.45
SHMT2-221ENST00000555773 NEXMIFQ5QGS0 1516 aa17.83■□□□□ 0.45
SHMT2-221ENST00000555773 MYOM2P54296 1465 aa17.83■□□□□ 0.45
SHMT2-221ENST00000555773 PLEKHG1Q9ULL1 1385 aa17.82■□□□□ 0.44
SHMT2-221ENST00000555773 SCAF11Q99590 1463 aaKnown RBP17.82■□□□□ 0.44
SHMT2-221ENST00000555773 NCKAP5LQ9HCH0 1330 aa17.81■□□□□ 0.44
SHMT2-221ENST00000555773 BCANQ96GW7 911 aa17.81■□□□□ 0.44
SHMT2-221ENST00000555773 C14orf93Q9H972 538 aaKnown RBP17.81■□□□□ 0.44
SHMT2-221ENST00000555773 NBPF8Q3BBV2 869 aa17.8■□□□□ 0.44
SHMT2-221ENST00000555773 NRXN1Q9ULB1 1477 aa17.8■□□□□ 0.44
SHMT2-221ENST00000555773 TBX22Q9Y458 520 aa17.79■□□□□ 0.44
SHMT2-221ENST00000555773 PRAG1Q86YV5 1406 aa17.79■□□□□ 0.44
SHMT2-221ENST00000555773 DMRT2Q9Y5R5 561 aa17.78■□□□□ 0.44
SHMT2-221ENST00000555773 MED14O60244 1454 aa17.77■□□□□ 0.44
SHMT2-221ENST00000555773 PIK3C2GO75747 1445 aa17.77■□□□□ 0.44
SHMT2-221ENST00000555773 MYO5BQ9ULV0 1848 aa17.77■□□□□ 0.43
SHMT2-221ENST00000555773 NPHP4O75161 1426 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-221ENST00000555773 CFAP70Q5T0N1 1121 aa17.76■□□□□ 0.43
SHMT2-221ENST00000555773 PPLO60437 1756 aa17.75■□□□□ 0.43
SHMT2-221ENST00000555773 SLC26A8Q96RN1 970 aa17.74■□□□□ 0.43
SHMT2-221ENST00000555773 SENP3Q9H4L4 574 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-221ENST00000555773 IFT172Q9UG01 1749 aa17.72■□□□□ 0.43
SHMT2-221ENST00000555773 ADAMTS13Q76LX8 1427 aa17.72■□□□□ 0.43
SHMT2-221ENST00000555773 NBPF1Q3BBV0 1214 aa17.71■□□□□ 0.43
SHMT2-221ENST00000555773 SETBP1Q9Y6X0 1596 aa17.7■□□□□ 0.42
SHMT2-221ENST00000555773 PIK3R4Q99570 1358 aa17.69■□□□□ 0.42
SHMT2-221ENST00000555773 ROCK2O75116 1388 aaKnown RBP17.68■□□□□ 0.42
SHMT2-221ENST00000555773 TMEM132EQ6IEE7 984 aa17.68■□□□□ 0.42
SHMT2-221ENST00000555773 CARD11Q9BXL7 1154 aa17.68■□□□□ 0.42
SHMT2-221ENST00000555773 GPRASP1Q5JY77 1395 aa17.67■□□□□ 0.42
SHMT2-221ENST00000555773 ALKQ9UM73 1620 aa17.67■□□□□ 0.42
SHMT2-221ENST00000555773 METP08581 1390 aa17.66■□□□□ 0.42
SHMT2-221ENST00000555773 RALGAPBQ86X10 1494 aa17.66■□□□□ 0.42
SHMT2-221ENST00000555773 KCNA6P17658 529 aa17.65■□□□□ 0.42
SHMT2-221ENST00000555773 SIRT1Q96EB6 747 aa17.65■□□□□ 0.42
SHMT2-221ENST00000555773 AMOTL2Q9Y2J4 779 aa17.64■□□□□ 0.41
SHMT2-221ENST00000555773 DIP2AQ14689 1571 aa17.64■□□□□ 0.41
SHMT2-221ENST00000555773 LRPPRCP42704 1394 aaKnown RBP17.64■□□□□ 0.41
SHMT2-221ENST00000555773 ABCC11Q96J66 1382 aa17.64■□□□□ 0.41
SHMT2-221ENST00000555773 NRXN3Q9Y4C0 1643 aa17.62■□□□□ 0.41
SHMT2-221ENST00000555773 POLR1AO95602 1720 aaPredicted RBP17.62■□□□□ 0.41
SHMT2-221ENST00000555773 KIAA1210Q9ULL0 1709 aa17.62■□□□□ 0.41
SHMT2-221ENST00000555773 STRCQ7RTU9 1775 aa17.62■□□□□ 0.41
SHMT2-221ENST00000555773 STK26Q9P289 416 aa17.62■□□□□ 0.41
SHMT2-221ENST00000555773 YTHDC2Q9H6S0 1430 aaKnown RBP17.62■□□□□ 0.41
SHMT2-221ENST00000555773 LAMC1P11047 1609 aa17.61■□□□□ 0.41
SHMT2-221ENST00000555773 IQGAP1P46940 1657 aa17.61■□□□□ 0.41
SHMT2-221ENST00000555773 TRAK1Q9UPV9 953 aa17.61■□□□□ 0.41
SHMT2-221ENST00000555773 ADGRB1O14514 1584 aa17.61■□□□□ 0.41
SHMT2-221ENST00000555773 TRPM1Q7Z4N2 1603 aa17.59■□□□□ 0.41
SHMT2-221ENST00000555773 EIF4G2P78344 907 aaKnown RBP eCLIP17.59■□□□□ 0.41
SHMT2-221ENST00000555773 PTPRUQ92729 1446 aa17.58■□□□□ 0.41
SHMT2-221ENST00000555773 TECPR2O15040 1411 aa17.56■□□□□ 0.4
SHMT2-221ENST00000555773 EIF3AQ14152 1382 aaKnown RBP17.56■□□□□ 0.4
SHMT2-221ENST00000555773 SLC24A1O60721 1099 aa17.56■□□□□ 0.4
SHMT2-221ENST00000555773 ASXL1Q8IXJ9 1541 aa17.56■□□□□ 0.4
SHMT2-221ENST00000555773 POGKQ9P215 609 aa17.55■□□□□ 0.4
SHMT2-221ENST00000555773 FAM135BQ49AJ0 1406 aa17.55■□□□□ 0.4
SHMT2-221ENST00000555773 USP47Q96K76 1375 aa17.54■□□□□ 0.4
SHMT2-221ENST00000555773 PRAM1Q96QH2 718 aa17.54■□□□□ 0.4
SHMT2-221ENST00000555773 ZNF335Q9H4Z2 1342 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-221ENST00000555773 CENPJQ9HC77 1338 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-221ENST00000555773 SETD1AO15047 1707 aaKnown RBP17.53■□□□□ 0.4
SHMT2-221ENST00000555773 ST20-MTHFSA0A0A6YYL1 179 aa17.53■□□□□ 0.4
SHMT2-221ENST00000555773 HSPA5P11021 654 aaKnown RBP17.53■□□□□ 0.4
SHMT2-221ENST00000555773 WAPLQ7Z5K2 1190 aa17.53■□□□□ 0.4
SHMT2-221ENST00000555773 PROSER2Q86WR7 435 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-221ENST00000555773 ROBO2Q9HCK4 1378 aa17.53■□□□□ 0.4
SHMT2-221ENST00000555773 DLC1Q96QB1 1528 aa17.52■□□□□ 0.4
SHMT2-221ENST00000555773 PTCH1Q13635 1447 aa17.52■□□□□ 0.4
SHMT2-221ENST00000555773 NCOA3Q9Y6Q9 1424 aa17.49■□□□□ 0.39
SHMT2-221ENST00000555773 NKTRP30414 1462 aaKnown RBP17.49■□□□□ 0.39
SHMT2-221ENST00000555773 CHD2O14647 1828 aaKnown RBP17.47■□□□□ 0.39
SHMT2-221ENST00000555773 SAFB2Q14151 953 aaKnown RBP eCLIP17.47■□□□□ 0.39
SHMT2-221ENST00000555773 TESK2Q96S53 571 aa17.47■□□□□ 0.39
SHMT2-221ENST00000555773 NWD1Q149M9 1564 aa17.47■□□□□ 0.39
SHMT2-221ENST00000555773 CPS1P31327 1500 aa17.47■□□□□ 0.39
SHMT2-221ENST00000555773 PLEKHH1Q9ULM0 1364 aa17.46■□□□□ 0.39
SHMT2-221ENST00000555773 SBNO2Q9Y2G9 1366 aa17.46■□□□□ 0.39
SHMT2-221ENST00000555773 XRN1Q8IZH2 1706 aaKnown RBP17.45■□□□□ 0.38
SHMT2-221ENST00000555773 TMEM94Q12767 1356 aa17.44■□□□□ 0.38
SHMT2-221ENST00000555773 TMF1P82094 1093 aa17.44■□□□□ 0.38
SHMT2-221ENST00000555773 C14orf37Q86TY3 774 aa17.44■□□□□ 0.38
SHMT2-221ENST00000555773 C19orf44Q9H6X5 657 aa17.44■□□□□ 0.38
SHMT2-221ENST00000555773 MINK1Q8N4C8 1332 aaPredicted RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms