RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 E9PSI1 815 aa9.67□□□□□ -0.86
VPS13D-211ENST00000543710 GOLGA6L1Q8N7Z2 621 aa9.67□□□□□ -0.86
VPS13D-211ENST00000543710 AIDAQ96BJ3 306 aa9.67□□□□□ -0.86
VPS13D-211ENST00000543710 PKD2Q13563 968 aa9.67□□□□□ -0.86
VPS13D-211ENST00000543710 DEKP35659 375 aaKnown RBP9.67□□□□□ -0.86
VPS13D-211ENST00000543710 CC2D1BQ5T0F9 858 aaKnown RBP9.67□□□□□ -0.86
VPS13D-211ENST00000543710 MSH6P52701 1360 aa9.66□□□□□ -0.86
VPS13D-211ENST00000543710 TPM3P06753 285 aa9.66□□□□□ -0.86
VPS13D-211ENST00000543710 FGD6Q6ZV73 1430 aa9.66□□□□□ -0.86
VPS13D-211ENST00000543710 RBM19Q9Y4C8 960 aaKnown RBP9.66□□□□□ -0.86
VPS13D-211ENST00000543710 KIF21AQ7Z4S6 1674 aa9.66□□□□□ -0.86
VPS13D-211ENST00000543710 CADPS2Q86UW7 1296 aa9.66□□□□□ -0.86
VPS13D-211ENST00000543710 AMOTL1Q8IY63 956 aa9.66□□□□□ -0.86
VPS13D-211ENST00000543710 IL27Q8NEV9 243 aa9.66□□□□□ -0.86
VPS13D-211ENST00000543710 CENPJQ9HC77 1338 aaPredicted RBP9.66□□□□□ -0.86
VPS13D-211ENST00000543710 ESCO1Q5FWF5 840 aa9.66□□□□□ -0.86
VPS13D-211ENST00000543710 DAPK1P53355 1430 aa9.66□□□□□ -0.86
VPS13D-211ENST00000543710 PRDM11Q9NQV5 511 aa9.65□□□□□ -0.86
VPS13D-211ENST00000543710 DNMBPQ6XZF7 1577 aa9.65□□□□□ -0.86
VPS13D-211ENST00000543710 TULP1O00294 542 aaPredicted RBP9.65□□□□□ -0.86
VPS13D-211ENST00000543710 DRC7Q8IY82 874 aa9.65□□□□□ -0.86
VPS13D-211ENST00000543710 STRN4Q9NRL3 753 aa9.65□□□□□ -0.86
VPS13D-211ENST00000543710 CLSTN1O94985 981 aa9.65□□□□□ -0.87
VPS13D-211ENST00000543710 IRX6P78412 446 aaPredicted RBP9.65□□□□□ -0.87
VPS13D-211ENST00000543710 FGD5Q6ZNL6 1462 aa9.65□□□□□ -0.87
VPS13D-211ENST00000543710 FHOD3Q2V2M9 1422 aa9.64□□□□□ -0.87
VPS13D-211ENST00000543710 PRDM2Q13029 1718 aa9.64□□□□□ -0.87
VPS13D-211ENST00000543710 TIAM1Q13009 1591 aa9.64□□□□□ -0.87
VPS13D-211ENST00000543710 FRAT1Q92837 279 aaPredicted RBP9.64□□□□□ -0.87
VPS13D-211ENST00000543710 CCDC7Q96M83 1385 aa9.64□□□□□ -0.87
VPS13D-211ENST00000543710 SIN3AQ96ST3 1273 aa9.64□□□□□ -0.87
VPS13D-211ENST00000543710 SYNJ1O43426 1573 aa9.64□□□□□ -0.87
VPS13D-211ENST00000543710 BRD4O60885 1362 aaPredicted RBP9.64□□□□□ -0.87
VPS13D-211ENST00000543710 HFM1A2PYH4 1435 aa9.64□□□□□ -0.87
VPS13D-211ENST00000543710 STK31Q9BXU1 1019 aa9.63□□□□□ -0.87
VPS13D-211ENST00000543710 ADAMTS2O95450 1211 aa9.63□□□□□ -0.87
VPS13D-211ENST00000543710 GNL2Q13823 731 aaKnown RBP9.63□□□□□ -0.87
VPS13D-211ENST00000543710 FAM161AQ3B820 660 aa9.63□□□□□ -0.87
VPS13D-211ENST00000543710 SYNJ2O15056 1496 aa9.63□□□□□ -0.87
VPS13D-211ENST00000543710 NUTM2FA1L443 756 aa9.63□□□□□ -0.87
VPS13D-211ENST00000543710 FBXW7Q969H0 707 aa9.63□□□□□ -0.87
VPS13D-211ENST00000543710 STK32BQ9NY57 414 aa9.63□□□□□ -0.87
VPS13D-211ENST00000543710 LETM1O95202 739 aaPredicted RBP9.63□□□□□ -0.87
VPS13D-211ENST00000543710 ADRA2BP18089 450 aa9.63□□□□□ -0.87
VPS13D-211ENST00000543710 SETQ01105 290 aaPredicted RBP9.63□□□□□ -0.87
VPS13D-211ENST00000543710 MTERF4Q7Z6M4 381 aaKnown RBP9.63□□□□□ -0.87
VPS13D-211ENST00000543710 NLRP2Q9NX02 1062 aa9.62□□□□□ -0.87
VPS13D-211ENST00000543710 U2SURPO15042 1029 aaKnown RBP9.62□□□□□ -0.87
VPS13D-211ENST00000543710 GORABQ5T7V8 394 aa9.62□□□□□ -0.87
VPS13D-211ENST00000543710 LAS1LQ9Y4W2 734 aaKnown RBP9.62□□□□□ -0.87
VPS13D-211ENST00000543710 TPM2P07951 284 aa9.62□□□□□ -0.87
VPS13D-211ENST00000543710 BIVM-ERCC5R4GMW8 1640 aa9.61□□□□□ -0.87
VPS13D-211ENST00000543710 GPR162Q16538 588 aa9.61□□□□□ -0.87
VPS13D-211ENST00000543710 LTV1Q96GA3 475 aaPredicted RBP9.61□□□□□ -0.87
VPS13D-211ENST00000543710 GPS2Q13227 327 aa9.61□□□□□ -0.87
VPS13D-211ENST00000543710 EVC2Q86UK5 1308 aa9.61□□□□□ -0.87
VPS13D-211ENST00000543710 RGS3P49796 1198 aa9.61□□□□□ -0.87
VPS13D-211ENST00000543710 PLB1Q6P1J6 1458 aa9.61□□□□□ -0.87
VPS13D-211ENST00000543710 SMC4Q9NTJ3 1288 aa9.61□□□□□ -0.87
VPS13D-211ENST00000543710 KIF7Q2M1P5 1343 aa9.6□□□□□ -0.87
VPS13D-211ENST00000543710 TOM1L2Q6ZVM7 507 aa9.6□□□□□ -0.87
VPS13D-211ENST00000543710 CLEC11AQ9Y240 323 aa9.6□□□□□ -0.87
VPS13D-211ENST00000543710 CCDC70Q6NSX1 233 aa9.6□□□□□ -0.87
VPS13D-211ENST00000543710 ITPRIPQ8IWB1 547 aa9.6□□□□□ -0.87
VPS13D-211ENST00000543710 CD109Q6YHK3 1445 aa9.59□□□□□ -0.87
VPS13D-211ENST00000543710 CCDC141Q6ZP82 1450 aa9.59□□□□□ -0.87
VPS13D-211ENST00000543710 HOOK1Q9UJC3 728 aaKnown RBP9.59□□□□□ -0.87
VPS13D-211ENST00000543710 USP47Q96K76 1375 aa9.59□□□□□ -0.87
VPS13D-211ENST00000543710 RUFY2Q8WXA3 655 aa9.59□□□□□ -0.87
VPS13D-211ENST00000543710 CT47B1P0C2W7 299 aaPredicted RBP9.58□□□□□ -0.88
VPS13D-211ENST00000543710 ARHGEF6Q15052 776 aa9.58□□□□□ -0.88
VPS13D-211ENST00000543710 PDIA4P13667 645 aaKnown RBP9.58□□□□□ -0.88
VPS13D-211ENST00000543710 NCBP3Q53F19 620 aaKnown RBP9.58□□□□□ -0.88
VPS13D-211ENST00000543710 NCOA2Q15596 1464 aa9.58□□□□□ -0.88
VPS13D-211ENST00000543710 PEG3Q9GZU2 1588 aa9.58□□□□□ -0.88
VPS13D-211ENST00000543710 TCEAL9Q9UHQ7 104 aa9.58□□□□□ -0.88
VPS13D-211ENST00000543710 CFTRP13569 1480 aa9.58□□□□□ -0.88
VPS13D-211ENST00000543710 LAMC3Q9Y6N6 1575 aa9.58□□□□□ -0.88
VPS13D-211ENST00000543710 RRP1P56182 461 aaKnown RBP9.58□□□□□ -0.88
VPS13D-211ENST00000543710 COG3Q96JB2 828 aa9.58□□□□□ -0.88
VPS13D-211ENST00000543710 DDX19BQ9UMR2 479 aa9.57□□□□□ -0.88
VPS13D-211ENST00000543710 TEFQ10587 303 aa9.57□□□□□ -0.88
VPS13D-211ENST00000543710 ITSN2Q9NZM3 1697 aa9.57□□□□□ -0.88
VPS13D-211ENST00000543710 CCP110O43303 1012 aa9.57□□□□□ -0.88
VPS13D-211ENST00000543710 MAP7D2Q96T17 732 aa9.57□□□□□ -0.88
VPS13D-211ENST00000543710 TTLL12Q14166 644 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-211ENST00000543710 HSP90AB4PQ58FF6 505 aa9.56□□□□□ -0.88
VPS13D-211ENST00000543710 B4GALNT3Q6L9W6 998 aa9.56□□□□□ -0.88
VPS13D-211ENST00000543710 C8orf37Q96NL8 207 aa9.56□□□□□ -0.88
VPS13D-211ENST00000543710 RXRBP28702 533 aa9.56□□□□□ -0.88
VPS13D-211ENST00000543710 TPM1P09493 284 aa9.56□□□□□ -0.88
VPS13D-211ENST00000543710 ZKSCAN2Q63HK3 967 aa9.56□□□□□ -0.88
VPS13D-211ENST00000543710 API5Q9BZZ5 524 aaKnown RBP9.56□□□□□ -0.88
VPS13D-211ENST00000543710 KIF14Q15058 1648 aa9.55□□□□□ -0.88
VPS13D-211ENST00000543710 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.55□□□□□ -0.88
VPS13D-211ENST00000543710 REC8O95072 547 aa9.55□□□□□ -0.88
VPS13D-211ENST00000543710 VPS37DQ86XT2 251 aa9.55□□□□□ -0.88
VPS13D-211ENST00000543710 UHRF1BP1Q6BDS2 1440 aa9.55□□□□□ -0.88
VPS13D-211ENST00000543710 KANK4Q5T7N3 995 aaPredicted RBP9.55□□□□□ -0.88
VPS13D-211ENST00000543710 LRRC59Q96AG4 307 aaKnown RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms