RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 TCP11L2Q8N4U5 519 aa19.02■□□□□ 0.63
CUX1-214ENST00000550008 CHMP4BQ9H444 224 aaKnown RBP19.01■□□□□ 0.63
CUX1-214ENST00000550008 DIAPH1O60610 1272 aaKnown RBP19.01■□□□□ 0.63
CUX1-214ENST00000550008 PRAM1Q96QH2 718 aa19.01■□□□□ 0.63
CUX1-214ENST00000550008 RPRD2Q5VT52 1461 aaKnown RBP19.01■□□□□ 0.63
CUX1-214ENST00000550008 PLEKHH2Q8IVE3 1493 aa19■□□□□ 0.63
CUX1-214ENST00000550008 CASC1Q6TDU7 716 aa19■□□□□ 0.63
CUX1-214ENST00000550008 PMFBP1Q8TBY8 1022 aa19■□□□□ 0.63
CUX1-214ENST00000550008 STAC3Q96MF2 364 aa19■□□□□ 0.63
CUX1-214ENST00000550008 GLIPR1L2Q4G1C9 344 aa18.99■□□□□ 0.63
CUX1-214ENST00000550008 CALD1Q05682 793 aaKnown RBP18.98■□□□□ 0.63
CUX1-214ENST00000550008 CENPQQ7L2Z9 268 aaPredicted RBP18.98■□□□□ 0.63
CUX1-214ENST00000550008 RUNDC1Q96C34 613 aa18.98■□□□□ 0.63
CUX1-214ENST00000550008 UGGT2Q9NYU1 1516 aa18.98■□□□□ 0.63
CUX1-214ENST00000550008 ERBINQ96RT1 1412 aa18.98■□□□□ 0.63
CUX1-214ENST00000550008 ATP10BO94823 1461 aa18.98■□□□□ 0.63
CUX1-214ENST00000550008 TAOK2Q9UL54 1235 aa18.97■□□□□ 0.63
CUX1-214ENST00000550008 NUTM2GQ5VZR2 741 aa18.96■□□□□ 0.63
CUX1-214ENST00000550008 ZKSCAN2Q63HK3 967 aa18.96■□□□□ 0.63
CUX1-214ENST00000550008 BCAR3O75815 825 aa18.96■□□□□ 0.63
CUX1-214ENST00000550008 HSCBQ8IWL3 235 aa18.96■□□□□ 0.63
CUX1-214ENST00000550008 ADGRF5Q8IZF2 1346 aa18.95■□□□□ 0.62
CUX1-214ENST00000550008 TXNDC2Q86VQ3 553 aa18.95■□□□□ 0.62
CUX1-214ENST00000550008 CSB-PGBD3P0DP91 1061 aa18.94■□□□□ 0.62
CUX1-214ENST00000550008 SKAP1Q86WV1 359 aa18.94■□□□□ 0.62
CUX1-214ENST00000550008 NECTIN2Q92692 538 aa18.94■□□□□ 0.62
CUX1-214ENST00000550008 GOLGA6L22H0YM25 854 aa18.94■□□□□ 0.62
CUX1-214ENST00000550008 STK31Q9BXU1 1019 aa18.93■□□□□ 0.62
CUX1-214ENST00000550008 GZF1Q9H116 711 aaPredicted RBP18.93■□□□□ 0.62
CUX1-214ENST00000550008 FOXD4L1Q9NU39 408 aa18.93■□□□□ 0.62
CUX1-214ENST00000550008 CABP1Q9NZU7 370 aa18.92■□□□□ 0.62
CUX1-214ENST00000550008 KIF14Q15058 1648 aa18.92■□□□□ 0.62
CUX1-214ENST00000550008 TSR2Q969E8 191 aaKnown RBP18.92■□□□□ 0.62
CUX1-214ENST00000550008 ZNF330Q9Y3S2 320 aaPredicted RBP18.92■□□□□ 0.62
CUX1-214ENST00000550008 FAM161AQ3B820 660 aa18.91■□□□□ 0.62
CUX1-214ENST00000550008 ANKRD45Q5TZF3 282 aa18.89■□□□□ 0.62
CUX1-214ENST00000550008 KCNJ4P48050 445 aa18.89■□□□□ 0.61
CUX1-214ENST00000550008 DZIP1LQ8IYY4 767 aaKnown RBP18.89■□□□□ 0.61
CUX1-214ENST00000550008 KIF21AQ7Z4S6 1674 aa18.87■□□□□ 0.61
CUX1-214ENST00000550008 LMOD3Q0VAK6 560 aa18.87■□□□□ 0.61
CUX1-214ENST00000550008 FBXO31Q5XUX0 539 aaPredicted RBP18.87■□□□□ 0.61
CUX1-214ENST00000550008 RAPGEF6Q8TEU7 1601 aa18.87■□□□□ 0.61
CUX1-214ENST00000550008 SLC26A8Q96RN1 970 aa18.87■□□□□ 0.61
CUX1-214ENST00000550008 CTTNBP2Q8WZ74 1663 aa18.86■□□□□ 0.61
CUX1-214ENST00000550008 FANCIQ9NVI1 1328 aa18.86■□□□□ 0.61
CUX1-214ENST00000550008 CDK19Q9BWU1 502 aa18.86■□□□□ 0.61
CUX1-214ENST00000550008 PRKAR2BP31323 418 aa18.86■□□□□ 0.61
CUX1-214ENST00000550008 DISP3Q9P2K9 1392 aa18.85■□□□□ 0.61
CUX1-214ENST00000550008 EXOSC9Q06265 439 aaKnown RBP18.85■□□□□ 0.61
CUX1-214ENST00000550008 CD109Q6YHK3 1445 aa18.84■□□□□ 0.61
CUX1-214ENST00000550008 C20orf194Q5TEA3 1177 aa18.84■□□□□ 0.61
CUX1-214ENST00000550008 WAPLQ7Z5K2 1190 aa18.84■□□□□ 0.61
CUX1-214ENST00000550008 ADGRL1O94910 1474 aa18.84■□□□□ 0.61
CUX1-214ENST00000550008 IDI1Q13907 227 aa18.83■□□□□ 0.61
CUX1-214ENST00000550008 TRIM44Q96DX7 344 aaPredicted RBP18.83■□□□□ 0.6
CUX1-214ENST00000550008 LNPKQ9C0E8 428 aa18.83■□□□□ 0.6
CUX1-214ENST00000550008 ADAMTS12P58397 1594 aa18.83■□□□□ 0.6
CUX1-214ENST00000550008 NOL8Q76FK4 1167 aaKnown RBP18.83■□□□□ 0.6
CUX1-214ENST00000550008 SLC52A1Q9NWF4 448 aa18.82■□□□□ 0.6
CUX1-214ENST00000550008 SMG6Q86US8 1419 aaKnown RBP18.82■□□□□ 0.6
CUX1-214ENST00000550008 TRIM6-TRIM34B2RNG4 842 aa18.81■□□□□ 0.6
CUX1-214ENST00000550008 WDR62O43379 1518 aa18.81■□□□□ 0.6
CUX1-214ENST00000550008 EIF2S2P20042 333 aaKnown RBP18.81■□□□□ 0.6
CUX1-214ENST00000550008 NAP1L2Q9ULW6 460 aaPredicted RBP18.81■□□□□ 0.6
CUX1-214ENST00000550008 DISP1Q96F81 1524 aa18.8■□□□□ 0.6
CUX1-214ENST00000550008 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.79■□□□□ 0.6
CUX1-214ENST00000550008 CFAP43Q8NDM7 1665 aa18.79■□□□□ 0.6
CUX1-214ENST00000550008 KIAA0556O60303 1618 aa18.79■□□□□ 0.6
CUX1-214ENST00000550008 FGD1P98174 961 aa18.79■□□□□ 0.6
CUX1-214ENST00000550008 NLRP6P59044 892 aa18.79■□□□□ 0.6
CUX1-214ENST00000550008 NSD3Q9BZ95 1437 aa18.78■□□□□ 0.6
CUX1-214ENST00000550008 DDX19BQ9UMR2 479 aa18.78■□□□□ 0.6
CUX1-214ENST00000550008 RRS1Q15050 365 aaKnown RBP18.78■□□□□ 0.6
CUX1-214ENST00000550008 NGEFQ8N5V2 710 aa18.78■□□□□ 0.6
CUX1-214ENST00000550008 PLCB2Q00722 1185 aa18.77■□□□□ 0.6
CUX1-214ENST00000550008 FANCAO15360 1455 aa18.77■□□□□ 0.6
CUX1-214ENST00000550008 MAGI3Q5TCQ9 1506 aa18.77■□□□□ 0.59
CUX1-214ENST00000550008 THUMPD2Q9BTF0 503 aaKnown RBP18.76■□□□□ 0.59
CUX1-214ENST00000550008 SYCP2Q9BX26 1530 aa18.76■□□□□ 0.59
CUX1-214ENST00000550008 TRAPPC8Q9Y2L5 1435 aa18.76■□□□□ 0.59
CUX1-214ENST00000550008 TCOF1Q13428 1488 aaKnown RBP18.75■□□□□ 0.59
CUX1-214ENST00000550008 C1orf115Q9H7X2 142 aa18.75■□□□□ 0.59
CUX1-214ENST00000550008 FBLN1P23142 703 aa18.75■□□□□ 0.59
CUX1-214ENST00000550008 HMMRO75330 724 aa18.75■□□□□ 0.59
CUX1-214ENST00000550008 PSME1Q06323 249 aa18.74■□□□□ 0.59
CUX1-214ENST00000550008 WWC1Q8IX03 1113 aa18.74■□□□□ 0.59
CUX1-214ENST00000550008 CHMP3Q9Y3E7 222 aa18.74■□□□□ 0.59
CUX1-214ENST00000550008 FOXD4L5Q5VV16 416 aaPredicted RBP18.73■□□□□ 0.59
CUX1-214ENST00000550008 FOXD4L4Q8WXT5 416 aaPredicted RBP18.73■□□□□ 0.59
CUX1-214ENST00000550008 TEFQ10587 303 aa18.73■□□□□ 0.59
CUX1-214ENST00000550008 EIF4G3O43432 1585 aaKnown RBP18.72■□□□□ 0.59
CUX1-214ENST00000550008 NOS1P29475 1434 aa18.72■□□□□ 0.59
CUX1-214ENST00000550008 GNAI1P63096 354 aa18.72■□□□□ 0.59
CUX1-214ENST00000550008 SLFN5Q08AF3 891 aa18.72■□□□□ 0.59
CUX1-214ENST00000550008 SULT6B1Q6IMI4 303 aa18.72■□□□□ 0.59
CUX1-214ENST00000550008 TSPYL4Q9UJ04 414 aa18.72■□□□□ 0.59
CUX1-214ENST00000550008 CCDC9Q9Y3X0 531 aaKnown RBP18.72■□□□□ 0.59
CUX1-214ENST00000550008 FKBP5Q13451 457 aaPredicted RBP18.71■□□□□ 0.59
CUX1-214ENST00000550008 RILPL2Q969X0 211 aa18.71■□□□□ 0.59
CUX1-214ENST00000550008 MCCP23508 829 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms