RNA–Protein interactions for RNA: ENST00000553882.1

ACTN1-211, Transcript of actinin alpha 1, humanhuman

TSL 2

Gene ACTN1, Length 2,636 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-211ENST00000553882 ADGRL1O94910 1474 aa19.28■□□□□ 0.68
ACTN1-211ENST00000553882 NOP58Q9Y2X3 529 aaKnown RBP19.28■□□□□ 0.68
ACTN1-211ENST00000553882 DEPDC5O75140 1603 aa19.28■□□□□ 0.68
ACTN1-211ENST00000553882 TET3O43151 1660 aa19.27■□□□□ 0.68
ACTN1-211ENST00000553882 ANP32AP39687 249 aaKnown RBP19.27■□□□□ 0.68
ACTN1-211ENST00000553882 INO80Q9ULG1 1556 aaPredicted RBP19.25■□□□□ 0.67
ACTN1-211ENST00000553882 ADGRF5Q8IZF2 1346 aa19.25■□□□□ 0.67
ACTN1-211ENST00000553882 ZMYM4Q5VZL5 1548 aa19.25■□□□□ 0.67
ACTN1-211ENST00000553882 INSRP06213 1382 aa19.25■□□□□ 0.67
ACTN1-211ENST00000553882 PLEKHH1Q9ULM0 1364 aa19.25■□□□□ 0.67
ACTN1-211ENST00000553882 STAC3Q96MF2 364 aa19.24■□□□□ 0.67
ACTN1-211ENST00000553882 CRBNQ96SW2 442 aa19.24■□□□□ 0.67
ACTN1-211ENST00000553882 ABCA9Q8IUA7 1624 aa19.24■□□□□ 0.67
ACTN1-211ENST00000553882 EIF3AQ14152 1382 aaKnown RBP19.24■□□□□ 0.67
ACTN1-211ENST00000553882 SYNMO15061 1565 aa19.24■□□□□ 0.67
ACTN1-211ENST00000553882 C20orf194Q5TEA3 1177 aa19.23■□□□□ 0.67
ACTN1-211ENST00000553882 SKAP1Q86WV1 359 aa19.23■□□□□ 0.67
ACTN1-211ENST00000553882 CCDC146Q8IYE0 955 aa19.22■□□□□ 0.67
ACTN1-211ENST00000553882 ASXL1Q8IXJ9 1541 aa19.22■□□□□ 0.67
ACTN1-211ENST00000553882 NPM2Q86SE8 214 aaKnown RBP19.22■□□□□ 0.67
ACTN1-211ENST00000553882 VWDEQ8N2E2 1590 aa19.22■□□□□ 0.67
ACTN1-211ENST00000553882 CHGAP10645 457 aaKnown RBP19.21■□□□□ 0.67
ACTN1-211ENST00000553882 NBR1Q14596 966 aa19.21■□□□□ 0.66
ACTN1-211ENST00000553882 IPO9Q96P70 1041 aaKnown RBP19.21■□□□□ 0.66
ACTN1-211ENST00000553882 ASXL2Q76L83 1435 aa19.2■□□□□ 0.66
ACTN1-211ENST00000553882 MYOM1P52179 1685 aa19.2■□□□□ 0.66
ACTN1-211ENST00000553882 MROH1Q8NDA8 1641 aa19.19■□□□□ 0.66
ACTN1-211ENST00000553882 DUSP27Q5VZP5 1158 aa19.19■□□□□ 0.66
ACTN1-211ENST00000553882 TCERG1O14776 1098 aaKnown RBP19.18■□□□□ 0.66
ACTN1-211ENST00000553882 ABCA6Q8N139 1617 aa19.17■□□□□ 0.66
ACTN1-211ENST00000553882 MAP3K4Q9Y6R4 1608 aa19.16■□□□□ 0.66
ACTN1-211ENST00000553882 PDE4AP27815 886 aa19.16■□□□□ 0.66
ACTN1-211ENST00000553882 GOLGA2Q08379 1002 aa19.16■□□□□ 0.66
ACTN1-211ENST00000553882 KDM5AP29375 1690 aaKnown RBP19.16■□□□□ 0.66
ACTN1-211ENST00000553882 CARD14Q9BXL6 1004 aa19.16■□□□□ 0.66
ACTN1-211ENST00000553882 ERVK-7P63135 1459 aa19.15■□□□□ 0.66
ACTN1-211ENST00000553882 PIK3C2GO75747 1445 aa19.15■□□□□ 0.66
ACTN1-211ENST00000553882 ZBTB47Q9UFB7 747 aaPredicted RBP19.15■□□□□ 0.66
ACTN1-211ENST00000553882 ZNF521Q96K83 1311 aa19.14■□□□□ 0.66
ACTN1-211ENST00000553882 EFCAB6Q5THR3 1501 aa19.14■□□□□ 0.66
ACTN1-211ENST00000553882 APAF1O14727 1248 aa19.14■□□□□ 0.65
ACTN1-211ENST00000553882 CFAP65Q6ZU64 1925 aaKnown RBP19.14■□□□□ 0.65
ACTN1-211ENST00000553882 GGT6Q6P531 493 aa19.14■□□□□ 0.65
ACTN1-211ENST00000553882 KIDINS220Q9ULH0 1771 aa19.13■□□□□ 0.65
ACTN1-211ENST00000553882 PPRC1Q5VV67 1664 aaKnown RBP19.13■□□□□ 0.65
ACTN1-211ENST00000553882 KIF1BO60333 1816 aa19.13■□□□□ 0.65
ACTN1-211ENST00000553882 KIAA1210Q9ULL0 1709 aa19.13■□□□□ 0.65
ACTN1-211ENST00000553882 MYOM2P54296 1465 aa19.12■□□□□ 0.65
ACTN1-211ENST00000553882 TRAK1Q9UPV9 953 aa19.12■□□□□ 0.65
ACTN1-211ENST00000553882 MROH2AA6NES4 1674 aa19.12■□□□□ 0.65
ACTN1-211ENST00000553882 SPINK5Q9NQ38 1064 aaPredicted RBP19.12■□□□□ 0.65
ACTN1-211ENST00000553882 NOS1P29475 1434 aa19.12■□□□□ 0.65
ACTN1-211ENST00000553882 NPC1L1Q9UHC9 1359 aa19.11■□□□□ 0.65
ACTN1-211ENST00000553882 BACH2Q9BYV9 841 aa19.11■□□□□ 0.65
ACTN1-211ENST00000553882 ZNF518AQ6AHZ1 1483 aa19.1■□□□□ 0.65
ACTN1-211ENST00000553882 TNNT2P45379 298 aaPredicted RBP19.09■□□□□ 0.65
ACTN1-211ENST00000553882 SLFN5Q08AF3 891 aa19.09■□□□□ 0.65
ACTN1-211ENST00000553882 NPM1P06748 294 aaKnown RBP eCLIP19.08■□□□□ 0.65
ACTN1-211ENST00000553882 TMEM132EQ6IEE7 984 aa19.08■□□□□ 0.65
ACTN1-211ENST00000553882 CENPJQ9HC77 1338 aaPredicted RBP19.08■□□□□ 0.65
ACTN1-211ENST00000553882 MS4A1P11836 297 aa19.08■□□□□ 0.64
ACTN1-211ENST00000553882 NEURL4Q96JN8 1562 aa19.07■□□□□ 0.64
ACTN1-211ENST00000553882 NUTM2DQ5VT03 806 aaPredicted RBP19.07■□□□□ 0.64
ACTN1-211ENST00000553882 BCL11AQ9H165 835 aa19.07■□□□□ 0.64
ACTN1-211ENST00000553882 DMRT2Q9Y5R5 561 aa19.06■□□□□ 0.64
ACTN1-211ENST00000553882 NPATQ14207 1427 aa19.06■□□□□ 0.64
ACTN1-211ENST00000553882 IFT172Q9UG01 1749 aa19.05■□□□□ 0.64
ACTN1-211ENST00000553882 SLC12A5Q9H2X9 1139 aa19.05■□□□□ 0.64
ACTN1-211ENST00000553882 SENP3Q9H4L4 574 aaPredicted RBP19.05■□□□□ 0.64
ACTN1-211ENST00000553882 BCAR3O75815 825 aa19.04■□□□□ 0.64
ACTN1-211ENST00000553882 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.04■□□□□ 0.64
ACTN1-211ENST00000553882 CD109Q6YHK3 1445 aa19.03■□□□□ 0.64
ACTN1-211ENST00000553882 NRXN1Q9ULB1 1477 aa19.03■□□□□ 0.64
ACTN1-211ENST00000553882 KDM2BQ8NHM5 1336 aa19.03■□□□□ 0.64
ACTN1-211ENST00000553882 DEKP35659 375 aaKnown RBP19.03■□□□□ 0.64
ACTN1-211ENST00000553882 ADGRB3O60242 1522 aa19.03■□□□□ 0.64
ACTN1-211ENST00000553882 NSD3Q9BZ95 1437 aa19.02■□□□□ 0.64
ACTN1-211ENST00000553882 NEUROD2Q15784 382 aa19.02■□□□□ 0.63
ACTN1-211ENST00000553882 TRMT2AQ8IZ69 625 aaKnown RBP19.02■□□□□ 0.63
ACTN1-211ENST00000553882 MORC1Q86VD1 984 aa19.01■□□□□ 0.63
ACTN1-211ENST00000553882 LMTK2Q8IWU2 1503 aa19.01■□□□□ 0.63
ACTN1-211ENST00000553882 POGZQ7Z3K3 1410 aa19■□□□□ 0.63
ACTN1-211ENST00000553882 NKTRP30414 1462 aaKnown RBP19■□□□□ 0.63
ACTN1-211ENST00000553882 SBNO2Q9Y2G9 1366 aa19■□□□□ 0.63
ACTN1-211ENST00000553882 C14orf93Q9H972 538 aaKnown RBP19■□□□□ 0.63
ACTN1-211ENST00000553882 RAPGEF3O95398 923 aa19■□□□□ 0.63
ACTN1-211ENST00000553882 FRMPD1Q5SYB0 1578 aa19■□□□□ 0.63
ACTN1-211ENST00000553882 E9PSI1 815 aa18.99■□□□□ 0.63
ACTN1-211ENST00000553882 CENPQQ7L2Z9 268 aaPredicted RBP18.99■□□□□ 0.63
ACTN1-211ENST00000553882 RRP7AQ9Y3A4 280 aaKnown RBP18.98■□□□□ 0.63
ACTN1-211ENST00000553882 MYO3AQ8NEV4 1616 aa18.98■□□□□ 0.63
ACTN1-211ENST00000553882 LAS1LQ9Y4W2 734 aaKnown RBP18.97■□□□□ 0.63
ACTN1-211ENST00000553882 SAFB2Q14151 953 aaKnown RBP eCLIP18.96■□□□□ 0.63
ACTN1-211ENST00000553882 WWC1Q8IX03 1113 aa18.96■□□□□ 0.63
ACTN1-211ENST00000553882 RGS3P49796 1198 aa18.95■□□□□ 0.62
ACTN1-211ENST00000553882 RTL5Q5HYW3 569 aaPredicted RBP18.95■□□□□ 0.62
ACTN1-211ENST00000553882 POLR3AO14802 1390 aaPredicted RBP18.95■□□□□ 0.62
ACTN1-211ENST00000553882 SETBP1Q9Y6X0 1596 aa18.95■□□□□ 0.62
ACTN1-211ENST00000553882 PPLO60437 1756 aa18.95■□□□□ 0.62
ACTN1-211ENST00000553882 QRICH2Q9H0J4 1663 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms