RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CLUAP1Q96AJ1 413 aa7.37□□□□□ -1.23
LIMA1-215ENST00000552823 ANP32EQ9BTT0 268 aa7.37□□□□□ -1.23
LIMA1-215ENST00000552823 SPINK5Q9NQ38 1064 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-215ENST00000552823 CENPJQ9HC77 1338 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-215ENST00000552823 BRD4O60885 1362 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-215ENST00000552823 UHRF1BP1Q6BDS2 1440 aa7.36□□□□□ -1.23
LIMA1-215ENST00000552823 WDR7Q9Y4E6 1490 aa7.36□□□□□ -1.23
LIMA1-215ENST00000552823 U2AF1L5P0DN76 240 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-215ENST00000552823 U2AF1Q01081 240 aaKnown RBP eCLIP7.36□□□□□ -1.23
LIMA1-215ENST00000552823 AMER1Q5JTC6 1135 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-215ENST00000552823 DMRT2Q9Y5R5 561 aa7.36□□□□□ -1.23
LIMA1-215ENST00000552823 NOS1P29475 1434 aa7.36□□□□□ -1.23
LIMA1-215ENST00000552823 BCAR3O75815 825 aa7.36□□□□□ -1.23
LIMA1-215ENST00000552823 ADRA2BP18089 450 aa7.36□□□□□ -1.23
LIMA1-215ENST00000552823 LAS1LQ9Y4W2 734 aaKnown RBP7.35□□□□□ -1.23
LIMA1-215ENST00000552823 KDM5CP41229 1560 aa7.35□□□□□ -1.23
LIMA1-215ENST00000552823 ZCCHC11Q5TAX3 1644 aaKnown RBP7.35□□□□□ -1.23
LIMA1-215ENST00000552823 MTHFSP49914 203 aa7.35□□□□□ -1.23
LIMA1-215ENST00000552823 WAPLQ7Z5K2 1190 aa7.35□□□□□ -1.23
LIMA1-215ENST00000552823 ADCY10Q96PN6 1610 aa7.35□□□□□ -1.23
LIMA1-215ENST00000552823 PREX2Q70Z35 1606 aa7.35□□□□□ -1.23
LIMA1-215ENST00000552823 DUOX2Q9NRD8 1548 aa7.34□□□□□ -1.23
LIMA1-215ENST00000552823 MYT1Q01538 1121 aa7.34□□□□□ -1.23
LIMA1-215ENST00000552823 GOLGA2Q08379 1002 aa7.34□□□□□ -1.23
LIMA1-215ENST00000552823 TCERG1O14776 1098 aaKnown RBP7.34□□□□□ -1.23
LIMA1-215ENST00000552823 PRAM1Q96QH2 718 aa7.33□□□□□ -1.24
LIMA1-215ENST00000552823 ARHGEF5Q12774 1597 aa7.33□□□□□ -1.24
LIMA1-215ENST00000552823 PAK3O75914 559 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-215ENST00000552823 SLC4A3P48751 1232 aa7.33□□□□□ -1.24
LIMA1-215ENST00000552823 SMG6Q86US8 1419 aaKnown RBP7.33□□□□□ -1.24
LIMA1-215ENST00000552823 CROCC2H7BZ55 1655 aa7.33□□□□□ -1.24
LIMA1-215ENST00000552823 NCKAP5LQ9HCH0 1330 aa7.33□□□□□ -1.24
LIMA1-215ENST00000552823 ATP10AO60312 1499 aa7.33□□□□□ -1.24
LIMA1-215ENST00000552823 MYO5CQ9NQX4 1742 aa7.32□□□□□ -1.24
LIMA1-215ENST00000552823 CEBPAP49715 358 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-215ENST00000552823 MAGI2Q86UL8 1455 aa7.32□□□□□ -1.24
LIMA1-215ENST00000552823 PARD3Q8TEW0 1356 aa7.32□□□□□ -1.24
LIMA1-215ENST00000552823 KDM5DQ9BY66 1539 aa7.32□□□□□ -1.24
LIMA1-215ENST00000552823 PRKCSHP14314 528 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-215ENST00000552823 TRHP20396 242 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-215ENST00000552823 PANK1Q8TE04 598 aa7.32□□□□□ -1.24
LIMA1-215ENST00000552823 PPP6R1Q9UPN7 881 aa7.32□□□□□ -1.24
LIMA1-215ENST00000552823 TNNQ9UQP3 1299 aa7.32□□□□□ -1.24
LIMA1-215ENST00000552823 COG6Q9Y2V7 657 aa7.32□□□□□ -1.24
LIMA1-215ENST00000552823 PLEKHH1Q9ULM0 1364 aa7.32□□□□□ -1.24
LIMA1-215ENST00000552823 ELL2O00472 640 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-215ENST00000552823 VGFO15240 615 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-215ENST00000552823 ANP32AP39687 249 aaKnown RBP7.31□□□□□ -1.24
LIMA1-215ENST00000552823 TXNDC2Q86VQ3 553 aa7.31□□□□□ -1.24
LIMA1-215ENST00000552823 CABP1Q9NZU7 370 aa7.31□□□□□ -1.24
LIMA1-215ENST00000552823 TCP11L2Q8N4U5 519 aa7.3□□□□□ -1.24
LIMA1-215ENST00000552823 RBM33Q96EV2 1170 aaKnown RBP7.3□□□□□ -1.24
LIMA1-215ENST00000552823 EIF3AQ14152 1382 aaKnown RBP7.3□□□□□ -1.24
LIMA1-215ENST00000552823 ABCC1P33527 1531 aa7.3□□□□□ -1.24
LIMA1-215ENST00000552823 HMOX1P09601 288 aa7.3□□□□□ -1.24
LIMA1-215ENST00000552823 TSR2Q969E8 191 aaKnown RBP7.3□□□□□ -1.24
LIMA1-215ENST00000552823 ZRANB1Q9UGI0 708 aa7.3□□□□□ -1.24
LIMA1-215ENST00000552823 YEATS2Q9ULM3 1422 aa7.3□□□□□ -1.24
LIMA1-215ENST00000552823 ZBTB7CA1YPR0 619 aa7.3□□□□□ -1.24
LIMA1-215ENST00000552823 C14orf93Q9H972 538 aaKnown RBP7.3□□□□□ -1.24
LIMA1-215ENST00000552823 ATP7AQ04656 1500 aa7.29□□□□□ -1.24
LIMA1-215ENST00000552823 NSD3Q9BZ95 1437 aa7.29□□□□□ -1.24
LIMA1-215ENST00000552823 COL17A1Q9UMD9 1497 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-215ENST00000552823 SCAF11Q99590 1463 aaKnown RBP7.29□□□□□ -1.24
LIMA1-215ENST00000552823 LRPPRCP42704 1394 aaKnown RBP7.29□□□□□ -1.24
LIMA1-215ENST00000552823 GPRASP1Q5JY77 1395 aa7.29□□□□□ -1.24
LIMA1-215ENST00000552823 DUSP27Q5VZP5 1158 aa7.29□□□□□ -1.24
LIMA1-215ENST00000552823 PDE3BQ13370 1112 aa7.28□□□□□ -1.24
LIMA1-215ENST00000552823 CFAP53Q96M91 514 aa7.28□□□□□ -1.24
LIMA1-215ENST00000552823 ZBTB47Q9UFB7 747 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-215ENST00000552823 MAST1Q9Y2H9 1570 aa7.28□□□□□ -1.24
LIMA1-215ENST00000552823 ERICH6BQ5W0A0 696 aa7.28□□□□□ -1.24
LIMA1-215ENST00000552823 SLC26A8Q96RN1 970 aa7.28□□□□□ -1.24
LIMA1-215ENST00000552823 THUMPD2Q9BTF0 503 aaKnown RBP7.28□□□□□ -1.24
LIMA1-215ENST00000552823 EVC2Q86UK5 1308 aa7.28□□□□□ -1.24
LIMA1-215ENST00000552823 CLASP1Q7Z460 1538 aa7.28□□□□□ -1.24
LIMA1-215ENST00000552823 NPATQ14207 1427 aa7.28□□□□□ -1.24
LIMA1-215ENST00000552823 PDE4AP27815 886 aa7.28□□□□□ -1.24
LIMA1-215ENST00000552823 CDK19Q9BWU1 502 aa7.28□□□□□ -1.24
LIMA1-215ENST00000552823 PRDM15P57071 1507 aaPredicted RBP7.27□□□□□ -1.24
LIMA1-215ENST00000552823 C14orf37Q86TY3 774 aa7.27□□□□□ -1.25
LIMA1-215ENST00000552823 SHROOM2Q13796 1616 aa7.27□□□□□ -1.25
LIMA1-215ENST00000552823 SLFN5Q08AF3 891 aa7.26□□□□□ -1.25
LIMA1-215ENST00000552823 NUTM2GQ5VZR2 741 aa7.26□□□□□ -1.25
LIMA1-215ENST00000552823 ZFYVE16Q7Z3T8 1539 aa7.26□□□□□ -1.25
LIMA1-215ENST00000552823 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-215ENST00000552823 CGNL1Q0VF96 1302 aa7.26□□□□□ -1.25
LIMA1-215ENST00000552823 RTEL1-TNFRSF6BF6WH68 1400 aa7.26□□□□□ -1.25
LIMA1-215ENST00000552823 UHRF1BP1LA0JNW5 1464 aa7.26□□□□□ -1.25
LIMA1-215ENST00000552823 WWC1Q8IX03 1113 aa7.26□□□□□ -1.25
LIMA1-215ENST00000552823 NOP58Q9Y2X3 529 aaKnown RBP7.26□□□□□ -1.25
LIMA1-215ENST00000552823 RRS1Q15050 365 aaKnown RBP7.25□□□□□ -1.25
LIMA1-215ENST00000552823 MAPK8IP3Q9UPT6 1336 aa7.25□□□□□ -1.25
LIMA1-215ENST00000552823 CLTCL1P53675 1640 aa7.25□□□□□ -1.25
LIMA1-215ENST00000552823 DAXXQ9UER7 740 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-215ENST00000552823 TRPM1Q7Z4N2 1603 aa7.25□□□□□ -1.25
LIMA1-215ENST00000552823 E9PCH4 1651 aa7.25□□□□□ -1.25
LIMA1-215ENST00000552823 ZNF518AQ6AHZ1 1483 aa7.25□□□□□ -1.25
LIMA1-215ENST00000552823 PMFBP1Q8TBY8 1022 aa7.25□□□□□ -1.25
LIMA1-215ENST00000552823 HDGFL2Q7Z4V5 671 aaPredicted RBP7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms