RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 COG6Q9Y2V7 657 aa13.97□□□□□ -0.17
TCOF1-211ENST00000513346 BRD4O60885 1362 aaPredicted RBP13.97□□□□□ -0.17
TCOF1-211ENST00000513346 VGFO15240 615 aaPredicted RBP13.97□□□□□ -0.17
TCOF1-211ENST00000513346 NGDNQ8NEJ9 315 aaKnown RBP13.96□□□□□ -0.17
TCOF1-211ENST00000513346 TNNT3P45378 269 aaPredicted RBP13.95□□□□□ -0.18
TCOF1-211ENST00000513346 TIAM1Q13009 1591 aa13.95□□□□□ -0.18
TCOF1-211ENST00000513346 URB2Q14146 1524 aaKnown RBP13.94□□□□□ -0.18
TCOF1-211ENST00000513346 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.94□□□□□ -0.18
TCOF1-211ENST00000513346 PHF14O94880 888 aa13.94□□□□□ -0.18
TCOF1-211ENST00000513346 SMC4Q9NTJ3 1288 aa13.94□□□□□ -0.18
TCOF1-211ENST00000513346 ISY1Q9ULR0 285 aaKnown RBP13.94□□□□□ -0.18
TCOF1-211ENST00000513346 R3HCC1Q9Y3T6 440 aaKnown RBP13.94□□□□□ -0.18
TCOF1-211ENST00000513346 A0A0U1RQG5 324 aaPredicted RBP13.93□□□□□ -0.18
TCOF1-211ENST00000513346 PNISRQ8TF01 805 aaKnown RBP13.93□□□□□ -0.18
TCOF1-211ENST00000513346 C11orf95C9JLR9 678 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-211ENST00000513346 CDCA7LQ96GN5 454 aa13.92□□□□□ -0.18
TCOF1-211ENST00000513346 POGZQ7Z3K3 1410 aa13.92□□□□□ -0.18
TCOF1-211ENST00000513346 C22orf23Q9BZE7 217 aa13.92□□□□□ -0.18
TCOF1-211ENST00000513346 ESPNB1AK53 854 aa13.92□□□□□ -0.18
TCOF1-211ENST00000513346 NASPP49321 788 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-211ENST00000513346 ST18O60284 1047 aa13.91□□□□□ -0.18
TCOF1-211ENST00000513346 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.9□□□□□ -0.18
TCOF1-211ENST00000513346 KCNJ4P48050 445 aa13.9□□□□□ -0.18
TCOF1-211ENST00000513346 NGEFQ8N5V2 710 aa13.9□□□□□ -0.18
TCOF1-211ENST00000513346 ZNF771Q7L3S4 317 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-211ENST00000513346 PLEKHH2Q8IVE3 1493 aa13.89□□□□□ -0.19
TCOF1-211ENST00000513346 HFM1A2PYH4 1435 aa13.89□□□□□ -0.19
TCOF1-211ENST00000513346 AAMPQ13685 434 aa13.89□□□□□ -0.19
TCOF1-211ENST00000513346 EHBP1L1Q8N3D4 1523 aa13.88□□□□□ -0.19
TCOF1-211ENST00000513346 APAF1O14727 1248 aa13.88□□□□□ -0.19
TCOF1-211ENST00000513346 AMPHP49418 695 aa13.88□□□□□ -0.19
TCOF1-211ENST00000513346 FGD1P98174 961 aa13.88□□□□□ -0.19
TCOF1-211ENST00000513346 CCDC173Q0VFZ6 552 aa13.88□□□□□ -0.19
TCOF1-211ENST00000513346 GRPEL1Q9HAV7 217 aa13.88□□□□□ -0.19
TCOF1-211ENST00000513346 MIA2Q96PC5 1412 aa13.87□□□□□ -0.19
TCOF1-211ENST00000513346 ARHGAP5Q13017 1502 aa13.87□□□□□ -0.19
TCOF1-211ENST00000513346 RBM10P98175 930 aaKnown RBP13.87□□□□□ -0.19
TCOF1-211ENST00000513346 TROQ12816 1431 aaPredicted RBP13.87□□□□□ -0.19
TCOF1-211ENST00000513346 ZKSCAN2Q63HK3 967 aa13.87□□□□□ -0.19
TCOF1-211ENST00000513346 ZMYND15Q9H091 742 aa13.87□□□□□ -0.19
TCOF1-211ENST00000513346 GRIN2AQ12879 1464 aa13.87□□□□□ -0.19
TCOF1-211ENST00000513346 BCL2L13Q9BXK5 485 aa13.86□□□□□ -0.19
TCOF1-211ENST00000513346 KIAA1211Q6ZU35 1233 aa13.86□□□□□ -0.19
TCOF1-211ENST00000513346 APBB1O00213 710 aa13.86□□□□□ -0.19
TCOF1-211ENST00000513346 MCM4P33991 863 aa13.86□□□□□ -0.19
TCOF1-211ENST00000513346 STAC3Q96MF2 364 aa13.86□□□□□ -0.19
TCOF1-211ENST00000513346 NBPF8Q3BBV2 869 aa13.86□□□□□ -0.19
TCOF1-211ENST00000513346 CHMP4AQ9BY43 222 aa13.86□□□□□ -0.19
TCOF1-211ENST00000513346 RRP7AQ9Y3A4 280 aaKnown RBP13.86□□□□□ -0.19
TCOF1-211ENST00000513346 ZNF330Q9Y3S2 320 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-211ENST00000513346 LTV1Q96GA3 475 aaPredicted RBP13.85□□□□□ -0.19
TCOF1-211ENST00000513346 NUCB2P80303 420 aa13.84□□□□□ -0.19
TCOF1-211ENST00000513346 STK31Q9BXU1 1019 aa13.84□□□□□ -0.19
TCOF1-211ENST00000513346 EVC2Q86UK5 1308 aa13.84□□□□□ -0.19
TCOF1-211ENST00000513346 CCDC9Q9Y3X0 531 aaKnown RBP13.84□□□□□ -0.19
TCOF1-211ENST00000513346 FOXD4L5Q5VV16 416 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-211ENST00000513346 FOXD4L4Q8WXT5 416 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-211ENST00000513346 CCDC39Q9UFE4 941 aa13.84□□□□□ -0.19
TCOF1-211ENST00000513346 CDK13Q14004 1512 aaKnown RBP13.84□□□□□ -0.19
TCOF1-211ENST00000513346 MINK1Q8N4C8 1332 aaPredicted RBP13.83□□□□□ -0.2
TCOF1-211ENST00000513346 ANKRD45Q5TZF3 282 aa13.82□□□□□ -0.2
TCOF1-211ENST00000513346 TAOK2Q9UL54 1235 aa13.82□□□□□ -0.2
TCOF1-211ENST00000513346 EPRSP07814 1512 aaKnown RBP13.82□□□□□ -0.2
TCOF1-211ENST00000513346 PCF11O94913 1555 aaKnown RBP13.82□□□□□ -0.2
TCOF1-211ENST00000513346 KIF16BQ96L93 1317 aa13.82□□□□□ -0.2
TCOF1-211ENST00000513346 C9orf84Q5VXU9 1444 aa13.82□□□□□ -0.2
TCOF1-211ENST00000513346 NAIPQ13075 1403 aa13.82□□□□□ -0.2
TCOF1-211ENST00000513346 THEMISQ8N1K5 641 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-211ENST00000513346 LMOD3Q0VAK6 560 aa13.81□□□□□ -0.2
TCOF1-211ENST00000513346 PDCL3Q9H2J4 239 aa13.81□□□□□ -0.2
TCOF1-211ENST00000513346 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.81□□□□□ -0.2
TCOF1-211ENST00000513346 MCTP1Q6DN14 999 aa13.81□□□□□ -0.2
TCOF1-211ENST00000513346 PANK1Q8TE04 598 aa13.81□□□□□ -0.2
TCOF1-211ENST00000513346 NAP1L2Q9ULW6 460 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-211ENST00000513346 DDX19BQ9UMR2 479 aa13.81□□□□□ -0.2
TCOF1-211ENST00000513346 HECW1Q76N89 1606 aa13.81□□□□□ -0.2
TCOF1-211ENST00000513346 ADAMTS8Q9UP79 889 aa13.81□□□□□ -0.2
TCOF1-211ENST00000513346 NBPF1Q3BBV0 1214 aa13.8□□□□□ -0.2
TCOF1-211ENST00000513346 DZIP1LQ8IYY4 767 aaKnown RBP13.8□□□□□ -0.2
TCOF1-211ENST00000513346 COG3Q96JB2 828 aa13.79□□□□□ -0.2
TCOF1-211ENST00000513346 IQGAP2Q13576 1575 aa13.79□□□□□ -0.2
TCOF1-211ENST00000513346 DAPK1P53355 1430 aa13.79□□□□□ -0.2
TCOF1-211ENST00000513346 CD109Q6YHK3 1445 aa13.79□□□□□ -0.2
TCOF1-211ENST00000513346 PDE3AQ14432 1141 aa13.79□□□□□ -0.2
TCOF1-211ENST00000513346 KIAA1107Q9UPP5 1409 aa13.79□□□□□ -0.2
TCOF1-211ENST00000513346 HTATSF1O43719 755 aaKnown RBP13.78□□□□□ -0.2
TCOF1-211ENST00000513346 HMGN5P82970 282 aaKnown RBP13.78□□□□□ -0.2
TCOF1-211ENST00000513346 NOL8Q76FK4 1167 aaKnown RBP13.78□□□□□ -0.2
TCOF1-211ENST00000513346 DIAPH3Q9NSV4 1193 aa13.78□□□□□ -0.2
TCOF1-211ENST00000513346 SCAPERQ9BY12 1400 aa13.78□□□□□ -0.2
TCOF1-211ENST00000513346 ATF3P18847 181 aa13.78□□□□□ -0.2
TCOF1-211ENST00000513346 PDZRN3Q9UPQ7 1066 aa13.77□□□□□ -0.2
TCOF1-211ENST00000513346 CFAP70Q5T0N1 1121 aa13.77□□□□□ -0.21
TCOF1-211ENST00000513346 ZSCAN30Q86W11 494 aa13.77□□□□□ -0.21
TCOF1-211ENST00000513346 CUL7Q14999 1698 aa13.77□□□□□ -0.21
TCOF1-211ENST00000513346 SUPT6HQ7KZ85 1726 aaKnown RBP13.77□□□□□ -0.21
TCOF1-211ENST00000513346 TMEM132EQ6IEE7 984 aa13.77□□□□□ -0.21
TCOF1-211ENST00000513346 BIVM-ERCC5R4GMW8 1640 aa13.76□□□□□ -0.21
TCOF1-211ENST00000513346 CAVIN1Q6NZI2 390 aaKnown RBP13.76□□□□□ -0.21
TCOF1-211ENST00000513346 CLCN1P35523 988 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms