RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 CCDC9Q9Y3X0 531 aaKnown RBP16.38■□□□□ 0.21
TCOF1-213ENST00000514442 NBPF1Q3BBV0 1214 aa16.37■□□□□ 0.21
TCOF1-213ENST00000514442 LMOD3Q0VAK6 560 aa16.37■□□□□ 0.21
TCOF1-213ENST00000514442 PMFBP1Q8TBY8 1022 aa16.37■□□□□ 0.21
TCOF1-213ENST00000514442 CABP2Q9NPB3 220 aa16.37■□□□□ 0.21
TCOF1-213ENST00000514442 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.36■□□□□ 0.21
TCOF1-213ENST00000514442 MAP7D2Q96T17 732 aa16.36■□□□□ 0.21
TCOF1-213ENST00000514442 MRE11P49959 708 aa16.36■□□□□ 0.21
TCOF1-213ENST00000514442 NBPF8Q3BBV2 869 aa16.36■□□□□ 0.21
TCOF1-213ENST00000514442 FAM13BQ9NYF5 915 aa16.36■□□□□ 0.21
TCOF1-213ENST00000514442 MIA2Q96PC5 1412 aa16.35■□□□□ 0.21
TCOF1-213ENST00000514442 SCAPERQ9BY12 1400 aa16.35■□□□□ 0.21
TCOF1-213ENST00000514442 LAMC3Q9Y6N6 1575 aa16.35■□□□□ 0.21
TCOF1-213ENST00000514442 PCF11O94913 1555 aaKnown RBP16.35■□□□□ 0.21
TCOF1-213ENST00000514442 MFAP1P55081 439 aaKnown RBP16.34■□□□□ 0.21
TCOF1-213ENST00000514442 ZRSR1Q15695 479 aaKnown RBP16.34■□□□□ 0.21
TCOF1-213ENST00000514442 EPRSP07814 1512 aaKnown RBP16.34■□□□□ 0.21
TCOF1-213ENST00000514442 MCCP23508 829 aa16.34■□□□□ 0.21
TCOF1-213ENST00000514442 HFM1A2PYH4 1435 aa16.34■□□□□ 0.21
TCOF1-213ENST00000514442 KIAA0586Q9BVV6 1533 aa16.34■□□□□ 0.21
TCOF1-213ENST00000514442 DAPK1P53355 1430 aa16.34■□□□□ 0.21
TCOF1-213ENST00000514442 GGNBP2Q9H3C7 697 aa16.33■□□□□ 0.21
TCOF1-213ENST00000514442 UNC13AQ9UPW8 1703 aa16.33■□□□□ 0.21
TCOF1-213ENST00000514442 SKOR2Q2VWA4 1001 aaPredicted RBP16.33■□□□□ 0.21
TCOF1-213ENST00000514442 CHMP3Q9Y3E7 222 aa16.33■□□□□ 0.2
TCOF1-213ENST00000514442 E9PSI1 815 aa16.32■□□□□ 0.2
TCOF1-213ENST00000514442 KIAA2012Q0VF49 1180 aa16.32■□□□□ 0.2
TCOF1-213ENST00000514442 IQGAP2Q13576 1575 aa16.32■□□□□ 0.2
TCOF1-213ENST00000514442 SUPT6HQ7KZ85 1726 aaKnown RBP16.32■□□□□ 0.2
TCOF1-213ENST00000514442 DIAPH1O60610 1272 aaKnown RBP16.32■□□□□ 0.2
TCOF1-213ENST00000514442 PLCB2Q00722 1185 aa16.32■□□□□ 0.2
TCOF1-213ENST00000514442 RAPGEF3O95398 923 aa16.31■□□□□ 0.2
TCOF1-213ENST00000514442 KIAA1107Q9UPP5 1409 aa16.31■□□□□ 0.2
TCOF1-213ENST00000514442 COG6Q9Y2V7 657 aa16.31■□□□□ 0.2
TCOF1-213ENST00000514442 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.3■□□□□ 0.2
TCOF1-213ENST00000514442 URB2Q14146 1524 aaKnown RBP16.29■□□□□ 0.2
TCOF1-213ENST00000514442 MTERF4Q7Z6M4 381 aaKnown RBP16.29■□□□□ 0.2
TCOF1-213ENST00000514442 CHMP5Q9NZZ3 219 aa16.29■□□□□ 0.2
TCOF1-213ENST00000514442 PLB1Q6P1J6 1458 aa16.29■□□□□ 0.2
TCOF1-213ENST00000514442 KIAA1211Q6ZU35 1233 aa16.29■□□□□ 0.2
TCOF1-213ENST00000514442 TRIM6-TRIM34B2RNG4 842 aa16.28■□□□□ 0.2
TCOF1-213ENST00000514442 RIPK4P57078 832 aa16.28■□□□□ 0.2
TCOF1-213ENST00000514442 HMOX1P09601 288 aa16.28■□□□□ 0.2
TCOF1-213ENST00000514442 ARHGEF11O15085 1522 aa16.28■□□□□ 0.2
TCOF1-213ENST00000514442 NUTM2GQ5VZR2 741 aa16.27■□□□□ 0.2
TCOF1-213ENST00000514442 HMMRO75330 724 aa16.27■□□□□ 0.19
TCOF1-213ENST00000514442 STAC3Q96MF2 364 aa16.27■□□□□ 0.19
TCOF1-213ENST00000514442 PEG3Q9GZU2 1588 aa16.27■□□□□ 0.19
TCOF1-213ENST00000514442 CCDC184Q52MB2 194 aa16.26■□□□□ 0.19
TCOF1-213ENST00000514442 ZKSCAN2Q63HK3 967 aa16.26■□□□□ 0.19
TCOF1-213ENST00000514442 NECTIN2Q92692 538 aa16.26■□□□□ 0.19
TCOF1-213ENST00000514442 TULP1O00294 542 aaPredicted RBP16.25■□□□□ 0.19
TCOF1-213ENST00000514442 PSME1Q06323 249 aa16.25■□□□□ 0.19
TCOF1-213ENST00000514442 CSPP1Q1MSJ5 1256 aa16.25■□□□□ 0.19
TCOF1-213ENST00000514442 CUL7Q14999 1698 aa16.25■□□□□ 0.19
TCOF1-213ENST00000514442 NAIPQ13075 1403 aa16.24■□□□□ 0.19
TCOF1-213ENST00000514442 ZNF608Q9ULD9 1512 aaPredicted RBP16.24■□□□□ 0.19
TCOF1-213ENST00000514442 CFAP44Q96MT7 982 aa16.24■□□□□ 0.19
TCOF1-213ENST00000514442 PLEKHH2Q8IVE3 1493 aa16.24■□□□□ 0.19
TCOF1-213ENST00000514442 C1orf141Q5JVX7 400 aa16.24■□□□□ 0.19
TCOF1-213ENST00000514442 CHMP4AQ9BY43 222 aa16.24■□□□□ 0.19
TCOF1-213ENST00000514442 ADAMTS8Q9UP79 889 aa16.24■□□□□ 0.19
TCOF1-213ENST00000514442 RUNDC1Q96C34 613 aa16.23■□□□□ 0.19
TCOF1-213ENST00000514442 EIF2S2P20042 333 aaKnown RBP16.23■□□□□ 0.19
TCOF1-213ENST00000514442 GRIN2AQ12879 1464 aa16.23■□□□□ 0.19
TCOF1-213ENST00000514442 GOLGA6L4A6NEF3 574 aa16.22■□□□□ 0.19
TCOF1-213ENST00000514442 TRAK2O60296 914 aa16.22■□□□□ 0.19
TCOF1-213ENST00000514442 TEFQ10587 303 aa16.22■□□□□ 0.19
TCOF1-213ENST00000514442 TAF7LQ5H9L4 462 aa16.22■□□□□ 0.19
TCOF1-213ENST00000514442 GORABQ5T7V8 394 aa16.22■□□□□ 0.19
TCOF1-213ENST00000514442 PRAM1Q96QH2 718 aa16.22■□□□□ 0.19
TCOF1-213ENST00000514442 FOXD4L1Q9NU39 408 aa16.22■□□□□ 0.19
TCOF1-213ENST00000514442 MTHFSP49914 203 aa16.21■□□□□ 0.19
TCOF1-213ENST00000514442 NOL8Q76FK4 1167 aaKnown RBP16.21■□□□□ 0.19
TCOF1-213ENST00000514442 R3HCC1Q9Y3T6 440 aaKnown RBP16.21■□□□□ 0.19
TCOF1-213ENST00000514442 NGEFQ8N5V2 710 aa16.21■□□□□ 0.19
TCOF1-213ENST00000514442 ANKRD45Q5TZF3 282 aa16.2■□□□□ 0.18
TCOF1-213ENST00000514442 MAGI1Q96QZ7 1491 aaPredicted RBP16.2■□□□□ 0.18
TCOF1-213ENST00000514442 ESPNB1AK53 854 aa16.2■□□□□ 0.18
TCOF1-213ENST00000514442 DDX49Q9Y6V7 483 aaKnown RBP16.2■□□□□ 0.18
TCOF1-213ENST00000514442 SLC12A5Q9H2X9 1139 aa16.2■□□□□ 0.18
TCOF1-213ENST00000514442 TXNDC2Q86VQ3 553 aa16.19■□□□□ 0.18
TCOF1-213ENST00000514442 PPP2R1AP30153 589 aa16.19■□□□□ 0.18
TCOF1-213ENST00000514442 RBM10P98175 930 aaKnown RBP16.19■□□□□ 0.18
TCOF1-213ENST00000514442 CDCA7LQ96GN5 454 aa16.19■□□□□ 0.18
TCOF1-213ENST00000514442 EVA1CP58658 441 aa16.19■□□□□ 0.18
TCOF1-213ENST00000514442 ISY1Q9ULR0 285 aaKnown RBP16.18■□□□□ 0.18
TCOF1-213ENST00000514442 CAMSAP2Q08AD1 1489 aa16.18■□□□□ 0.18
TCOF1-213ENST00000514442 SYAP1Q96A49 352 aaPredicted RBP16.18■□□□□ 0.18
TCOF1-213ENST00000514442 PDCL3Q9H2J4 239 aa16.18■□□□□ 0.18
TCOF1-213ENST00000514442 BIVM-ERCC5R4GMW8 1640 aa16.18■□□□□ 0.18
TCOF1-213ENST00000514442 BRD4O60885 1362 aaPredicted RBP16.17■□□□□ 0.18
TCOF1-213ENST00000514442 GPATCH3Q96I76 525 aa16.17■□□□□ 0.18
TCOF1-213ENST00000514442 PTPN23Q9H3S7 1636 aa16.17■□□□□ 0.18
TCOF1-213ENST00000514442 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.16■□□□□ 0.18
TCOF1-213ENST00000514442 GRPEL1Q9HAV7 217 aa16.16■□□□□ 0.18
TCOF1-213ENST00000514442 ERBINQ96RT1 1412 aa16.16■□□□□ 0.18
TCOF1-213ENST00000514442 TNNT3P45378 269 aaPredicted RBP16.15■□□□□ 0.18
TCOF1-213ENST00000514442 ABCC5O15440 1437 aa16.15■□□□□ 0.18
TCOF1-213ENST00000514442 NLRP6P59044 892 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms