RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 ABCA10Q8WWZ4 1543 aa17.6■□□□□ 0.41
USP3-204ENST00000540797 MFAP1P55081 439 aaKnown RBP17.6■□□□□ 0.41
USP3-204ENST00000540797 SLC52A1Q9NWF4 448 aa17.6■□□□□ 0.41
USP3-204ENST00000540797 POGZQ7Z3K3 1410 aa17.59■□□□□ 0.41
USP3-204ENST00000540797 HFM1A2PYH4 1435 aa17.59■□□□□ 0.41
USP3-204ENST00000540797 KIF7Q2M1P5 1343 aa17.59■□□□□ 0.41
USP3-204ENST00000540797 NECTIN2Q92692 538 aa17.59■□□□□ 0.41
USP3-204ENST00000540797 PRAM1Q96QH2 718 aa17.58■□□□□ 0.41
USP3-204ENST00000540797 HMOX1P09601 288 aa17.58■□□□□ 0.41
USP3-204ENST00000540797 DNTTIP2Q5QJE6 756 aaKnown RBP17.58■□□□□ 0.41
USP3-204ENST00000540797 ABTB2Q8N961 1025 aa17.58■□□□□ 0.4
USP3-204ENST00000540797 RUNDC1Q96C34 613 aa17.57■□□□□ 0.4
USP3-204ENST00000540797 C9orf78Q9NZ63 289 aaPredicted RBP17.57■□□□□ 0.4
USP3-204ENST00000540797 CCDC7Q96M83 1385 aa17.57■□□□□ 0.4
USP3-204ENST00000540797 CLSTN1O94985 981 aa17.57■□□□□ 0.4
USP3-204ENST00000540797 HSP90B1P14625 803 aaKnown RBP17.56■□□□□ 0.4
USP3-204ENST00000540797 TOMM22Q9NS69 142 aa17.56■□□□□ 0.4
USP3-204ENST00000540797 ANKLE2Q86XL3 938 aa17.56■□□□□ 0.4
USP3-204ENST00000540797 DDX58O95786 925 aaKnown RBP17.55■□□□□ 0.4
USP3-204ENST00000540797 NRDCO43847 1150 aa17.55■□□□□ 0.4
USP3-204ENST00000540797 TSPYL4Q9UJ04 414 aa17.54■□□□□ 0.4
USP3-204ENST00000540797 IQGAP2Q13576 1575 aa17.53■□□□□ 0.4
USP3-204ENST00000540797 PLIN1O60240 522 aa17.53■□□□□ 0.4
USP3-204ENST00000540797 KIAA1107Q9UPP5 1409 aa17.52■□□□□ 0.4
USP3-204ENST00000540797 GNAI1P63096 354 aa17.52■□□□□ 0.4
USP3-204ENST00000540797 ANKRD45Q5TZF3 282 aa17.52■□□□□ 0.39
USP3-204ENST00000540797 API5Q9BZZ5 524 aaKnown RBP17.52■□□□□ 0.39
USP3-204ENST00000540797 FKBP5Q13451 457 aaPredicted RBP17.51■□□□□ 0.39
USP3-204ENST00000540797 CDK13Q14004 1512 aaKnown RBP17.51■□□□□ 0.39
USP3-204ENST00000540797 ZBED9Q6R2W3 1325 aa17.51■□□□□ 0.39
USP3-204ENST00000540797 NBPF1Q3BBV0 1214 aa17.51■□□□□ 0.39
USP3-204ENST00000540797 SLC26A8Q96RN1 970 aa17.51■□□□□ 0.39
USP3-204ENST00000540797 COG6Q9Y2V7 657 aa17.51■□□□□ 0.39
USP3-204ENST00000540797 CD109Q6YHK3 1445 aa17.51■□□□□ 0.39
USP3-204ENST00000540797 EPRSP07814 1512 aaKnown RBP17.51■□□□□ 0.39
USP3-204ENST00000540797 HTATSF1O43719 755 aaKnown RBP17.51■□□□□ 0.39
USP3-204ENST00000540797 RILPL2Q969X0 211 aa17.5■□□□□ 0.39
USP3-204ENST00000540797 USP35Q9P2H5 1018 aa17.5■□□□□ 0.39
USP3-204ENST00000540797 DAPK1P53355 1430 aa17.5■□□□□ 0.39
USP3-204ENST00000540797 MAGI1Q96QZ7 1491 aaPredicted RBP17.5■□□□□ 0.39
USP3-204ENST00000540797 MTHFSP49914 203 aa17.49■□□□□ 0.39
USP3-204ENST00000540797 CDK19Q9BWU1 502 aa17.49■□□□□ 0.39
USP3-204ENST00000540797 GRIN2AQ12879 1464 aa17.48■□□□□ 0.39
USP3-204ENST00000540797 GBP4Q96PP9 640 aa17.48■□□□□ 0.39
USP3-204ENST00000540797 TIAM1Q13009 1591 aa17.48■□□□□ 0.39
USP3-204ENST00000540797 NOL8Q76FK4 1167 aaKnown RBP17.48■□□□□ 0.39
USP3-204ENST00000540797 RRP1P56182 461 aaKnown RBP17.48■□□□□ 0.39
USP3-204ENST00000540797 SLKQ9H2G2 1235 aaPredicted RBP17.48■□□□□ 0.39
USP3-204ENST00000540797 DDX19BQ9UMR2 479 aa17.47■□□□□ 0.39
USP3-204ENST00000540797 RPGRIP1LQ68CZ1 1315 aa17.47■□□□□ 0.39
USP3-204ENST00000540797 ARHGEF11O15085 1522 aa17.46■□□□□ 0.39
USP3-204ENST00000540797 PHF23Q9BUL5 403 aaPredicted RBP17.46■□□□□ 0.39
USP3-204ENST00000540797 RBM19Q9Y4C8 960 aaKnown RBP17.46■□□□□ 0.39
USP3-204ENST00000540797 ERBINQ96RT1 1412 aa17.46■□□□□ 0.39
USP3-204ENST00000540797 CENPQQ7L2Z9 268 aaPredicted RBP17.46■□□□□ 0.39
USP3-204ENST00000540797 DZIP1LQ8IYY4 767 aaKnown RBP17.46■□□□□ 0.39
USP3-204ENST00000540797 STRN4Q9NRL3 753 aa17.46■□□□□ 0.39
USP3-204ENST00000540797 SUPT6HQ7KZ85 1726 aaKnown RBP17.46■□□□□ 0.38
USP3-204ENST00000540797 CRBNQ96SW2 442 aa17.45■□□□□ 0.38
USP3-204ENST00000540797 ZNF692Q9BU19 519 aaPredicted RBP17.45■□□□□ 0.38
USP3-204ENST00000540797 CNTLNQ9NXG0 1405 aa17.45■□□□□ 0.38
USP3-204ENST00000540797 CABP1Q9NZU7 370 aa17.45■□□□□ 0.38
USP3-204ENST00000540797 PLB1Q6P1J6 1458 aa17.44■□□□□ 0.38
USP3-204ENST00000540797 LRRFIP1Q32MZ4 808 aaKnown RBP17.44■□□□□ 0.38
USP3-204ENST00000540797 PLEKHO1Q53GL0 409 aaPredicted RBP17.44■□□□□ 0.38
USP3-204ENST00000540797 RIC3Q7Z5B4 369 aa17.44■□□□□ 0.38
USP3-204ENST00000540797 DRC7Q8IY82 874 aa17.44■□□□□ 0.38
USP3-204ENST00000540797 EXOC6Q8TAG9 804 aa17.44■□□□□ 0.38
USP3-204ENST00000540797 NOL10Q9BSC4 688 aaKnown RBP17.44■□□□□ 0.38
USP3-204ENST00000540797 SLC12A5Q9H2X9 1139 aa17.44■□□□□ 0.38
USP3-204ENST00000540797 AIMP1Q12904 312 aaKnown RBP17.43■□□□□ 0.38
USP3-204ENST00000540797 ROCK1Q13464 1354 aa17.43■□□□□ 0.38
USP3-204ENST00000540797 GAS2L2Q8NHY3 880 aa17.43■□□□□ 0.38
USP3-204ENST00000540797 CUL7Q14999 1698 aa17.43■□□□□ 0.38
USP3-204ENST00000540797 VPS37DQ86XT2 251 aa17.43■□□□□ 0.38
USP3-204ENST00000540797 IFIT2P09913 472 aaKnown RBP17.42■□□□□ 0.38
USP3-204ENST00000540797 ST18O60284 1047 aa17.42■□□□□ 0.38
USP3-204ENST00000540797 G3BP1Q13283 466 aaKnown RBP eCLIP17.42■□□□□ 0.38
USP3-204ENST00000540797 URB2Q14146 1524 aaKnown RBP17.42■□□□□ 0.38
USP3-204ENST00000540797 RTEL1-TNFRSF6BF6WH68 1400 aa17.42■□□□□ 0.38
USP3-204ENST00000540797 PTMSP20962 102 aa17.42■□□□□ 0.38
USP3-204ENST00000540797 DIAPH3Q9NSV4 1193 aa17.42■□□□□ 0.38
USP3-204ENST00000540797 KIF16BQ96L93 1317 aa17.41■□□□□ 0.38
USP3-204ENST00000540797 ANKRD30BQ9BXX2 1392 aa17.41■□□□□ 0.38
USP3-204ENST00000540797 SMG6Q86US8 1419 aaKnown RBP17.41■□□□□ 0.38
USP3-204ENST00000540797 CCDC141Q6ZP82 1450 aa17.41■□□□□ 0.38
USP3-204ENST00000540797 NUTM2BA6NNL0 878 aaPredicted RBP17.41■□□□□ 0.38
USP3-204ENST00000540797 NUTM2EB1AL46 878 aaPredicted RBP17.41■□□□□ 0.38
USP3-204ENST00000540797 NUTM2AQ8IVF1 878 aaPredicted RBP17.41■□□□□ 0.38
USP3-204ENST00000540797 WASHC2AQ641Q2 1341 aa17.41■□□□□ 0.38
USP3-204ENST00000540797 KLHL34Q8N239 644 aa17.4■□□□□ 0.38
USP3-204ENST00000540797 CCDC34Q96HJ3 373 aa17.4■□□□□ 0.38
USP3-204ENST00000540797 KIF3AQ9Y496 699 aa17.4■□□□□ 0.38
USP3-204ENST00000540797 RASSF8Q8NHQ8 419 aa17.4■□□□□ 0.38
USP3-204ENST00000540797 TATP17735 454 aaPredicted RBP17.39■□□□□ 0.37
USP3-204ENST00000540797 ADAMTS8Q9UP79 889 aa17.39■□□□□ 0.37
USP3-204ENST00000540797 PRKAR2BP31323 418 aa17.39■□□□□ 0.37
USP3-204ENST00000540797 PPP2R1AP30153 589 aa17.39■□□□□ 0.37
USP3-204ENST00000540797 AMOTL1Q8IY63 956 aa17.39■□□□□ 0.37
USP3-204ENST00000540797 FOXD4L1Q9NU39 408 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms