RNA–Protein interactions for RNA: ENST00000524773.5

CAPN1-202, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-202ENST00000524773 CDC42BPBQ9Y5S2 1711 aa17.12■□□□□ 0.33
CAPN1-202ENST00000524773 SPRYD3Q8NCJ5 442 aa17.12■□□□□ 0.33
CAPN1-202ENST00000524773 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.11■□□□□ 0.332e-8■■■■□ 22.3
CAPN1-202ENST00000524773 POGKQ9P215 609 aa17.11■□□□□ 0.33
CAPN1-202ENST00000524773 PREX2Q70Z35 1606 aa17.11■□□□□ 0.33
CAPN1-202ENST00000524773 PANK1Q8TE04 598 aa17.11■□□□□ 0.33
CAPN1-202ENST00000524773 MAGI2Q86UL8 1455 aa17.11■□□□□ 0.33
CAPN1-202ENST00000524773 ZMYM4Q5VZL5 1548 aa17.11■□□□□ 0.33
CAPN1-202ENST00000524773 TTC37Q6PGP7 1564 aa17.1■□□□□ 0.33
CAPN1-202ENST00000524773 TRPM1Q7Z4N2 1603 aa17.1■□□□□ 0.33
CAPN1-202ENST00000524773 COG6Q9Y2V7 657 aa17.09■□□□□ 0.33
CAPN1-202ENST00000524773 TNNT2P45379 298 aaPredicted RBP17.09■□□□□ 0.33
CAPN1-202ENST00000524773 SLFN5Q08AF3 891 aa17.09■□□□□ 0.33
CAPN1-202ENST00000524773 ARHGAP5Q13017 1502 aa17.08■□□□□ 0.33
CAPN1-202ENST00000524773 AMER1Q5JTC6 1135 aaPredicted RBP17.08■□□□□ 0.33
CAPN1-202ENST00000524773 RSPH4AQ5TD94 716 aa17.08■□□□□ 0.33
CAPN1-202ENST00000524773 TNNQ9UQP3 1299 aa17.08■□□□□ 0.33
CAPN1-202ENST00000524773 RRP7AQ9Y3A4 280 aaKnown RBP17.07■□□□□ 0.32
CAPN1-202ENST00000524773 SAMD9LQ8IVG5 1584 aa17.07■□□□□ 0.32
CAPN1-202ENST00000524773 BCL2L13Q9BXK5 485 aa17.07■□□□□ 0.32
CAPN1-202ENST00000524773 ARHGEF5Q12774 1597 aa17.07■□□□□ 0.32
CAPN1-202ENST00000524773 MYO5CQ9NQX4 1742 aa17.06■□□□□ 0.32
CAPN1-202ENST00000524773 ZNF521Q96K83 1311 aa17.06■□□□□ 0.32
CAPN1-202ENST00000524773 CANXP27824 592 aaKnown RBP17.05■□□□□ 0.32
CAPN1-202ENST00000524773 PLEKHH2Q8IVE3 1493 aa17.04■□□□□ 0.32
CAPN1-202ENST00000524773 USP19O94966 1318 aa17.04■□□□□ 0.32
CAPN1-202ENST00000524773 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.04■□□□□ 0.32
CAPN1-202ENST00000524773 CCDC141Q6ZP82 1450 aa17.04■□□□□ 0.32
CAPN1-202ENST00000524773 GPRASP1Q5JY77 1395 aa17.02■□□□□ 0.32
CAPN1-202ENST00000524773 PLPPR3Q6T4P5 718 aa17.02■□□□□ 0.32
CAPN1-202ENST00000524773 PLCH2O75038 1416 aa17.02■□□□□ 0.32
CAPN1-202ENST00000524773 EFCAB2Q5VUJ9 269 aa17.02■□□□□ 0.31
CAPN1-202ENST00000524773 CLUAP1Q96AJ1 413 aa17.02■□□□□ 0.31
CAPN1-202ENST00000524773 SYCP2Q9BX26 1530 aa17.02■□□□□ 0.31
CAPN1-202ENST00000524773 WDR7Q9Y4E6 1490 aa17.01■□□□□ 0.31
CAPN1-202ENST00000524773 GZF1Q9H116 711 aaPredicted RBP17■□□□□ 0.31
CAPN1-202ENST00000524773 INSRP06213 1382 aa16.99■□□□□ 0.31
CAPN1-202ENST00000524773 PRDM15P57071 1507 aaPredicted RBP16.99■□□□□ 0.31
CAPN1-202ENST00000524773 SENP3Q9H4L4 574 aaPredicted RBP16.98■□□□□ 0.31
CAPN1-202ENST00000524773 NPM1P06748 294 aaKnown RBP eCLIP16.98■□□□□ 0.31
CAPN1-202ENST00000524773 RLBP1P12271 317 aa16.96■□□□□ 0.31
CAPN1-202ENST00000524773 TRMT2AQ8IZ69 625 aaKnown RBP16.95■□□□□ 0.3
CAPN1-202ENST00000524773 CARD14Q9BXL6 1004 aa16.95■□□□□ 0.3
CAPN1-202ENST00000524773 PCDHB15Q9Y5E8 787 aa16.94■□□□□ 0.3
CAPN1-202ENST00000524773 ASXL2Q76L83 1435 aa16.94■□□□□ 0.3
CAPN1-202ENST00000524773 LAMC1P11047 1609 aa16.94■□□□□ 0.3
CAPN1-202ENST00000524773 RRAGDQ9NQL2 400 aaPredicted RBP16.94■□□□□ 0.3
CAPN1-202ENST00000524773 CENPJQ9HC77 1338 aaPredicted RBP16.93■□□□□ 0.3
CAPN1-202ENST00000524773 NKTRP30414 1462 aaKnown RBP16.93■□□□□ 0.3
CAPN1-202ENST00000524773 CFAP70Q5T0N1 1121 aa16.92■□□□□ 0.3
CAPN1-202ENST00000524773 E9PSI1 815 aa16.92■□□□□ 0.3
CAPN1-202ENST00000524773 MAST1Q9Y2H9 1570 aa16.91■□□□□ 0.3
CAPN1-202ENST00000524773 WWC1Q8IX03 1113 aa16.91■□□□□ 0.3
CAPN1-202ENST00000524773 ARAP3Q8WWN8 1544 aa16.9■□□□□ 0.3
CAPN1-202ENST00000524773 EIF3AQ14152 1382 aaKnown RBP16.9■□□□□ 0.3
CAPN1-202ENST00000524773 ABCC1P33527 1531 aa16.89■□□□□ 0.3
CAPN1-202ENST00000524773 PANK2Q9BZ23 570 aa16.89■□□□□ 0.3
CAPN1-202ENST00000524773 UNC13BO14795 1591 aa16.89■□□□□ 0.29
CAPN1-202ENST00000524773 TBC1D2Q9BYX2 928 aa16.89■□□□□ 0.29
CAPN1-202ENST00000524773 PDZRN3Q9UPQ7 1066 aa16.89■□□□□ 0.29
CAPN1-202ENST00000524773 TRAPPC8Q9Y2L5 1435 aa16.88■□□□□ 0.29
CAPN1-202ENST00000524773 AFAP1Q8N556 730 aa16.88■□□□□ 0.29
CAPN1-202ENST00000524773 ABCA9Q8IUA7 1624 aa16.88■□□□□ 0.29
CAPN1-202ENST00000524773 EIF2AK4Q9P2K8 1649 aaKnown RBP16.88■□□□□ 0.29
CAPN1-202ENST00000524773 FANCAO15360 1455 aa16.87■□□□□ 0.29
CAPN1-202ENST00000524773 ASXL1Q8IXJ9 1541 aa16.87■□□□□ 0.29
CAPN1-202ENST00000524773 BECN1Q14457 450 aa16.86■□□□□ 0.29
CAPN1-202ENST00000524773 ATP10AO60312 1499 aa16.86■□□□□ 0.29
CAPN1-202ENST00000524773 FAM43AQ8N2R8 423 aa16.86■□□□□ 0.29
CAPN1-202ENST00000524773 SPAG9O60271 1321 aaKnown RBP16.85■□□□□ 0.29
CAPN1-202ENST00000524773 PLXNC1O60486 1568 aa16.85■□□□□ 0.29
CAPN1-202ENST00000524773 CGNL1Q0VF96 1302 aa16.85■□□□□ 0.29
CAPN1-202ENST00000524773 ANTXR1Q9H6X2 564 aa16.85■□□□□ 0.29
CAPN1-202ENST00000524773 RARSP54136 660 aaKnown RBP16.84■□□□□ 0.29
CAPN1-202ENST00000524773 MFAP1P55081 439 aaKnown RBP16.84■□□□□ 0.29
CAPN1-202ENST00000524773 TCP11L2Q8N4U5 519 aa16.84■□□□□ 0.29
CAPN1-202ENST00000524773 IQGAP3Q86VI3 1631 aa16.84■□□□□ 0.29
CAPN1-202ENST00000524773 CHGAP10645 457 aaKnown RBP16.83■□□□□ 0.28
CAPN1-202ENST00000524773 CDCA8Q53HL2 280 aa16.83■□□□□ 0.28
CAPN1-202ENST00000524773 ADGRF5Q8IZF2 1346 aa16.83■□□□□ 0.28
CAPN1-202ENST00000524773 SLC12A5Q9H2X9 1139 aa16.83■□□□□ 0.28
CAPN1-202ENST00000524773 DUOX2Q9NRD8 1548 aa16.83■□□□□ 0.28
CAPN1-202ENST00000524773 PDE3AQ14432 1141 aa16.83■□□□□ 0.28
CAPN1-202ENST00000524773 PIK3C2GO75747 1445 aa16.82■□□□□ 0.28
CAPN1-202ENST00000524773 NLRP1Q9C000 1473 aa16.82■□□□□ 0.28
CAPN1-202ENST00000524773 MAPK8IP3Q9UPT6 1336 aa16.81■□□□□ 0.28
CAPN1-202ENST00000524773 XRCC6P12956 609 aaKnown RBP eCLIP16.81■□□□□ 0.28
CAPN1-202ENST00000524773 TSR2Q969E8 191 aaKnown RBP16.81■□□□□ 0.28
CAPN1-202ENST00000524773 MORC1Q86VD1 984 aa16.8■□□□□ 0.28
CAPN1-202ENST00000524773 TBC1D32Q96NH3 1257 aa16.8■□□□□ 0.28
CAPN1-202ENST00000524773 TRAK1Q9UPV9 953 aa16.8■□□□□ 0.28
CAPN1-202ENST00000524773 ADGRL1O94910 1474 aa16.8■□□□□ 0.28
CAPN1-202ENST00000524773 CYB5RLQ6IPT4 315 aa16.8■□□□□ 0.28
CAPN1-202ENST00000524773 STAC3Q96MF2 364 aa16.8■□□□□ 0.28
CAPN1-202ENST00000524773 UPF2Q9HAU5 1272 aaKnown RBP16.8■□□□□ 0.28
CAPN1-202ENST00000524773 SCAPERQ9BY12 1400 aa16.8■□□□□ 0.28
CAPN1-202ENST00000524773 SCAF11Q99590 1463 aaKnown RBP16.8■□□□□ 0.28
CAPN1-202ENST00000524773 RTEL1-TNFRSF6BF6WH68 1400 aa16.79■□□□□ 0.28
CAPN1-202ENST00000524773 NUTM2DQ5VT03 806 aaPredicted RBP16.79■□□□□ 0.28
CAPN1-202ENST00000524773 UBE2Q2Q8WVN8 375 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms