RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 TCP11L2Q8N4U5 519 aa15.74■□□□□ 0.11
USP53-209ENST00000514665 EID1Q9Y6B2 187 aa15.74■□□□□ 0.11
USP53-209ENST00000514665 NGEFQ8N5V2 710 aa15.73■□□□□ 0.11
USP53-209ENST00000514665 PRDM2Q13029 1718 aa15.73■□□□□ 0.11
USP53-209ENST00000514665 CABP2Q9NPB3 220 aa15.73■□□□□ 0.11
USP53-209ENST00000514665 C11orf95C9JLR9 678 aaPredicted RBP15.73■□□□□ 0.11
USP53-209ENST00000514665 NECTIN2Q92692 538 aa15.73■□□□□ 0.11
USP53-209ENST00000514665 SYAP1Q96A49 352 aaPredicted RBP15.73■□□□□ 0.11
USP53-209ENST00000514665 NFKBIBQ15653 356 aa15.72■□□□□ 0.11
USP53-209ENST00000514665 CYB5RLQ6IPT4 315 aa15.72■□□□□ 0.11
USP53-209ENST00000514665 TOP2BQ02880 1626 aa15.71■□□□□ 0.11
USP53-209ENST00000514665 TIAM1Q13009 1591 aa15.71■□□□□ 0.11
USP53-209ENST00000514665 DDX11L8A8MPP1 907 aa15.71■□□□□ 0.11
USP53-209ENST00000514665 PRG4Q92954 1404 aaPredicted RBP15.71■□□□□ 0.1
USP53-209ENST00000514665 GNL2Q13823 731 aaKnown RBP15.7■□□□□ 0.1
USP53-209ENST00000514665 CHMP4AQ9BY43 222 aa15.7■□□□□ 0.1
USP53-209ENST00000514665 NAIPQ13075 1403 aa15.69■□□□□ 0.1
USP53-209ENST00000514665 BCAR3O75815 825 aa15.69■□□□□ 0.1
USP53-209ENST00000514665 GORABQ5T7V8 394 aa15.69■□□□□ 0.1
USP53-209ENST00000514665 SLC12A5Q9H2X9 1139 aa15.69■□□□□ 0.1
USP53-209ENST00000514665 KIAA1107Q9UPP5 1409 aa15.68■□□□□ 0.1
USP53-209ENST00000514665 GPATCH3Q96I76 525 aa15.67■□□□□ 0.1
USP53-209ENST00000514665 CCDC9Q9Y3X0 531 aaKnown RBP15.67■□□□□ 0.1
USP53-209ENST00000514665 UNC13AQ9UPW8 1703 aa15.67■□□□□ 0.1
USP53-209ENST00000514665 EIF2S2P20042 333 aaKnown RBP15.67■□□□□ 0.1
USP53-209ENST00000514665 C22orf23Q9BZE7 217 aa15.67■□□□□ 0.1
USP53-209ENST00000514665 CHMP5Q9NZZ3 219 aa15.67■□□□□ 0.1
USP53-209ENST00000514665 STAC3Q96MF2 364 aa15.66■□□□□ 0.1
USP53-209ENST00000514665 POLA1P09884 1462 aaPredicted RBP15.66■□□□□ 0.1
USP53-209ENST00000514665 HSP90B1P14625 803 aaKnown RBP15.66■□□□□ 0.1
USP53-209ENST00000514665 API5Q9BZZ5 524 aaKnown RBP15.66■□□□□ 0.1
USP53-209ENST00000514665 HDAC5Q9UQL6 1122 aa15.66■□□□□ 0.1
USP53-209ENST00000514665 GRIN2BQ13224 1484 aa15.65■□□□□ 0.1
USP53-209ENST00000514665 KIF16BQ96L93 1317 aa15.64■□□□□ 0.09
USP53-209ENST00000514665 TEFQ10587 303 aa15.64■□□□□ 0.09
USP53-209ENST00000514665 TOPBP1Q92547 1522 aa15.63■□□□□ 0.09
USP53-209ENST00000514665 BACH2Q9BYV9 841 aa15.63■□□□□ 0.09
USP53-209ENST00000514665 C9orf84Q5VXU9 1444 aa15.63■□□□□ 0.09
USP53-209ENST00000514665 EXOSC9Q06265 439 aaKnown RBP15.63■□□□□ 0.09
USP53-209ENST00000514665 FKBP5Q13451 457 aaPredicted RBP15.63■□□□□ 0.09
USP53-209ENST00000514665 TAF7LQ5H9L4 462 aa15.63■□□□□ 0.09
USP53-209ENST00000514665 TSR2Q969E8 191 aaKnown RBP15.63■□□□□ 0.09
USP53-209ENST00000514665 FRAT2O75474 233 aaPredicted RBP15.62■□□□□ 0.09
USP53-209ENST00000514665 HTATSF1O43719 755 aaKnown RBP15.61■□□□□ 0.09
USP53-209ENST00000514665 EFCAB5A4FU69 1503 aa15.61■□□□□ 0.09
USP53-209ENST00000514665 REC8O95072 547 aa15.61■□□□□ 0.09
USP53-209ENST00000514665 GNAI1P63096 354 aa15.61■□□□□ 0.09
USP53-209ENST00000514665 ANO2Q9NQ90 1003 aa15.61■□□□□ 0.09
USP53-209ENST00000514665 PDZRN3Q9UPQ7 1066 aa15.61■□□□□ 0.09
USP53-209ENST00000514665 SKAP1Q86WV1 359 aa15.61■□□□□ 0.09
USP53-209ENST00000514665 TROQ12816 1431 aaPredicted RBP15.6■□□□□ 0.09
USP53-209ENST00000514665 ISY1Q9ULR0 285 aaKnown RBP15.6■□□□□ 0.09
USP53-209ENST00000514665 EHBP1L1Q8N3D4 1523 aa15.59■□□□□ 0.09
USP53-209ENST00000514665 SKOR2Q2VWA4 1001 aaPredicted RBP15.59■□□□□ 0.09
USP53-209ENST00000514665 DAPK1P53355 1430 aa15.59■□□□□ 0.09
USP53-209ENST00000514665 ARHGAP5Q13017 1502 aa15.59■□□□□ 0.09
USP53-209ENST00000514665 SMG6Q86US8 1419 aaKnown RBP15.58■□□□□ 0.09
USP53-209ENST00000514665 PRKAR2BP31323 418 aa15.58■□□□□ 0.08
USP53-209ENST00000514665 DIAPH3Q9NSV4 1193 aa15.58■□□□□ 0.08
USP53-209ENST00000514665 C9orf78Q9NZ63 289 aaPredicted RBP15.58■□□□□ 0.08
USP53-209ENST00000514665 OSCARQ8IYS5 282 aa15.58■□□□□ 0.08
USP53-209ENST00000514665 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.57■□□□□ 0.08
USP53-209ENST00000514665 CDK13Q14004 1512 aaKnown RBP15.57■□□□□ 0.08
USP53-209ENST00000514665 PDE3AQ14432 1141 aa15.57■□□□□ 0.08
USP53-209ENST00000514665 C1orf115Q9H7X2 142 aa15.57■□□□□ 0.08
USP53-209ENST00000514665 TSPYL4Q9UJ04 414 aa15.57■□□□□ 0.08
USP53-209ENST00000514665 NUTM2GQ5VZR2 741 aa15.56■□□□□ 0.08
USP53-209ENST00000514665 CSPP1Q1MSJ5 1256 aa15.56■□□□□ 0.08
USP53-209ENST00000514665 BRPF3Q9ULD4 1205 aa15.56■□□□□ 0.08
USP53-209ENST00000514665 PHF14O94880 888 aa15.55■□□□□ 0.08
USP53-209ENST00000514665 SYNJ2O15056 1496 aa15.55■□□□□ 0.08
USP53-209ENST00000514665 MSH5O43196 834 aa15.55■□□□□ 0.08
USP53-209ENST00000514665 C1orf141Q5JVX7 400 aa15.55■□□□□ 0.08
USP53-209ENST00000514665 TOMM22Q9NS69 142 aa15.55■□□□□ 0.08
USP53-209ENST00000514665 AMER1Q5JTC6 1135 aaPredicted RBP15.54■□□□□ 0.08
USP53-209ENST00000514665 SF3A1Q15459 793 aaKnown RBP15.54■□□□□ 0.08
USP53-209ENST00000514665 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.54■□□□□ 0.08
USP53-209ENST00000514665 ANKRD30BQ9BXX2 1392 aa15.54■□□□□ 0.08
USP53-209ENST00000514665 PRAM1Q96QH2 718 aa15.54■□□□□ 0.08
USP53-209ENST00000514665 AAMPQ13685 434 aa15.53■□□□□ 0.08
USP53-209ENST00000514665 FAM69CQ0P6D2 419 aa15.53■□□□□ 0.08
USP53-209ENST00000514665 INTS3Q68E01 1043 aaKnown RBP15.53■□□□□ 0.08
USP53-209ENST00000514665 DNAJC5BQ9UF47 199 aa15.53■□□□□ 0.08
USP53-209ENST00000514665 HSP90AA2PQ14568 343 aaPredicted RBP15.53■□□□□ 0.08
USP53-209ENST00000514665 C20orf194Q5TEA3 1177 aa15.53■□□□□ 0.08
USP53-209ENST00000514665 MCTP1Q6DN14 999 aa15.52■□□□□ 0.08
USP53-209ENST00000514665 IL27Q8NEV9 243 aa15.52■□□□□ 0.08
USP53-209ENST00000514665 RSPH6AQ9H0K4 717 aa15.52■□□□□ 0.08
USP53-209ENST00000514665 EPRSP07814 1512 aaKnown RBP15.52■□□□□ 0.07
USP53-209ENST00000514665 ERBINQ96RT1 1412 aa15.52■□□□□ 0.07
USP53-209ENST00000514665 H3BQV1 296 aa15.52■□□□□ 0.07
USP53-209ENST00000514665 IFFO2Q5TF58 517 aa15.52■□□□□ 0.07
USP53-209ENST00000514665 SCAPERQ9BY12 1400 aa15.51■□□□□ 0.07
USP53-209ENST00000514665 NOB1Q9ULX3 412 aaKnown RBP15.51■□□□□ 0.07
USP53-209ENST00000514665 FAM184AQ8NB25 1140 aa15.51■□□□□ 0.07
USP53-209ENST00000514665 ATP6V1DQ9Y5K8 247 aa15.51■□□□□ 0.07
USP53-209ENST00000514665 IFIT2P09913 472 aaKnown RBP15.51■□□□□ 0.07
USP53-209ENST00000514665 ZKSCAN1P17029 563 aaPredicted RBP15.51■□□□□ 0.07
USP53-209ENST00000514665 PCF11O94913 1555 aaKnown RBP15.5■□□□□ 0.07
USP53-209ENST00000514665 NEXNQ0ZGT2 675 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms