RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 NWD1Q149M9 1564 aa18.33■□□□□ 0.52
SDCBP-211ENST00000523441 ADGRB3O60242 1522 aa18.33■□□□□ 0.52
SDCBP-211ENST00000523441 NKTRP30414 1462 aaKnown RBP18.32■□□□□ 0.52
SDCBP-211ENST00000523441 LOC105371045A0A1W2PR82 267 aa18.31■□□□□ 0.52
SDCBP-211ENST00000523441 GCC2Q8IWJ2 1684 aa18.31■□□□□ 0.52
SDCBP-211ENST00000523441 LRP6O75581 1613 aa18.31■□□□□ 0.52
SDCBP-211ENST00000523441 COL16A1Q07092 1604 aaPredicted RBP18.31■□□□□ 0.52
SDCBP-211ENST00000523441 CHD2O14647 1828 aaKnown RBP18.3■□□□□ 0.52
SDCBP-211ENST00000523441 DAPK1P53355 1430 aa18.3■□□□□ 0.52
SDCBP-211ENST00000523441 NUTM2BA6NNL0 878 aaPredicted RBP18.29■□□□□ 0.52
SDCBP-211ENST00000523441 NUTM2EB1AL46 878 aaPredicted RBP18.29■□□□□ 0.52
SDCBP-211ENST00000523441 CHGAP10645 457 aaKnown RBP18.29■□□□□ 0.52
SDCBP-211ENST00000523441 NUTM2DQ5VT03 806 aaPredicted RBP18.29■□□□□ 0.52
SDCBP-211ENST00000523441 NUTM2AQ8IVF1 878 aaPredicted RBP18.29■□□□□ 0.52
SDCBP-211ENST00000523441 UPF1Q92900 1129 aaKnown RBP eCLIP18.28■□□□□ 0.52
SDCBP-211ENST00000523441 LMTK2Q8IWU2 1503 aa18.24■□□□□ 0.51
SDCBP-211ENST00000523441 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.24■□□□□ 0.51
SDCBP-211ENST00000523441 ZNF772Q68DY9 489 aaPredicted RBP18.24■□□□□ 0.51
SDCBP-211ENST00000523441 ANKRD30AQ9BXX3 1397 aa18.24■□□□□ 0.51
SDCBP-211ENST00000523441 NOS1P29475 1434 aa18.23■□□□□ 0.51
SDCBP-211ENST00000523441 RIMS2Q9UQ26 1411 aa18.23■□□□□ 0.51
SDCBP-211ENST00000523441 APLP2Q06481 763 aa18.23■□□□□ 0.51
SDCBP-211ENST00000523441 SPATA31A6Q5VVP1 1343 aa18.22■□□□□ 0.51
SDCBP-211ENST00000523441 ATF3P18847 181 aa18.21■□□□□ 0.51
SDCBP-211ENST00000523441 RXRBP28702 533 aa18.21■□□□□ 0.51
SDCBP-211ENST00000523441 SLC52A1Q9NWF4 448 aa18.21■□□□□ 0.51
SDCBP-211ENST00000523441 SHPRHQ149N8 1683 aa18.21■□□□□ 0.51
SDCBP-211ENST00000523441 PLEKHG1Q9ULL1 1385 aa18.2■□□□□ 0.5
SDCBP-211ENST00000523441 ZFYVE9O95405 1425 aa18.19■□□□□ 0.5
SDCBP-211ENST00000523441 FGD6Q6ZV73 1430 aa18.19■□□□□ 0.5
SDCBP-211ENST00000523441 FAM50AQ14320 339 aaKnown RBP18.18■□□□□ 0.5
SDCBP-211ENST00000523441 TMEM131LA2VDJ0 1609 aa18.18■□□□□ 0.5
SDCBP-211ENST00000523441 HDGFP51858 240 aaKnown RBP18.17■□□□□ 0.5
SDCBP-211ENST00000523441 AHDC1Q5TGY3 1603 aaPredicted RBP18.16■□□□□ 0.5
SDCBP-211ENST00000523441 CADPS2Q86UW7 1296 aa18.16■□□□□ 0.5
SDCBP-211ENST00000523441 AFF2P51816 1311 aa18.16■□□□□ 0.5
SDCBP-211ENST00000523441 C19orf44Q9H6X5 657 aa18.14■□□□□ 0.49
SDCBP-211ENST00000523441 TBX22Q9Y458 520 aa18.14■□□□□ 0.49
SDCBP-211ENST00000523441 BRINP3Q76B58 766 aa18.13■□□□□ 0.49
SDCBP-211ENST00000523441 C8orf37Q96NL8 207 aa18.12■□□□□ 0.49
SDCBP-211ENST00000523441 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.11■□□□□ 0.49
SDCBP-211ENST00000523441 DDX17Q92841 729 aaKnown RBP18.11■□□□□ 0.49
SDCBP-211ENST00000523441 AMOTL2Q9Y2J4 779 aa18.11■□□□□ 0.49
SDCBP-211ENST00000523441 ADAMTS13Q76LX8 1427 aa18.11■□□□□ 0.49
SDCBP-211ENST00000523441 DIP2AQ14689 1571 aa18.11■□□□□ 0.49
SDCBP-211ENST00000523441 E9PCH4 1651 aa18.1■□□□□ 0.49
SDCBP-211ENST00000523441 RPRD2Q5VT52 1461 aaKnown RBP18.1■□□□□ 0.49
SDCBP-211ENST00000523441 ANKRD50Q9ULJ7 1429 aa18.1■□□□□ 0.49
SDCBP-211ENST00000523441 TRPM2O94759 1503 aa18.08■□□□□ 0.49
SDCBP-211ENST00000523441 NCOA3Q9Y6Q9 1424 aa18.08■□□□□ 0.49
SDCBP-211ENST00000523441 ASXL1Q8IXJ9 1541 aa18.08■□□□□ 0.48
SDCBP-211ENST00000523441 PTPRUQ92729 1446 aa18.07■□□□□ 0.48
SDCBP-211ENST00000523441 QTRT2Q9H974 415 aaKnown RBP18.07■□□□□ 0.48
SDCBP-211ENST00000523441 ADGRL2O95490 1459 aa18.07■□□□□ 0.48
SDCBP-211ENST00000523441 RGS12O14924 1447 aa18.06■□□□□ 0.48
SDCBP-211ENST00000523441 ADAMTS2O95450 1211 aa18.06■□□□□ 0.48
SDCBP-211ENST00000523441 UNC13BO14795 1591 aa18.05■□□□□ 0.48
SDCBP-211ENST00000523441 NHSL1Q5SYE7 1610 aa18.05■□□□□ 0.48
SDCBP-211ENST00000523441 CDK12Q9NYV4 1490 aaPredicted RBP18.03■□□□□ 0.48
SDCBP-211ENST00000523441 ZNF326Q5BKZ1 582 aaKnown RBP18.02■□□□□ 0.48
SDCBP-211ENST00000523441 NGLY1Q96IV0 654 aa18.02■□□□□ 0.48
SDCBP-211ENST00000523441 PIK3R4Q99570 1358 aa18.02■□□□□ 0.47
SDCBP-211ENST00000523441 MST1RQ04912 1400 aa18.01■□□□□ 0.47
SDCBP-211ENST00000523441 RBM6P78332 1123 aaKnown RBP18.01■□□□□ 0.47
SDCBP-211ENST00000523441 LRRC59Q96AG4 307 aaKnown RBP18.01■□□□□ 0.47
SDCBP-211ENST00000523441 XRN1Q8IZH2 1706 aaKnown RBP18■□□□□ 0.47
SDCBP-211ENST00000523441 SETD5Q9C0A6 1442 aa17.99■□□□□ 0.47
SDCBP-211ENST00000523441 NRXN3Q9Y4C0 1643 aa17.99■□□□□ 0.47
SDCBP-211ENST00000523441 ITGAEP38570 1179 aa17.99■□□□□ 0.47
SDCBP-211ENST00000523441 NALCNQ8IZF0 1738 aa17.98■□□□□ 0.47
SDCBP-211ENST00000523441 PNPLA6Q8IY17 1366 aa17.98■□□□□ 0.47
SDCBP-211ENST00000523441 IQGAP3Q86VI3 1631 aa17.97■□□□□ 0.47
SDCBP-211ENST00000523441 DCCP43146 1447 aa17.96■□□□□ 0.47
SDCBP-211ENST00000523441 NUP155O75694 1391 aa17.95■□□□□ 0.46
SDCBP-211ENST00000523441 METP08581 1390 aa17.95■□□□□ 0.46
SDCBP-211ENST00000523441 ATAD2Q6PL18 1390 aa17.93■□□□□ 0.46
SDCBP-211ENST00000523441 SPHKAPQ2M3C7 1700 aa17.93■□□□□ 0.46
SDCBP-211ENST00000523441 USP21Q9UK80 565 aa17.93■□□□□ 0.46
SDCBP-211ENST00000523441 SRCAPQ6ZRS2 3230 aa17.93■□□□□ 0.46
SDCBP-211ENST00000523441 SETBP1Q9Y6X0 1596 aa17.91■□□□□ 0.46
SDCBP-211ENST00000523441 ADGRL3Q9HAR2 1447 aa17.91■□□□□ 0.46
SDCBP-211ENST00000523441 ZRANB1Q9UGI0 708 aa17.91■□□□□ 0.46
SDCBP-211ENST00000523441 ORAI2Q96SN7 254 aa17.9■□□□□ 0.46
SDCBP-211ENST00000523441 C1orf167Q5SNV9 1468 aa17.88■□□□□ 0.45
SDCBP-211ENST00000523441 TRPC5Q9UL62 973 aaPredicted RBP17.87■□□□□ 0.45
SDCBP-211ENST00000523441 KIF1BO60333 1816 aa17.84■□□□□ 0.45
SDCBP-211ENST00000523441 CLTCL1P53675 1640 aa17.84■□□□□ 0.45
SDCBP-211ENST00000523441 XPCQ01831 940 aaPredicted RBP17.84■□□□□ 0.45
SDCBP-211ENST00000523441 PPARGC1BQ86YN6 1023 aaKnown RBP17.84■□□□□ 0.45
SDCBP-211ENST00000523441 NEXMIFQ5QGS0 1516 aa17.83■□□□□ 0.45
SDCBP-211ENST00000523441 FOXD1Q16676 465 aa17.83■□□□□ 0.44
SDCBP-211ENST00000523441 PLEKHG5O94827 1062 aa17.81■□□□□ 0.44
SDCBP-211ENST00000523441 MARF1Q9Y4F3 1742 aaKnown RBP17.81■□□□□ 0.44
SDCBP-211ENST00000523441 ATRNO75882 1429 aa17.81■□□□□ 0.44
SDCBP-211ENST00000523441 ROCK1Q13464 1354 aa17.8■□□□□ 0.44
SDCBP-211ENST00000523441 SOS2Q07890 1332 aaPredicted RBP17.8■□□□□ 0.44
SDCBP-211ENST00000523441 NUTM2FA1L443 756 aa17.8■□□□□ 0.44
SDCBP-211ENST00000523441 ROBO2Q9HCK4 1378 aa17.79■□□□□ 0.44
SDCBP-211ENST00000523441 EP400Q96L91 3159 aa17.79■□□□□ 0.44
SDCBP-211ENST00000523441 ESCO1Q5FWF5 840 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms