RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 MARVELD3Q96A59 401 aa8.27□□□□□ -1.09
HMGB1P23-201ENST00000518743 TMUB1Q9BVT8 246 aa8.27□□□□□ -1.09
HMGB1P23-201ENST00000518743 TARBP1Q13395 1621 aaKnown RBP8.26□□□□□ -1.09
HMGB1P23-201ENST00000518743 RAD21O60216 631 aa8.26□□□□□ -1.09
HMGB1P23-201ENST00000518743 HOXB3P14651 431 aaPredicted RBP8.26□□□□□ -1.09
HMGB1P23-201ENST00000518743 SSTR3P32745 418 aaPredicted RBP8.26□□□□□ -1.09
HMGB1P23-201ENST00000518743 PODXL2Q9NZ53 605 aa8.26□□□□□ -1.09
HMGB1P23-201ENST00000518743 RBM27Q9P2N5 1060 aaKnown RBP8.26□□□□□ -1.09
HMGB1P23-201ENST00000518743 PRDM2Q13029 1718 aa8.26□□□□□ -1.09
HMGB1P23-201ENST00000518743 MDM2Q00987 491 aaPredicted RBP8.25□□□□□ -1.09
HMGB1P23-201ENST00000518743 JPH4Q96JJ6 628 aa8.25□□□□□ -1.09
HMGB1P23-201ENST00000518743 ATP1B4Q9UN42 357 aaPredicted RBP8.25□□□□□ -1.09
HMGB1P23-201ENST00000518743 TRAK2O60296 914 aa8.24□□□□□ -1.09
HMGB1P23-201ENST00000518743 PRIM1P49642 420 aaKnown RBP8.24□□□□□ -1.09
HMGB1P23-201ENST00000518743 ARID3AQ99856 593 aa8.24□□□□□ -1.09
HMGB1P23-201ENST00000518743 NPDC1Q9NQX5 325 aaPredicted RBP8.24□□□□□ -1.09
HMGB1P23-201ENST00000518743 TDRD9Q8NDG6 1382 aaKnown RBP8.23□□□□□ -1.09
HMGB1P23-201ENST00000518743 MCM6Q14566 821 aa8.23□□□□□ -1.09
HMGB1P23-201ENST00000518743 BEGAINQ9BUH8 593 aa8.23□□□□□ -1.09
HMGB1P23-201ENST00000518743 MAGI1Q96QZ7 1491 aaPredicted RBP8.23□□□□□ -1.09
HMGB1P23-201ENST00000518743 PCDHGA10Q9Y5H3 936 aa8.22□□□□□ -1.09
HMGB1P23-201ENST00000518743 MAPKBP1O60336 1514 aa8.21□□□□□ -1.1
HMGB1P23-201ENST00000518743 METTL3Q86U44 580 aaKnown RBP8.21□□□□□ -1.1
HMGB1P23-201ENST00000518743 ZNF710Q8N1W2 664 aa8.21□□□□□ -1.1
HMGB1P23-201ENST00000518743 RBM33Q96EV2 1170 aaKnown RBP8.21□□□□□ -1.1
HMGB1P23-201ENST00000518743 REPIN1Q9BWE0 567 aaKnown RBP8.21□□□□□ -1.1
HMGB1P23-201ENST00000518743 CDHR5Q9HBB8 845 aa8.21□□□□□ -1.1
HMGB1P23-201ENST00000518743 FAM217BQ9NTX9 383 aaPredicted RBP8.21□□□□□ -1.1
HMGB1P23-201ENST00000518743 ABCC8Q09428 1581 aa8.2□□□□□ -1.1
HMGB1P23-201ENST00000518743 SPDYE5A6NIY4 337 aa8.2□□□□□ -1.1
HMGB1P23-201ENST00000518743 PDIA4P13667 645 aaKnown RBP8.2□□□□□ -1.1
HMGB1P23-201ENST00000518743 DOK7Q18PE1 504 aa8.2□□□□□ -1.1
HMGB1P23-201ENST00000518743 WWC1Q8IX03 1113 aa8.2□□□□□ -1.1
HMGB1P23-201ENST00000518743 BANK1Q8NDB2 785 aa8.2□□□□□ -1.1
HMGB1P23-201ENST00000518743 PCF11O94913 1555 aaKnown RBP8.19□□□□□ -1.1
HMGB1P23-201ENST00000518743 CEP170Q5SW79 1584 aa8.19□□□□□ -1.1
HMGB1P23-201ENST00000518743 DNMBPQ6XZF7 1577 aa8.19□□□□□ -1.1
HMGB1P23-201ENST00000518743 RANGAP1P46060 587 aaPredicted RBP8.19□□□□□ -1.1
HMGB1P23-201ENST00000518743 PROSER2Q86WR7 435 aaPredicted RBP8.19□□□□□ -1.1
HMGB1P23-201ENST00000518743 RBM46Q8TBY0 533 aaKnown RBP8.19□□□□□ -1.1
HMGB1P23-201ENST00000518743 C1orf115Q9H7X2 142 aa8.19□□□□□ -1.1
HMGB1P23-201ENST00000518743 SERPINA10Q9UK55 444 aa8.19□□□□□ -1.1
HMGB1P23-201ENST00000518743 PCDHGA4Q9Y5G9 962 aa8.19□□□□□ -1.1
HMGB1P23-201ENST00000518743 ARID3CA6NKF2 412 aa8.18□□□□□ -1.1
HMGB1P23-201ENST00000518743 EMP3P54852 163 aa8.18□□□□□ -1.1
HMGB1P23-201ENST00000518743 PRM3Q9NNZ6 103 aa8.18□□□□□ -1.1
HMGB1P23-201ENST00000518743 ZBTB7CA1YPR0 619 aa8.17□□□□□ -1.1
HMGB1P23-201ENST00000518743 TSR1Q2NL82 804 aaKnown RBP8.17□□□□□ -1.1
HMGB1P23-201ENST00000518743 TMEM259Q4ZIN3 620 aa8.17□□□□□ -1.1
HMGB1P23-201ENST00000518743 PXYLP1Q8TE99 480 aa8.17□□□□□ -1.1
HMGB1P23-201ENST00000518743 ZDHHC16Q969W1 377 aa8.17□□□□□ -1.1
HMGB1P23-201ENST00000518743 CLUAP1Q96AJ1 413 aa8.17□□□□□ -1.1
HMGB1P23-201ENST00000518743 CCDC97Q96F63 343 aaPredicted RBP8.17□□□□□ -1.1
HMGB1P23-201ENST00000518743 WIZO95785 1651 aa8.16□□□□□ -1.1
HMGB1P23-201ENST00000518743 CLK2P49760 499 aaKnown RBP8.16□□□□□ -1.1
HMGB1P23-201ENST00000518743 FOSBP53539 338 aa8.16□□□□□ -1.1
HMGB1P23-201ENST00000518743 C6orf132Q5T0Z8 1188 aa8.16□□□□□ -1.1
HMGB1P23-201ENST00000518743 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.16□□□□□ -1.1
HMGB1P23-201ENST00000518743 RAD54L2Q9Y4B4 1467 aa8.16□□□□□ -1.1
HMGB1P23-201ENST00000518743 ADGRG1Q9Y653 693 aa8.16□□□□□ -1.1
HMGB1P23-201ENST00000518743 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.15□□□□□ -1.1
HMGB1P23-201ENST00000518743 RIMBP2O15034 1052 aa8.15□□□□□ -1.1
HMGB1P23-201ENST00000518743 SULF1Q8IWU6 871 aa8.15□□□□□ -1.1
HMGB1P23-201ENST00000518743 CCDC82Q8N4S0 544 aa8.15□□□□□ -1.1
HMGB1P23-201ENST00000518743 POLA1P09884 1462 aaPredicted RBP8.14□□□□□ -1.11
HMGB1P23-201ENST00000518743 GRIN2BQ13224 1484 aa8.14□□□□□ -1.11
HMGB1P23-201ENST00000518743 POTEB3A0JP26 581 aa8.14□□□□□ -1.11
HMGB1P23-201ENST00000518743 FAM205CA6NFA0 338 aa8.14□□□□□ -1.11
HMGB1P23-201ENST00000518743 HSPA2P54652 639 aa8.14□□□□□ -1.11
HMGB1P23-201ENST00000518743 TUSC1Q2TAM9 212 aa8.14□□□□□ -1.11
HMGB1P23-201ENST00000518743 ARSIQ5FYB1 569 aa8.14□□□□□ -1.11
HMGB1P23-201ENST00000518743 MYSM1Q5VVJ2 828 aa8.14□□□□□ -1.11
HMGB1P23-201ENST00000518743 POTEBQ6S5H4 581 aa8.14□□□□□ -1.11
HMGB1P23-201ENST00000518743 PADI6Q6TGC4 694 aa8.14□□□□□ -1.11
HMGB1P23-201ENST00000518743 CDAN1Q8IWY9 1227 aa8.14□□□□□ -1.11
HMGB1P23-201ENST00000518743 KHSRPQ92945 711 aaKnown RBP eCLIP8.14□□□□□ -1.11
HMGB1P23-201ENST00000518743 PHOX2BQ99453 314 aa8.14□□□□□ -1.11
HMGB1P23-201ENST00000518743 PSDA5PKW4 1024 aaPredicted RBP8.13□□□□□ -1.11
HMGB1P23-201ENST00000518743 HOXB1P14653 301 aaPredicted RBP8.13□□□□□ -1.11
HMGB1P23-201ENST00000518743 TTC13Q8NBP0 860 aa8.13□□□□□ -1.11
HMGB1P23-201ENST00000518743 ZSWIM6Q9HCJ5 1215 aa8.13□□□□□ -1.11
HMGB1P23-201ENST00000518743 POLR3EQ9NVU0 708 aa8.13□□□□□ -1.11
HMGB1P23-201ENST00000518743 PRSS12P56730 875 aa8.12□□□□□ -1.11
HMGB1P23-201ENST00000518743 GPR153Q6NV75 609 aa8.12□□□□□ -1.11
HMGB1P23-201ENST00000518743 ZNF454Q8N9F8 522 aa8.12□□□□□ -1.11
HMGB1P23-201ENST00000518743 TBC1D2Q9BYX2 928 aa8.12□□□□□ -1.11
HMGB1P23-201ENST00000518743 PTPRMP28827 1452 aa8.12□□□□□ -1.11
HMGB1P23-201ENST00000518743 SOGA1O94964 1423 aa8.12□□□□□ -1.11
HMGB1P23-201ENST00000518743 GJA5P36382 358 aa8.11□□□□□ -1.11
HMGB1P23-201ENST00000518743 TRIM26Q12899 539 aaPredicted RBP8.11□□□□□ -1.11
HMGB1P23-201ENST00000518743 HS3ST6Q96QI5 342 aa8.11□□□□□ -1.11
HMGB1P23-201ENST00000518743 PPRC1Q5VV67 1664 aaKnown RBP8.11□□□□□ -1.11
HMGB1P23-201ENST00000518743 PBRM1Q86U86 1689 aa8.11□□□□□ -1.11
HMGB1P23-201ENST00000518743 WDR97A6NE52 1622 aa8.11□□□□□ -1.11
HMGB1P23-201ENST00000518743 KIF21BO75037 1637 aa8.11□□□□□ -1.11
HMGB1P23-201ENST00000518743 PDE4CQ08493 712 aa8.1□□□□□ -1.11
HMGB1P23-201ENST00000518743 PPP2R2DQ66LE6 453 aa8.1□□□□□ -1.11
HMGB1P23-201ENST00000518743 FNBP4Q8N3X1 1017 aaPredicted RBP8.1□□□□□ -1.11
HMGB1P23-201ENST00000518743 PROCA1Q8NCQ7 364 aaPredicted RBP8.1□□□□□ -1.11
HMGB1P23-201ENST00000518743 ERBB3P21860 1342 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms