RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 UHRF1BP1Q6BDS2 1440 aa17.84■□□□□ 0.45
PCF11-204ENST00000530660 LAMC3Q9Y6N6 1575 aa17.84■□□□□ 0.45
PCF11-204ENST00000530660 ZNF692Q9BU19 519 aaPredicted RBP17.83■□□□□ 0.44
PCF11-204ENST00000530660 EIF3AQ14152 1382 aaKnown RBP17.83■□□□□ 0.44
PCF11-204ENST00000530660 E9PCH4 1651 aa17.82■□□□□ 0.44
PCF11-204ENST00000530660 TNPO1Q92973 898 aaKnown RBP17.82■□□□□ 0.44
PCF11-204ENST00000530660 VGLL3A8MV65 326 aa17.82■□□□□ 0.44
PCF11-204ENST00000530660 PER1O15534 1290 aaPredicted RBP17.81■□□□□ 0.44
PCF11-204ENST00000530660 GOLGA2Q08379 1002 aa17.81■□□□□ 0.44
PCF11-204ENST00000530660 ANP32BQ92688 251 aaKnown RBP17.81■□□□□ 0.44
PCF11-204ENST00000530660 CCDC94Q9BW85 323 aaPredicted RBP17.81■□□□□ 0.44
PCF11-204ENST00000530660 WDR62O43379 1518 aa17.81■□□□□ 0.44
PCF11-204ENST00000530660 MTERF4Q7Z6M4 381 aaKnown RBP17.8■□□□□ 0.44
PCF11-204ENST00000530660 DYNC1I1O14576 645 aa17.8■□□□□ 0.44
PCF11-204ENST00000530660 JARID2Q92833 1246 aaPredicted RBP17.8■□□□□ 0.44
PCF11-204ENST00000530660 ZNF777Q9ULD5 760 aaPredicted RBP17.8■□□□□ 0.44
PCF11-204ENST00000530660 MFAP1P55081 439 aaKnown RBP17.79■□□□□ 0.44
PCF11-204ENST00000530660 TMEM51Q9NW97 253 aa17.79■□□□□ 0.44
PCF11-204ENST00000530660 COG6Q9Y2V7 657 aa17.79■□□□□ 0.44
PCF11-204ENST00000530660 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.79■□□□□ 0.44
PCF11-204ENST00000530660 PANK1Q8TE04 598 aa17.78■□□□□ 0.44
PCF11-204ENST00000530660 ZBTB7CA1YPR0 619 aa17.78■□□□□ 0.44
PCF11-204ENST00000530660 C22orf23Q9BZE7 217 aa17.78■□□□□ 0.44
PCF11-204ENST00000530660 SPINK5Q9NQ38 1064 aaPredicted RBP17.78■□□□□ 0.44
PCF11-204ENST00000530660 URB2Q14146 1524 aaKnown RBP17.78■□□□□ 0.44
PCF11-204ENST00000530660 CBX1P83916 185 aa17.78■□□□□ 0.44
PCF11-204ENST00000530660 CLUAP1Q96AJ1 413 aa17.78■□□□□ 0.44
PCF11-204ENST00000530660 PLEKHH2Q8IVE3 1493 aa17.77■□□□□ 0.44
PCF11-204ENST00000530660 PLCD3Q8N3E9 789 aa17.77■□□□□ 0.44
PCF11-204ENST00000530660 KIAA0586Q9BVV6 1533 aa17.76■□□□□ 0.43
PCF11-204ENST00000530660 TNNT2P45379 298 aaPredicted RBP17.76■□□□□ 0.43
PCF11-204ENST00000530660 TSC1Q92574 1164 aa17.76■□□□□ 0.43
PCF11-204ENST00000530660 NCLP19338 710 aaKnown RBP17.75■□□□□ 0.43
PCF11-204ENST00000530660 HSCBQ8IWL3 235 aa17.75■□□□□ 0.43
PCF11-204ENST00000530660 CFDP1Q9UEE9 299 aaPredicted RBP17.75■□□□□ 0.43
PCF11-204ENST00000530660 PANK3Q9H999 370 aa17.75■□□□□ 0.43
PCF11-204ENST00000530660 NOL7Q9UMY1 257 aaKnown RBP17.75■□□□□ 0.43
PCF11-204ENST00000530660 ZNF500O60304 480 aaPredicted RBP17.75■□□□□ 0.43
PCF11-204ENST00000530660 SLFN5Q08AF3 891 aa17.75■□□□□ 0.43
PCF11-204ENST00000530660 NUP155O75694 1391 aa17.74■□□□□ 0.43
PCF11-204ENST00000530660 FOXD4L1Q9NU39 408 aa17.74■□□□□ 0.43
PCF11-204ENST00000530660 PDZRN3Q9UPQ7 1066 aa17.74■□□□□ 0.43
PCF11-204ENST00000530660 AMER1Q5JTC6 1135 aaPredicted RBP17.74■□□□□ 0.43
PCF11-204ENST00000530660 ZNF521Q96K83 1311 aa17.73■□□□□ 0.43
PCF11-204ENST00000530660 CAMSAP2Q08AD1 1489 aa17.73■□□□□ 0.43
PCF11-204ENST00000530660 ZNF830Q96NB3 372 aaPredicted RBP17.73■□□□□ 0.43
PCF11-204ENST00000530660 GBP4Q96PP9 640 aa17.73■□□□□ 0.43
PCF11-204ENST00000530660 ZBTB22O15209 634 aa17.72■□□□□ 0.43
PCF11-204ENST00000530660 DDIT3P35638 169 aa17.72■□□□□ 0.43
PCF11-204ENST00000530660 IPO4Q8TEX9 1081 aaKnown RBP17.72■□□□□ 0.43
PCF11-204ENST00000530660 RTEL1-TNFRSF6BF6WH68 1400 aa17.72■□□□□ 0.43
PCF11-204ENST00000530660 SKOR2Q2VWA4 1001 aaPredicted RBP17.72■□□□□ 0.43
PCF11-204ENST00000530660 IQGAP2Q13576 1575 aa17.72■□□□□ 0.43
PCF11-204ENST00000530660 NBPF1Q3BBV0 1214 aa17.71■□□□□ 0.43
PCF11-204ENST00000530660 IGSF3O75054 1194 aa17.71■□□□□ 0.43
PCF11-204ENST00000530660 CGNL1Q0VF96 1302 aa17.71■□□□□ 0.43
PCF11-204ENST00000530660 ARHGEF12Q9NZN5 1544 aa17.71■□□□□ 0.43
PCF11-204ENST00000530660 ZNF608Q9ULD9 1512 aaPredicted RBP17.71■□□□□ 0.43
PCF11-204ENST00000530660 CCDC146Q8IYE0 955 aa17.7■□□□□ 0.42
PCF11-204ENST00000530660 ANKRD50Q9ULJ7 1429 aa17.7■□□□□ 0.42
PCF11-204ENST00000530660 TAF7LQ5H9L4 462 aa17.7■□□□□ 0.42
PCF11-204ENST00000530660 SASS6Q6UVJ0 657 aa17.7■□□□□ 0.42
PCF11-204ENST00000530660 PAXIP1Q6ZW49 1069 aaPredicted RBP17.7■□□□□ 0.42
PCF11-204ENST00000530660 PCDHB15Q9Y5E8 787 aa17.7■□□□□ 0.42
PCF11-204ENST00000530660 KIF20AO95235 890 aa17.7■□□□□ 0.42
PCF11-204ENST00000530660 WDR43Q15061 677 aaKnown RBP eCLIP17.69■□□□□ 0.422e-6■□□□□ 10.4
PCF11-204ENST00000530660 INSRP06213 1382 aa17.69■□□□□ 0.42
PCF11-204ENST00000530660 GTPBP4Q9BZE4 634 aaKnown RBP17.69■□□□□ 0.42
PCF11-204ENST00000530660 ANKRD30AQ9BXX3 1397 aa17.68■□□□□ 0.42
PCF11-204ENST00000530660 DDX49Q9Y6V7 483 aaKnown RBP17.68■□□□□ 0.42
PCF11-204ENST00000530660 RAB3GAP1Q15042 981 aa17.68■□□□□ 0.42
PCF11-204ENST00000530660 ATP2B3Q16720 1220 aa17.68■□□□□ 0.42
PCF11-204ENST00000530660 PRG4Q92954 1404 aaPredicted RBP17.68■□□□□ 0.42
PCF11-204ENST00000530660 DISP3Q9P2K9 1392 aa17.68■□□□□ 0.42
PCF11-204ENST00000530660 ADGBQ8N7X0 1667 aa17.67■□□□□ 0.42
PCF11-204ENST00000530660 ZKSCAN5Q9Y2L8 839 aa17.67■□□□□ 0.42
PCF11-204ENST00000530660 FAM177BA6PVY3 158 aa17.67■□□□□ 0.42
PCF11-204ENST00000530660 NUP153P49790 1475 aaKnown RBP17.66■□□□□ 0.42
PCF11-204ENST00000530660 MAPK8IP2Q13387 824 aaPredicted RBP17.66■□□□□ 0.42
PCF11-204ENST00000530660 RGL3Q3MIN7 710 aa17.66■□□□□ 0.42
PCF11-204ENST00000530660 HS1BP3Q53T59 392 aa17.66■□□□□ 0.42
PCF11-204ENST00000530660 ZNF710Q8N1W2 664 aa17.66■□□□□ 0.42
PCF11-204ENST00000530660 DMRT2Q9Y5R5 561 aa17.66■□□□□ 0.42
PCF11-204ENST00000530660 CSPP1Q1MSJ5 1256 aa17.65■□□□□ 0.42
PCF11-204ENST00000530660 LETM1O95202 739 aaPredicted RBP17.65■□□□□ 0.42
PCF11-204ENST00000530660 RBSNQ9H1K0 784 aa17.65■□□□□ 0.42
PCF11-204ENST00000530660 ADGRL2O95490 1459 aa17.65■□□□□ 0.42
PCF11-204ENST00000530660 HSP90AB1P08238 724 aaKnown RBP17.65■□□□□ 0.42
PCF11-204ENST00000530660 TRMT2AQ8IZ69 625 aaKnown RBP17.65■□□□□ 0.42
PCF11-204ENST00000530660 NCOA3Q9Y6Q9 1424 aa17.65■□□□□ 0.42
PCF11-204ENST00000530660 PDE3AQ14432 1141 aa17.64■□□□□ 0.41
PCF11-204ENST00000530660 TNNQ9UQP3 1299 aa17.64■□□□□ 0.41
PCF11-204ENST00000530660 NKTRP30414 1462 aaKnown RBP17.64■□□□□ 0.41
PCF11-204ENST00000530660 SSFA2P28290 1259 aa17.64■□□□□ 0.41
PCF11-204ENST00000530660 SPDYE4A6NLX3 237 aa17.64■□□□□ 0.41
PCF11-204ENST00000530660 CGNQ9P2M7 1197 aaKnown RBP17.63■□□□□ 0.41
PCF11-204ENST00000530660 PDLIM2Q96JY6 352 aa17.63■□□□□ 0.41
PCF11-204ENST00000530660 TESK2Q96S53 571 aa17.62■□□□□ 0.41
PCF11-204ENST00000530660 GPATCH8Q9UKJ3 1502 aaKnown RBP17.62■□□□□ 0.41
PCF11-204ENST00000530660 APAF1O14727 1248 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms