RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 ZKSCAN1P17029 563 aaPredicted RBP18.82■□□□□ 0.6
CHD4-210ENST00000544040 AK7Q96M32 723 aa18.82■□□□□ 0.6
CHD4-210ENST00000544040 CUX2O14529 1486 aa18.81■□□□□ 0.6
CHD4-210ENST00000544040 CHMP5Q9NZZ3 219 aa18.81■□□□□ 0.6
CHD4-210ENST00000544040 KIF3BO15066 747 aa18.81■□□□□ 0.6
CHD4-210ENST00000544040 CCDC47Q96A33 483 aaKnown RBP18.81■□□□□ 0.6
CHD4-210ENST00000544040 NFXL1Q6ZNB6 911 aa18.8■□□□□ 0.6
CHD4-210ENST00000544040 REC8O95072 547 aa18.8■□□□□ 0.6
CHD4-210ENST00000544040 CPLX2Q6PUV4 134 aaKnown RBP18.8■□□□□ 0.6
CHD4-210ENST00000544040 E9PSI1 815 aa18.8■□□□□ 0.6
CHD4-210ENST00000544040 RUFY2Q8WXA3 655 aa18.8■□□□□ 0.6
CHD4-210ENST00000544040 SKIDA1Q1XH10 827 aa18.8■□□□□ 0.6
CHD4-210ENST00000544040 KDM4AO75164 1064 aa18.79■□□□□ 0.6
CHD4-210ENST00000544040 IFIT2P09913 472 aaKnown RBP18.79■□□□□ 0.6
CHD4-210ENST00000544040 PHLDB1Q86UU1 1377 aa18.79■□□□□ 0.6
CHD4-210ENST00000544040 HNRNPMP52272 730 aaKnown RBP eCLIP18.79■□□□□ 0.63e-7■■■■■ 27.3
CHD4-210ENST00000544040 CHMP4CQ96CF2 233 aa18.79■□□□□ 0.6
CHD4-210ENST00000544040 C9orf78Q9NZ63 289 aaPredicted RBP18.79■□□□□ 0.6
CHD4-210ENST00000544040 TTLL5Q6EMB2 1281 aa18.79■□□□□ 0.6
CHD4-210ENST00000544040 TRIM34Q9BYJ4 488 aa18.78■□□□□ 0.6
CHD4-210ENST00000544040 C1orf141Q5JVX7 400 aa18.78■□□□□ 0.6
CHD4-210ENST00000544040 ANKRD30AQ9BXX3 1397 aa18.78■□□□□ 0.6
CHD4-210ENST00000544040 NOM1Q5C9Z4 860 aaKnown RBP18.78■□□□□ 0.6
CHD4-210ENST00000544040 SMC3Q9UQE7 1217 aa18.78■□□□□ 0.6
CHD4-210ENST00000544040 ARGLU1Q9NWB6 273 aaPredicted RBP18.78■□□□□ 0.6
CHD4-210ENST00000544040 PDILTQ8N807 584 aa18.78■□□□□ 0.6
CHD4-210ENST00000544040 HOOK1Q9UJC3 728 aaKnown RBP18.78■□□□□ 0.6
CHD4-210ENST00000544040 ST20-MTHFSA0A0A6YYL1 179 aa18.77■□□□□ 0.6
CHD4-210ENST00000544040 CTDP1Q9Y5B0 961 aaPredicted RBP18.77■□□□□ 0.6
CHD4-210ENST00000544040 MAP7D2Q96T17 732 aa18.77■□□□□ 0.6
CHD4-210ENST00000544040 VPS8Q8N3P4 1428 aa18.76■□□□□ 0.59
CHD4-210ENST00000544040 AMOTL1Q8IY63 956 aa18.76■□□□□ 0.59
CHD4-210ENST00000544040 RNF214Q8ND24 703 aa18.76■□□□□ 0.59
CHD4-210ENST00000544040 SAMD1Q6SPF0 538 aaPredicted RBP18.76■□□□□ 0.59
CHD4-210ENST00000544040 NOL10Q9BSC4 688 aaKnown RBP18.75■□□□□ 0.59
CHD4-210ENST00000544040 APAF1O14727 1248 aa18.75■□□□□ 0.59
CHD4-210ENST00000544040 FANCIQ9NVI1 1328 aa18.75■□□□□ 0.59
CHD4-210ENST00000544040 HSP90B2PQ58FF3 399 aa18.74■□□□□ 0.59
CHD4-210ENST00000544040 MSH5O43196 834 aa18.74■□□□□ 0.59
CHD4-210ENST00000544040 CT47A1Q5JQC4 288 aaPredicted RBP18.74■□□□□ 0.59
CHD4-210ENST00000544040 FMN1Q68DA7 1419 aa18.74■□□□□ 0.59
CHD4-210ENST00000544040 CNKSR2Q8WXI2 1034 aa18.73■□□□□ 0.59
CHD4-210ENST00000544040 CGNL1Q0VF96 1302 aa18.73■□□□□ 0.59
CHD4-210ENST00000544040 TRDNQ13061 729 aa18.73■□□□□ 0.59
CHD4-210ENST00000544040 CAGE1Q8TC20 777 aa18.73■□□□□ 0.59
CHD4-210ENST00000544040 ACBD3Q9H3P7 528 aa18.73■□□□□ 0.59
CHD4-210ENST00000544040 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.73■□□□□ 0.599e-7■■■■■ 60.1
CHD4-210ENST00000544040 NEXNQ0ZGT2 675 aa18.72■□□□□ 0.59
CHD4-210ENST00000544040 DDX19BQ9UMR2 479 aa18.72■□□□□ 0.59
CHD4-210ENST00000544040 CDR1P51861 262 aa18.72■□□□□ 0.59
CHD4-210ENST00000544040 NFKBIBQ15653 356 aa18.72■□□□□ 0.59
CHD4-210ENST00000544040 CCDC73Q6ZRK6 1079 aa18.72■□□□□ 0.59
CHD4-210ENST00000544040 COG3Q96JB2 828 aa18.72■□□□□ 0.59
CHD4-210ENST00000544040 TEFQ10587 303 aa18.72■□□□□ 0.59
CHD4-210ENST00000544040 EID1Q9Y6B2 187 aa18.72■□□□□ 0.59
CHD4-210ENST00000544040 H0YHG0 523 aa18.71■□□□□ 0.59
CHD4-210ENST00000544040 LRRFIP1Q32MZ4 808 aaKnown RBP18.71■□□□□ 0.59
CHD4-210ENST00000544040 LNPKQ9C0E8 428 aa18.71■□□□□ 0.59
CHD4-210ENST00000544040 NASPP49321 788 aaPredicted RBP18.71■□□□□ 0.59
CHD4-210ENST00000544040 VPS37DQ86XT2 251 aa18.71■□□□□ 0.59
CHD4-210ENST00000544040 DZIP1LQ8IYY4 767 aaKnown RBP18.71■□□□□ 0.59
CHD4-210ENST00000544040 RNF20Q5VTR2 975 aa18.71■□□□□ 0.59
CHD4-210ENST00000544040 ZBED9Q6R2W3 1325 aa18.7■□□□□ 0.58
CHD4-210ENST00000544040 ERICH2A1L162 156 aa18.7■□□□□ 0.58
CHD4-210ENST00000544040 RBM10P98175 930 aaKnown RBP18.7■□□□□ 0.58
CHD4-210ENST00000544040 CCDC27Q2M243 656 aa18.7■□□□□ 0.58
CHD4-210ENST00000544040 INTS3Q68E01 1043 aaKnown RBP18.7■□□□□ 0.58
CHD4-210ENST00000544040 TTC5Q8N0Z6 440 aa18.7■□□□□ 0.58
CHD4-210ENST00000544040 CCDC39Q9UFE4 941 aa18.7■□□□□ 0.58
CHD4-210ENST00000544040 C22orf23Q9BZE7 217 aa18.7■□□□□ 0.58
CHD4-210ENST00000544040 HSP90AB2PQ58FF8 381 aa18.69■□□□□ 0.58
CHD4-210ENST00000544040 ZFYVE27Q5T4F4 411 aa18.69■□□□□ 0.58
CHD4-210ENST00000544040 WASHC2CQ9Y4E1 1318 aa18.69■□□□□ 0.58
CHD4-210ENST00000544040 NUCB2P80303 420 aa18.69■□□□□ 0.58
CHD4-210ENST00000544040 ODF2Q5BJF6 829 aa18.69■□□□□ 0.58
CHD4-210ENST00000544040 CCDC43Q96MW1 224 aaKnown RBP18.69■□□□□ 0.58
CHD4-210ENST00000544040 PLCD4Q9BRC7 762 aa18.69■□□□□ 0.58
CHD4-210ENST00000544040 FYB1O15117 783 aa18.69■□□□□ 0.58
CHD4-210ENST00000544040 PRKRIP1Q9H875 184 aaPredicted RBP18.68■□□□□ 0.58
CHD4-210ENST00000544040 MTMR7Q9Y216 660 aa18.68■□□□□ 0.58
CHD4-210ENST00000544040 G3BP1Q13283 466 aaKnown RBP eCLIP18.68■□□□□ 0.587e-7■■■□□ 15.8
CHD4-210ENST00000544040 KRI1Q8N9T8 703 aaKnown RBP18.68■□□□□ 0.58
CHD4-210ENST00000544040 EFCAB2Q5VUJ9 269 aa18.67■□□□□ 0.58
CHD4-210ENST00000544040 RIPK4P57078 832 aa18.67■□□□□ 0.58
CHD4-210ENST00000544040 EVA1CP58658 441 aa18.67■□□□□ 0.58
CHD4-210ENST00000544040 OLFM4Q6UX06 510 aa18.67■□□□□ 0.58
CHD4-210ENST00000544040 FKBP5Q13451 457 aaPredicted RBP18.67■□□□□ 0.58
CHD4-210ENST00000544040 EPS15P42566 896 aa18.66■□□□□ 0.58
CHD4-210ENST00000544040 DHX37Q8IY37 1157 aaKnown RBP18.66■□□□□ 0.58
CHD4-210ENST00000544040 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.65■□□□□ 0.58
CHD4-210ENST00000544040 SAFBQ15424 915 aaKnown RBP eCLIP18.65■□□□□ 0.58
CHD4-210ENST00000544040 CAVIN1Q6NZI2 390 aaKnown RBP18.64■□□□□ 0.58
CHD4-210ENST00000544040 CCDC191Q8NCU4 936 aa18.64■□□□□ 0.58
CHD4-210ENST00000544040 SYTL4Q96C24 671 aaPredicted RBP18.64■□□□□ 0.58
CHD4-210ENST00000544040 SMC2O95347 1197 aa18.64■□□□□ 0.57
CHD4-210ENST00000544040 BRPF3Q9ULD4 1205 aa18.64■□□□□ 0.57
CHD4-210ENST00000544040 RDXP35241 583 aaKnown RBP18.64■□□□□ 0.57
CHD4-210ENST00000544040 OFD1O75665 1012 aa18.63■□□□□ 0.57
CHD4-210ENST00000544040 MINK1Q8N4C8 1332 aaPredicted RBP18.63■□□□□ 0.57
CHD4-210ENST00000544040 MRE11P49959 708 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms