RNA–Protein interactions for RNA: ENST00000522552.5

SKP1-209, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SKP1, Length 1,683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-209ENST00000522552 POLR3EQ9NVU0 708 aa6.11□□□□□ -1.43
SKP1-209ENST00000522552 POM121CA8CG34 1229 aa6.1□□□□□ -1.43
SKP1-209ENST00000522552 CSB-PGBD3P0DP91 1061 aa6.1□□□□□ -1.43
SKP1-209ENST00000522552 TMUB1Q9BVT8 246 aa6.1□□□□□ -1.43
SKP1-209ENST00000522552 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.1□□□□□ -1.43
SKP1-209ENST00000522552 RBM47A0AV96 593 aaKnown RBP6.1□□□□□ -1.43
SKP1-209ENST00000522552 TBC1D12O60347 775 aa6.1□□□□□ -1.43
SKP1-209ENST00000522552 EMP3P54852 163 aa6.1□□□□□ -1.43
SKP1-209ENST00000522552 PCDHGA4Q9Y5G9 962 aa6.1□□□□□ -1.43
SKP1-209ENST00000522552 NUDT7P0C024 238 aa6.09□□□□□ -1.43
SKP1-209ENST00000522552 OSBPP22059 807 aa6.09□□□□□ -1.43
SKP1-209ENST00000522552 GPR153Q6NV75 609 aa6.09□□□□□ -1.43
SKP1-209ENST00000522552 PPM1GO15355 546 aaPredicted RBP6.08□□□□□ -1.44
SKP1-209ENST00000522552 RFC5P40937 340 aa6.08□□□□□ -1.44
SKP1-209ENST00000522552 SLC34A2O95436 690 aa6.07□□□□□ -1.44
SKP1-209ENST00000522552 HOXB1P14653 301 aaPredicted RBP6.07□□□□□ -1.44
SKP1-209ENST00000522552 RFX1P22670 979 aa6.07□□□□□ -1.44
SKP1-209ENST00000522552 CLCN1P35523 988 aa6.07□□□□□ -1.44
SKP1-209ENST00000522552 SRPK2P78362 688 aaKnown RBP6.07□□□□□ -1.44
SKP1-209ENST00000522552 WWC1Q8IX03 1113 aa6.07□□□□□ -1.44
SKP1-209ENST00000522552 BEGAINQ9BUH8 593 aa6.07□□□□□ -1.44
SKP1-209ENST00000522552 KIAA1522Q9P206 1035 aaPredicted RBP6.07□□□□□ -1.44
SKP1-209ENST00000522552 FAM205CA6NFA0 338 aa6.07□□□□□ -1.44
SKP1-209ENST00000522552 SSTR3P32745 418 aaPredicted RBP6.07□□□□□ -1.44
SKP1-209ENST00000522552 MTMR14Q8NCE2 650 aa6.07□□□□□ -1.44
SKP1-209ENST00000522552 PTCD2Q8WV60 388 aaKnown RBP6.07□□□□□ -1.44
SKP1-209ENST00000522552 ZSWIM6Q9HCJ5 1215 aa6.07□□□□□ -1.44
SKP1-209ENST00000522552 GPCPD1Q9NPB8 672 aa6.07□□□□□ -1.44
SKP1-209ENST00000522552 ABL2P42684 1182 aa6.06□□□□□ -1.44
SKP1-209ENST00000522552 MYSM1Q5VVJ2 828 aa6.06□□□□□ -1.44
SKP1-209ENST00000522552 FBXO31Q5XUX0 539 aaPredicted RBP6.06□□□□□ -1.44
SKP1-209ENST00000522552 MAP3K9P80192 1104 aa6.05□□□□□ -1.44
SKP1-209ENST00000522552 MDM2Q00987 491 aaPredicted RBP6.05□□□□□ -1.44
SKP1-209ENST00000522552 CFAP70Q5T0N1 1121 aa6.05□□□□□ -1.44
SKP1-209ENST00000522552 POLR3GLQ9BT43 218 aa6.05□□□□□ -1.44
SKP1-209ENST00000522552 CLK2P49760 499 aaKnown RBP6.04□□□□□ -1.44
SKP1-209ENST00000522552 PTGDRQ13258 359 aa6.04□□□□□ -1.44
SKP1-209ENST00000522552 DHX37Q8IY37 1157 aaKnown RBP6.04□□□□□ -1.44
SKP1-209ENST00000522552 MRRFQ96E11 262 aaKnown RBP6.04□□□□□ -1.44
SKP1-209ENST00000522552 VRTNQ9H8Y1 702 aa6.04□□□□□ -1.44
SKP1-209ENST00000522552 ERBB3P21860 1342 aa6.04□□□□□ -1.44
SKP1-209ENST00000522552 POTEB3A0JP26 581 aa6.04□□□□□ -1.44
SKP1-209ENST00000522552 TMEM259Q4ZIN3 620 aa6.04□□□□□ -1.44
SKP1-209ENST00000522552 VARS2Q5ST30 1063 aaKnown RBP6.04□□□□□ -1.44
SKP1-209ENST00000522552 POTEBQ6S5H4 581 aa6.04□□□□□ -1.44
SKP1-209ENST00000522552 EVI5O60447 810 aa6.03□□□□□ -1.44
SKP1-209ENST00000522552 TXNDC2Q86VQ3 553 aa6.03□□□□□ -1.44
SKP1-209ENST00000522552 HS3ST6Q96QI5 342 aa6.03□□□□□ -1.44
SKP1-209ENST00000522552 LHX6Q9UPM6 363 aa6.03□□□□□ -1.44
SKP1-209ENST00000522552 TBC1D2BQ9UPU7 963 aa6.03□□□□□ -1.44
SKP1-209ENST00000522552 CANXP27824 592 aaKnown RBP6.02□□□□□ -1.45
SKP1-209ENST00000522552 ADAMTS19Q8TE59 1207 aa6.02□□□□□ -1.45
SKP1-209ENST00000522552 PHOX2BQ99453 314 aa6.02□□□□□ -1.45
SKP1-209ENST00000522552 GNEQ9Y223 722 aaKnown RBP6.02□□□□□ -1.45
SKP1-209ENST00000522552 TMEM88BA6NKF7 163 aa6.01□□□□□ -1.45
SKP1-209ENST00000522552 PRIM1P49642 420 aaKnown RBP6.01□□□□□ -1.45
SKP1-209ENST00000522552 HDGFL1Q5TGJ6 251 aa6.01□□□□□ -1.45
SKP1-209ENST00000522552 RNF166Q96A37 237 aaPredicted RBP6.01□□□□□ -1.45
SKP1-209ENST00000522552 SMARCA5O60264 1052 aaPredicted RBP6.01□□□□□ -1.45
SKP1-209ENST00000522552 FAM217BQ9NTX9 383 aaPredicted RBP6.01□□□□□ -1.45
SKP1-209ENST00000522552 KDM4FA0A1W2PPD8 638 aa6□□□□□ -1.45
SKP1-209ENST00000522552 PPP2R2DQ66LE6 453 aa6□□□□□ -1.45
SKP1-209ENST00000522552 SPATA32Q96LK8 384 aa6□□□□□ -1.45
SKP1-209ENST00000522552 DRC1Q96MC2 740 aa6□□□□□ -1.45
SKP1-209ENST00000522552 PPP1R12CQ9BZL4 782 aa5.99□□□□□ -1.45
SKP1-209ENST00000522552 CWC22Q9HCG8 908 aaKnown RBP5.99□□□□□ -1.45
SKP1-209ENST00000522552 SOCS7O14512 581 aa5.98□□□□□ -1.45
SKP1-209ENST00000522552 TCF3P15923 654 aa5.98□□□□□ -1.45
SKP1-209ENST00000522552 DNAJC14Q6Y2X3 702 aaPredicted RBP5.98□□□□□ -1.45
SKP1-209ENST00000522552 ZNF454Q8N9F8 522 aa5.98□□□□□ -1.45
SKP1-209ENST00000522552 DDX12PQ92771 950 aa5.98□□□□□ -1.45
SKP1-209ENST00000522552 PRM3Q9NNZ6 103 aa5.98□□□□□ -1.45
SKP1-209ENST00000522552 ZNF16P17020 682 aaPredicted RBP5.98□□□□□ -1.45
SKP1-209ENST00000522552 BRD2P25440 801 aaKnown RBP5.98□□□□□ -1.45
SKP1-209ENST00000522552 SREK1Q8WXA9 508 aaKnown RBP5.98□□□□□ -1.45
SKP1-209ENST00000522552 LIMD1Q9UGP4 676 aa5.98□□□□□ -1.45
SKP1-209ENST00000522552 PTGER2P43116 358 aa5.97□□□□□ -1.45
SKP1-209ENST00000522552 TBC1D2Q9BYX2 928 aa5.97□□□□□ -1.45
SKP1-209ENST00000522552 PALM3A6NDB9 673 aaPredicted RBP5.96□□□□□ -1.46
SKP1-209ENST00000522552 LMOD1P29536 600 aaPredicted RBP5.96□□□□□ -1.46
SKP1-209ENST00000522552 C8orf37Q96NL8 207 aa5.96□□□□□ -1.46
SKP1-209ENST00000522552 AXIN2Q9Y2T1 843 aa5.96□□□□□ -1.46
SKP1-209ENST00000522552 ATG7O95352 703 aa5.95□□□□□ -1.46
SKP1-209ENST00000522552 ERCC3P19447 782 aa5.95□□□□□ -1.46
SKP1-209ENST00000522552 SIRT1Q96EB6 747 aa5.95□□□□□ -1.46
SKP1-209ENST00000522552 KRTAP3-3Q9BYR6 98 aa5.95□□□□□ -1.46
SKP1-209ENST00000522552 KRTAP3-2Q9BYR7 98 aa5.95□□□□□ -1.46
SKP1-209ENST00000522552 ANO8Q9HCE9 1232 aaPredicted RBP5.95□□□□□ -1.46
SKP1-209ENST00000522552 NOM1Q5C9Z4 860 aaKnown RBP5.94□□□□□ -1.46
SKP1-209ENST00000522552 PPP4R3BQ5MIZ7 849 aa5.94□□□□□ -1.46
SKP1-209ENST00000522552 FOSBP53539 338 aa5.94□□□□□ -1.46
SKP1-209ENST00000522552 CDCA8Q53HL2 280 aa5.94□□□□□ -1.46
SKP1-209ENST00000522552 B4GALNT3Q6L9W6 998 aa5.94□□□□□ -1.46
SKP1-209ENST00000522552 NLRP7Q8WX94 980 aa5.94□□□□□ -1.46
SKP1-209ENST00000522552 JPH4Q96JJ6 628 aa5.94□□□□□ -1.46
SKP1-209ENST00000522552 BCL2L13Q9BXK5 485 aa5.94□□□□□ -1.46
SKP1-209ENST00000522552 PCDHGA10Q9Y5H3 936 aa5.94□□□□□ -1.46
SKP1-209ENST00000522552 LOC100996750A0A140TA64 210 aa5.93□□□□□ -1.46
SKP1-209ENST00000522552 ZNF687Q8N1G0 1237 aa5.93□□□□□ -1.46
SKP1-209ENST00000522552 CCER1Q8TC90 406 aaPredicted RBP5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms