RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 TRPC6Q9Y210 931 aa7.8□□□□□ -1.16
LIMA1-203ENST00000547825 CLIP1P30622 1438 aa7.8□□□□□ -1.16
LIMA1-203ENST00000547825 PDE4AP27815 886 aa7.79□□□□□ -1.16
LIMA1-203ENST00000547825 CD109Q6YHK3 1445 aa7.79□□□□□ -1.16
LIMA1-203ENST00000547825 MAGI2Q86UL8 1455 aa7.79□□□□□ -1.16
LIMA1-203ENST00000547825 RNF17Q9BXT8 1623 aaKnown RBP7.79□□□□□ -1.16
LIMA1-203ENST00000547825 ZFYVE16Q7Z3T8 1539 aa7.79□□□□□ -1.16
LIMA1-203ENST00000547825 GPATCH8Q9UKJ3 1502 aaKnown RBP7.79□□□□□ -1.16
LIMA1-203ENST00000547825 AGLP35573 1532 aa7.78□□□□□ -1.16
LIMA1-203ENST00000547825 POGZQ7Z3K3 1410 aa7.78□□□□□ -1.16
LIMA1-203ENST00000547825 GPIHBP1Q8IV16 184 aa7.78□□□□□ -1.16
LIMA1-203ENST00000547825 FER1L4A9Z1Z3 1794 aa7.78□□□□□ -1.16
LIMA1-203ENST00000547825 MROH1Q8NDA8 1641 aa7.78□□□□□ -1.16
LIMA1-203ENST00000547825 EIF2AK4Q9P2K8 1649 aaKnown RBP7.78□□□□□ -1.16
LIMA1-203ENST00000547825 MBD5Q9P267 1494 aa7.78□□□□□ -1.16
LIMA1-203ENST00000547825 VPS8Q8N3P4 1428 aa7.77□□□□□ -1.16
LIMA1-203ENST00000547825 CAMK2BQ13554 666 aa7.77□□□□□ -1.17
LIMA1-203ENST00000547825 KRI1Q8N9T8 703 aaKnown RBP7.77□□□□□ -1.17
LIMA1-203ENST00000547825 PODXL2Q9NZ53 605 aa7.77□□□□□ -1.17
LIMA1-203ENST00000547825 AK7Q96M32 723 aa7.77□□□□□ -1.17
LIMA1-203ENST00000547825 ARID3AQ99856 593 aa7.77□□□□□ -1.17
LIMA1-203ENST00000547825 MLH3Q9UHC1 1453 aa7.77□□□□□ -1.17
LIMA1-203ENST00000547825 ZNF142P52746 1687 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-203ENST00000547825 TCOF1Q13428 1488 aaKnown RBP7.76□□□□□ -1.17
LIMA1-203ENST00000547825 FANCAO15360 1455 aa7.76□□□□□ -1.17
LIMA1-203ENST00000547825 C1orf115Q9H7X2 142 aa7.76□□□□□ -1.17
LIMA1-203ENST00000547825 DPYSL4O14531 572 aa7.76□□□□□ -1.17
LIMA1-203ENST00000547825 SMYD5Q6GMV2 418 aa7.76□□□□□ -1.17
LIMA1-203ENST00000547825 EMILIN3Q9NT22 766 aa7.76□□□□□ -1.17
LIMA1-203ENST00000547825 LRRC9Q6ZRR7 1453 aa7.76□□□□□ -1.17
LIMA1-203ENST00000547825 PHF12Q96QT6 1004 aa7.75□□□□□ -1.17
LIMA1-203ENST00000547825 C3P01024 1663 aa7.75□□□□□ -1.17
LIMA1-203ENST00000547825 DNMT1P26358 1616 aaKnown RBP7.75□□□□□ -1.17
LIMA1-203ENST00000547825 TRIM66O15016 1216 aa7.75□□□□□ -1.17
LIMA1-203ENST00000547825 FAM117AQ9C073 453 aa7.75□□□□□ -1.17
LIMA1-203ENST00000547825 FAM135AQ9P2D6 1515 aa7.75□□□□□ -1.17
LIMA1-203ENST00000547825 PDE4DQ08499 809 aa7.74□□□□□ -1.17
LIMA1-203ENST00000547825 POLR3GLQ9BT43 218 aa7.74□□□□□ -1.17
LIMA1-203ENST00000547825 ARIH1Q9Y4X5 557 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-203ENST00000547825 AKNAQ7Z591 1439 aa7.74□□□□□ -1.17
LIMA1-203ENST00000547825 MKRN3Q13064 507 aaKnown RBP7.74□□□□□ -1.17
LIMA1-203ENST00000547825 KIAA1107Q9UPP5 1409 aa7.74□□□□□ -1.17
LIMA1-203ENST00000547825 ZC3H13Q5T200 1668 aaKnown RBP7.74□□□□□ -1.17
LIMA1-203ENST00000547825 MADDQ8WXG6 1647 aa7.74□□□□□ -1.17
LIMA1-203ENST00000547825 KCNH8Q96L42 1107 aa7.73□□□□□ -1.17
LIMA1-203ENST00000547825 VWDEQ8N2E2 1590 aa7.73□□□□□ -1.17
LIMA1-203ENST00000547825 ARID3CA6NKF2 412 aa7.73□□□□□ -1.17
LIMA1-203ENST00000547825 ZMYND15Q9H091 742 aa7.72□□□□□ -1.17
LIMA1-203ENST00000547825 FAM69CQ0P6D2 419 aa7.72□□□□□ -1.17
LIMA1-203ENST00000547825 SYCP2Q9BX26 1530 aa7.72□□□□□ -1.17
LIMA1-203ENST00000547825 ZNF518AQ6AHZ1 1483 aa7.71□□□□□ -1.18
LIMA1-203ENST00000547825 PREX1Q8TCU6 1659 aa7.71□□□□□ -1.18
LIMA1-203ENST00000547825 GPR37O15354 613 aa7.71□□□□□ -1.18
LIMA1-203ENST00000547825 PPP1R15BQ5SWA1 713 aa7.71□□□□□ -1.18
LIMA1-203ENST00000547825 KDM5AP29375 1690 aaKnown RBP7.71□□□□□ -1.18
LIMA1-203ENST00000547825 TMEM106CQ9BVX2 250 aa7.71□□□□□ -1.18
LIMA1-203ENST00000547825 PTPN23Q9H3S7 1636 aa7.7□□□□□ -1.18
LIMA1-203ENST00000547825 RIMS1Q86UR5 1692 aaKnown RBP7.7□□□□□ -1.18
LIMA1-203ENST00000547825 ATP7AQ04656 1500 aa7.7□□□□□ -1.18
LIMA1-203ENST00000547825 ADGRL1O94910 1474 aa7.7□□□□□ -1.18
LIMA1-203ENST00000547825 NCOA2Q15596 1464 aa7.7□□□□□ -1.18
LIMA1-203ENST00000547825 DHX57Q6P158 1386 aaKnown RBP7.7□□□□□ -1.18
LIMA1-203ENST00000547825 SHANK2Q9UPX8 1470 aa7.7□□□□□ -1.18
LIMA1-203ENST00000547825 KANK4Q5T7N3 995 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-203ENST00000547825 STRCQ7RTU9 1775 aa7.7□□□□□ -1.18
LIMA1-203ENST00000547825 KDM5DQ9BY66 1539 aa7.69□□□□□ -1.18
LIMA1-203ENST00000547825 FXR2P51116 673 aaKnown RBP eCLIP7.69□□□□□ -1.18
LIMA1-203ENST00000547825 DPY19L2Q6NUT2 758 aa7.69□□□□□ -1.18
LIMA1-203ENST00000547825 DENND4BO75064 1496 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-203ENST00000547825 PAK3O75914 559 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-203ENST00000547825 DSG2Q14126 1118 aa7.69□□□□□ -1.18
LIMA1-203ENST00000547825 PLEKHG3A1L390 1219 aa7.68□□□□□ -1.18
LIMA1-203ENST00000547825 ZRANB1Q9UGI0 708 aa7.68□□□□□ -1.18
LIMA1-203ENST00000547825 RTEL1-TNFRSF6BF6WH68 1400 aa7.68□□□□□ -1.18
LIMA1-203ENST00000547825 ARHGAP5Q13017 1502 aa7.68□□□□□ -1.18
LIMA1-203ENST00000547825 CAMSAP2Q08AD1 1489 aa7.68□□□□□ -1.18
LIMA1-203ENST00000547825 GCC2Q8IWJ2 1684 aa7.68□□□□□ -1.18
LIMA1-203ENST00000547825 UNC13BO14795 1591 aa7.67□□□□□ -1.18
LIMA1-203ENST00000547825 TRAPPC8Q9Y2L5 1435 aa7.67□□□□□ -1.18
LIMA1-203ENST00000547825 PRDM15P57071 1507 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-203ENST00000547825 GPHNQ9NQX3 736 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-203ENST00000547825 YEATS2Q9ULM3 1422 aa7.67□□□□□ -1.18
LIMA1-203ENST00000547825 FECHP22830 423 aa7.67□□□□□ -1.18
LIMA1-203ENST00000547825 RTL5Q5HYW3 569 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-203ENST00000547825 TRIM52Q96A61 297 aa7.67□□□□□ -1.18
LIMA1-203ENST00000547825 CLTCQ00610 1675 aaKnown RBP7.67□□□□□ -1.18
LIMA1-203ENST00000547825 MIA2Q96PC5 1412 aa7.66□□□□□ -1.18
LIMA1-203ENST00000547825 ADGRL2O95490 1459 aa7.66□□□□□ -1.18
LIMA1-203ENST00000547825 PLEKHH2Q8IVE3 1493 aa7.66□□□□□ -1.18
LIMA1-203ENST00000547825 GOLGA2Q08379 1002 aa7.66□□□□□ -1.18
LIMA1-203ENST00000547825 RSPH6AQ9H0K4 717 aa7.66□□□□□ -1.18
LIMA1-203ENST00000547825 KDM4FA0A1W2PPD8 638 aa7.66□□□□□ -1.18
LIMA1-203ENST00000547825 ATP10AO60312 1499 aa7.65□□□□□ -1.18
LIMA1-203ENST00000547825 C9orf84Q5VXU9 1444 aa7.65□□□□□ -1.19
LIMA1-203ENST00000547825 PDIA6Q15084 440 aa7.65□□□□□ -1.19
LIMA1-203ENST00000547825 MS4A3Q96HJ5 214 aa7.65□□□□□ -1.19
LIMA1-203ENST00000547825 CDK11AQ9UQ88 783 aaPredicted RBP7.65□□□□□ -1.19
LIMA1-203ENST00000547825 SUPT16HQ9Y5B9 1047 aaKnown RBP7.65□□□□□ -1.19
LIMA1-203ENST00000547825 CEP152O94986 1710 aa7.64□□□□□ -1.19
LIMA1-203ENST00000547825 MYO3AQ8NEV4 1616 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms