RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 STAG3Q9UJ98 1225 aa17.42■□□□□ 0.38
CLSTN3-206ENST00000535668 TMEM131LA2VDJ0 1609 aa17.4■□□□□ 0.38
CLSTN3-206ENST00000535668 TBX22Q9Y458 520 aa17.4■□□□□ 0.38
CLSTN3-206ENST00000535668 PIK3R4Q99570 1358 aa17.4■□□□□ 0.38
CLSTN3-206ENST00000535668 GCC2Q8IWJ2 1684 aa17.39■□□□□ 0.37
CLSTN3-206ENST00000535668 CHD2O14647 1828 aaKnown RBP17.37■□□□□ 0.37
CLSTN3-206ENST00000535668 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLSTN3-206ENST00000535668 SLC26A8Q96RN1 970 aa17.36■□□□□ 0.37
CLSTN3-206ENST00000535668 IQGAP3Q86VI3 1631 aa17.36■□□□□ 0.37
CLSTN3-206ENST00000535668 FAM50AQ14320 339 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-206ENST00000535668 PROSER2Q86WR7 435 aaPredicted RBP17.35■□□□□ 0.37
CLSTN3-206ENST00000535668 RGS17Q9UGC6 210 aaPredicted RBP17.35■□□□□ 0.37
CLSTN3-206ENST00000535668 RIMS2Q9UQ26 1411 aa17.35■□□□□ 0.37
CLSTN3-206ENST00000535668 DIP2AQ14689 1571 aa17.34■□□□□ 0.37
CLSTN3-206ENST00000535668 ADAMTS13Q76LX8 1427 aa17.33■□□□□ 0.36
CLSTN3-206ENST00000535668 E9PCH4 1651 aa17.32■□□□□ 0.36
CLSTN3-206ENST00000535668 MSH6P52701 1360 aa17.31■□□□□ 0.36
CLSTN3-206ENST00000535668 PHF23Q9BUL5 403 aaPredicted RBP17.31■□□□□ 0.36
CLSTN3-206ENST00000535668 SLAIN2Q9P270 581 aa17.31■□□□□ 0.36
CLSTN3-206ENST00000535668 ROBO1Q9Y6N7 1651 aa17.31■□□□□ 0.36
CLSTN3-206ENST00000535668 MYO5BQ9ULV0 1848 aa17.29■□□□□ 0.36
CLSTN3-206ENST00000535668 C19orf44Q9H6X5 657 aa17.26■□□□□ 0.35
CLSTN3-206ENST00000535668 NUP155O75694 1391 aa17.26■□□□□ 0.35
CLSTN3-206ENST00000535668 DCCP43146 1447 aa17.25■□□□□ 0.35
CLSTN3-206ENST00000535668 JCADQ9P266 1359 aa17.25■□□□□ 0.35
CLSTN3-206ENST00000535668 CADPS2Q86UW7 1296 aa17.24■□□□□ 0.35
CLSTN3-206ENST00000535668 SETBP1Q9Y6X0 1596 aa17.23■□□□□ 0.35
CLSTN3-206ENST00000535668 PPP1R15AO75807 674 aaPredicted RBP17.23■□□□□ 0.35
CLSTN3-206ENST00000535668 TRPM2O94759 1503 aa17.21■□□□□ 0.35
CLSTN3-206ENST00000535668 COL16A1Q07092 1604 aaPredicted RBP17.21■□□□□ 0.35
CLSTN3-206ENST00000535668 AHDC1Q5TGY3 1603 aaPredicted RBP17.21■□□□□ 0.35
CLSTN3-206ENST00000535668 RRBP1Q9P2E9 1410 aaKnown RBP17.2■□□□□ 0.34
CLSTN3-206ENST00000535668 SPATA31A6Q5VVP1 1343 aa17.2■□□□□ 0.34
CLSTN3-206ENST00000535668 NRXN3Q9Y4C0 1643 aa17.19■□□□□ 0.34
CLSTN3-206ENST00000535668 RBM33Q96EV2 1170 aaKnown RBP17.19■□□□□ 0.34
CLSTN3-206ENST00000535668 PRAG1Q86YV5 1406 aa17.19■□□□□ 0.34
CLSTN3-206ENST00000535668 PTPRUQ92729 1446 aa17.19■□□□□ 0.34
CLSTN3-206ENST00000535668 POTEAQ6S8J7 498 aa17.18■□□□□ 0.34
CLSTN3-206ENST00000535668 BCANQ96GW7 911 aa17.18■□□□□ 0.34
CLSTN3-206ENST00000535668 XRN1Q8IZH2 1706 aaKnown RBP17.18■□□□□ 0.34
CLSTN3-206ENST00000535668 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.18■□□□□ 0.34
CLSTN3-206ENST00000535668 PHLPP1O60346 1717 aa17.17■□□□□ 0.34
CLSTN3-206ENST00000535668 AMOTL2Q9Y2J4 779 aa17.17■□□□□ 0.34
CLSTN3-206ENST00000535668 SPHKAPQ2M3C7 1700 aa17.16■□□□□ 0.34
CLSTN3-206ENST00000535668 NAIPQ13075 1403 aa17.13■□□□□ 0.33
CLSTN3-206ENST00000535668 ATF3P18847 181 aa17.13■□□□□ 0.33
CLSTN3-206ENST00000535668 SHPRHQ149N8 1683 aa17.13■□□□□ 0.33
CLSTN3-206ENST00000535668 SETD5Q9C0A6 1442 aa17.13■□□□□ 0.33
CLSTN3-206ENST00000535668 CHGAP10645 457 aaKnown RBP17.12■□□□□ 0.33
CLSTN3-206ENST00000535668 NEXMIFQ5QGS0 1516 aa17.11■□□□□ 0.33
CLSTN3-206ENST00000535668 BRINP3Q76B58 766 aa17.11■□□□□ 0.33
CLSTN3-206ENST00000535668 SENP3Q9H4L4 574 aaPredicted RBP17.1■□□□□ 0.33
CLSTN3-206ENST00000535668 METP08581 1390 aa17.1■□□□□ 0.33
CLSTN3-206ENST00000535668 HFM1A2PYH4 1435 aa17.1■□□□□ 0.33
CLSTN3-206ENST00000535668 MST1RQ04912 1400 aa17.1■□□□□ 0.33
CLSTN3-206ENST00000535668 RPGRIP1LQ68CZ1 1315 aa17.09■□□□□ 0.33
CLSTN3-206ENST00000535668 ADGRL3Q9HAR2 1447 aa17.09■□□□□ 0.33
CLSTN3-206ENST00000535668 LRP6O75581 1613 aa17.09■□□□□ 0.33
CLSTN3-206ENST00000535668 LAMC1P11047 1609 aa17.08■□□□□ 0.32
CLSTN3-206ENST00000535668 PTCH1Q13635 1447 aa17.08■□□□□ 0.32
CLSTN3-206ENST00000535668 CLTCL1P53675 1640 aa17.07■□□□□ 0.32
CLSTN3-206ENST00000535668 NUTM2DQ5VT03 806 aaPredicted RBP17.07■□□□□ 0.32
CLSTN3-206ENST00000535668 ZNF772Q68DY9 489 aaPredicted RBP17.07■□□□□ 0.32
CLSTN3-206ENST00000535668 ASXL1Q8IXJ9 1541 aa17.06■□□□□ 0.32
CLSTN3-206ENST00000535668 CDK12Q9NYV4 1490 aaPredicted RBP17.06■□□□□ 0.32
CLSTN3-206ENST00000535668 C14orf37Q86TY3 774 aa17.06■□□□□ 0.32
CLSTN3-206ENST00000535668 NHSL1Q5SYE7 1610 aa17.06■□□□□ 0.32
CLSTN3-206ENST00000535668 VGFO15240 615 aaPredicted RBP17.05■□□□□ 0.32
CLSTN3-206ENST00000535668 LRRC59Q96AG4 307 aaKnown RBP17.03■□□□□ 0.32
CLSTN3-206ENST00000535668 SETD1AO15047 1707 aaKnown RBP17.03■□□□□ 0.32
CLSTN3-206ENST00000535668 KIF1BO60333 1816 aa17.02■□□□□ 0.31
CLSTN3-206ENST00000535668 ITGAEP38570 1179 aa17.01■□□□□ 0.31
CLSTN3-206ENST00000535668 ZNF326Q5BKZ1 582 aaKnown RBP17■□□□□ 0.31
CLSTN3-206ENST00000535668 C1orf167Q5SNV9 1468 aa16.99■□□□□ 0.31
CLSTN3-206ENST00000535668 NALCNQ8IZF0 1738 aa16.98■□□□□ 0.31
CLSTN3-206ENST00000535668 SOS2Q07890 1332 aaPredicted RBP16.97■□□□□ 0.31
CLSTN3-206ENST00000535668 ACIN1Q9UKV3 1341 aaKnown RBP16.97■□□□□ 0.31
CLSTN3-206ENST00000535668 PNPLA6Q8IY17 1366 aa16.97■□□□□ 0.31
CLSTN3-206ENST00000535668 ROBO2Q9HCK4 1378 aa16.97■□□□□ 0.31
CLSTN3-206ENST00000535668 TECPR2O15040 1411 aa16.96■□□□□ 0.31
CLSTN3-206ENST00000535668 RXRBP28702 533 aa16.94■□□□□ 0.3
CLSTN3-206ENST00000535668 PPLO60437 1756 aa16.94■□□□□ 0.3
CLSTN3-206ENST00000535668 SPATA31E1Q6ZUB1 1445 aa16.94■□□□□ 0.3
CLSTN3-206ENST00000535668 UPF1Q92900 1129 aaKnown RBP eCLIP16.93■□□□□ 0.3
CLSTN3-206ENST00000535668 SLC4A1APQ9BWU0 796 aaKnown RBP16.93■□□□□ 0.3
CLSTN3-206ENST00000535668 MEX3CQ5U5Q3 659 aaKnown RBP16.92■□□□□ 0.3
CLSTN3-206ENST00000535668 ANKRD30BQ9BXX2 1392 aa16.91■□□□□ 0.3
CLSTN3-206ENST00000535668 ABCC11Q96J66 1382 aa16.9■□□□□ 0.3
CLSTN3-206ENST00000535668 CDC42BPGQ6DT37 1551 aa16.9■□□□□ 0.3
CLSTN3-206ENST00000535668 PPARGC1BQ86YN6 1023 aaKnown RBP16.9■□□□□ 0.3
CLSTN3-206ENST00000535668 SIRT1Q96EB6 747 aa16.9■□□□□ 0.3
CLSTN3-206ENST00000535668 AFF2P51816 1311 aa16.9■□□□□ 0.3
CLSTN3-206ENST00000535668 COL22A1Q8NFW1 1626 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-206ENST00000535668 FNBP4Q8N3X1 1017 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-206ENST00000535668 RBM6P78332 1123 aaKnown RBP16.88■□□□□ 0.29
CLSTN3-206ENST00000535668 LRPPRCP42704 1394 aaKnown RBP16.87■□□□□ 0.29
CLSTN3-206ENST00000535668 TRIM52Q96A61 297 aa16.86■□□□□ 0.29
CLSTN3-206ENST00000535668 ORAI2Q96SN7 254 aa16.86■□□□□ 0.29
CLSTN3-206ENST00000535668 CCDC144AA2RUR9 1427 aa16.86■□□□□ 0.29
CLSTN3-206ENST00000535668 PIK3C2GO75747 1445 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms