RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 SLAIN2Q9P270 581 aa30.08■■■□□ 2.41
HMGCS1-206ENST00000511774 MSH6P52701 1360 aa30.07■■■□□ 2.4
HMGCS1-206ENST00000511774 CHIC2Q9UKJ5 165 aa30.07■■■□□ 2.4
HMGCS1-206ENST00000511774 JCADQ9P266 1359 aa30.05■■■□□ 2.4
HMGCS1-206ENST00000511774 LRP6O75581 1613 aa30.05■■■□□ 2.4
HMGCS1-206ENST00000511774 ZFYVE9O95405 1425 aa30.05■■■□□ 2.4
HMGCS1-206ENST00000511774 FGD6Q6ZV73 1430 aa30.02■■■□□ 2.4
HMGCS1-206ENST00000511774 ANKRD30AQ9BXX3 1397 aa30■■■□□ 2.39
HMGCS1-206ENST00000511774 GCC2Q8IWJ2 1684 aa29.99■■■□□ 2.39
HMGCS1-206ENST00000511774 BCANQ96GW7 911 aa29.99■■■□□ 2.39
HMGCS1-206ENST00000511774 PLEKHG1Q9ULL1 1385 aa29.98■■■□□ 2.39
HMGCS1-206ENST00000511774 SLC52A1Q9NWF4 448 aa29.97■■■□□ 2.39
HMGCS1-206ENST00000511774 TMEM131LA2VDJ0 1609 aa29.96■■■□□ 2.39
HMGCS1-206ENST00000511774 RIMS2Q9UQ26 1411 aa29.96■■■□□ 2.39
HMGCS1-206ENST00000511774 UPF1Q92900 1129 aaKnown RBP eCLIP29.92■■■□□ 2.38
HMGCS1-206ENST00000511774 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.92■■■□□ 2.38
HMGCS1-206ENST00000511774 ADGRL2O95490 1459 aa29.91■■■□□ 2.38
HMGCS1-206ENST00000511774 AHDC1Q5TGY3 1603 aaPredicted RBP29.9■■■□□ 2.38
HMGCS1-206ENST00000511774 RPRD2Q5VT52 1461 aaKnown RBP29.9■■■□□ 2.38
HMGCS1-206ENST00000511774 SHPRHQ149N8 1683 aa29.89■■■□□ 2.38
HMGCS1-206ENST00000511774 ADAMTS13Q76LX8 1427 aa29.88■■■□□ 2.37
HMGCS1-206ENST00000511774 TRIM52Q96A61 297 aa29.87■■■□□ 2.37
HMGCS1-206ENST00000511774 TBX22Q9Y458 520 aa29.87■■■□□ 2.37
HMGCS1-206ENST00000511774 SPATA31A6Q5VVP1 1343 aa29.87■■■□□ 2.37
HMGCS1-206ENST00000511774 PPP1R15AO75807 674 aaPredicted RBP29.86■■■□□ 2.37
HMGCS1-206ENST00000511774 NCOA3Q9Y6Q9 1424 aa29.86■■■□□ 2.37
HMGCS1-206ENST00000511774 NUTM2DQ5VT03 806 aaPredicted RBP29.84■■■□□ 2.37
HMGCS1-206ENST00000511774 DIP2AQ14689 1571 aa29.84■■■□□ 2.37
HMGCS1-206ENST00000511774 ANKRD50Q9ULJ7 1429 aa29.82■■■□□ 2.36
HMGCS1-206ENST00000511774 MEX3CQ5U5Q3 659 aaKnown RBP29.82■■■□□ 2.36
HMGCS1-206ENST00000511774 ZNF772Q68DY9 489 aaPredicted RBP29.8■■■□□ 2.36
HMGCS1-206ENST00000511774 C14orf37Q86TY3 774 aa29.8■■■□□ 2.36
HMGCS1-206ENST00000511774 C19orf44Q9H6X5 657 aa29.78■■■□□ 2.36
HMGCS1-206ENST00000511774 E9PCH4 1651 aa29.78■■■□□ 2.36
HMGCS1-206ENST00000511774 PTPRUQ92729 1446 aa29.78■■■□□ 2.36
HMGCS1-206ENST00000511774 CADPS2Q86UW7 1296 aa29.77■■■□□ 2.36
HMGCS1-206ENST00000511774 BRINP3Q76B58 766 aa29.76■■■□□ 2.35
HMGCS1-206ENST00000511774 UNC13BO14795 1591 aa29.75■■■□□ 2.35
HMGCS1-206ENST00000511774 CHGAP10645 457 aaKnown RBP29.75■■■□□ 2.35
HMGCS1-206ENST00000511774 HDGFP51858 240 aaKnown RBP29.74■■■□□ 2.35
HMGCS1-206ENST00000511774 APLP2Q06481 763 aa29.74■■■□□ 2.35
HMGCS1-206ENST00000511774 ATF3P18847 181 aa29.73■■■□□ 2.35
HMGCS1-206ENST00000511774 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.72■■■□□ 2.35
HMGCS1-206ENST00000511774 PIK3R4Q99570 1358 aa29.72■■■□□ 2.35
HMGCS1-206ENST00000511774 SRCAPQ6ZRS2 3230 aa29.71■■■□□ 2.35
HMGCS1-206ENST00000511774 NUTM2BA6NNL0 878 aaPredicted RBP29.71■■■□□ 2.35
HMGCS1-206ENST00000511774 NUTM2EB1AL46 878 aaPredicted RBP29.71■■■□□ 2.35
HMGCS1-206ENST00000511774 RXRBP28702 533 aa29.71■■■□□ 2.35
HMGCS1-206ENST00000511774 NUTM2AQ8IVF1 878 aaPredicted RBP29.71■■■□□ 2.35
HMGCS1-206ENST00000511774 CDK12Q9NYV4 1490 aaPredicted RBP29.69■■■□□ 2.34
HMGCS1-206ENST00000511774 FAM50AQ14320 339 aaKnown RBP29.69■■■□□ 2.34
HMGCS1-206ENST00000511774 AMOTL2Q9Y2J4 779 aa29.69■■■□□ 2.34
HMGCS1-206ENST00000511774 TRPM2O94759 1503 aa29.69■■■□□ 2.34
HMGCS1-206ENST00000511774 ASXL1Q8IXJ9 1541 aa29.68■■■□□ 2.34
HMGCS1-206ENST00000511774 NRXN3Q9Y4C0 1643 aa29.67■■■□□ 2.34
HMGCS1-206ENST00000511774 XRN1Q8IZH2 1706 aaKnown RBP29.67■■■□□ 2.34
HMGCS1-206ENST00000511774 AFF2P51816 1311 aa29.67■■■□□ 2.34
HMGCS1-206ENST00000511774 NHSL1Q5SYE7 1610 aa29.67■■■□□ 2.34
HMGCS1-206ENST00000511774 MST1RQ04912 1400 aa29.63■■■□□ 2.33
HMGCS1-206ENST00000511774 SETD5Q9C0A6 1442 aa29.63■■■□□ 2.33
HMGCS1-206ENST00000511774 IQGAP3Q86VI3 1631 aa29.63■■■□□ 2.33
HMGCS1-206ENST00000511774 DCCP43146 1447 aa29.62■■■□□ 2.33
HMGCS1-206ENST00000511774 RGS12O14924 1447 aa29.61■■■□□ 2.33
HMGCS1-206ENST00000511774 DDX17Q92841 729 aaKnown RBP29.6■■■□□ 2.33
HMGCS1-206ENST00000511774 SETBP1Q9Y6X0 1596 aa29.56■■■□□ 2.32
HMGCS1-206ENST00000511774 METP08581 1390 aa29.54■■■□□ 2.32
HMGCS1-206ENST00000511774 PNPLA6Q8IY17 1366 aa29.53■■■□□ 2.32
HMGCS1-206ENST00000511774 NALCNQ8IZF0 1738 aa29.52■■■□□ 2.32
HMGCS1-206ENST00000511774 C8orf37Q96NL8 207 aa29.52■■■□□ 2.32
HMGCS1-206ENST00000511774 QTRT2Q9H974 415 aaKnown RBP29.51■■■□□ 2.31
HMGCS1-206ENST00000511774 LRRC59Q96AG4 307 aaKnown RBP29.49■■■□□ 2.31
HMGCS1-206ENST00000511774 RBM6P78332 1123 aaKnown RBP29.48■■■□□ 2.31
HMGCS1-206ENST00000511774 NUP155O75694 1391 aa29.48■■■□□ 2.31
HMGCS1-206ENST00000511774 ADGRL3Q9HAR2 1447 aa29.47■■■□□ 2.31
HMGCS1-206ENST00000511774 ROCK1Q13464 1354 aa29.46■■■□□ 2.31
HMGCS1-206ENST00000511774 SPHKAPQ2M3C7 1700 aa29.45■■■□□ 2.31
HMGCS1-206ENST00000511774 LAMC1P11047 1609 aa29.42■■■□□ 2.3
HMGCS1-206ENST00000511774 ADAMTS2O95450 1211 aa29.4■■■□□ 2.3
HMGCS1-206ENST00000511774 C1orf167Q5SNV9 1468 aa29.4■■■□□ 2.3
HMGCS1-206ENST00000511774 EP400Q96L91 3159 aa29.39■■■□□ 2.3
HMGCS1-206ENST00000511774 NEXMIFQ5QGS0 1516 aa29.39■■■□□ 2.3
HMGCS1-206ENST00000511774 NGLY1Q96IV0 654 aa29.37■■■□□ 2.29
HMGCS1-206ENST00000511774 CLTCL1P53675 1640 aa29.36■■■□□ 2.29
HMGCS1-206ENST00000511774 ZNF326Q5BKZ1 582 aaKnown RBP29.36■■■□□ 2.29
HMGCS1-206ENST00000511774 ORAI2Q96SN7 254 aa29.33■■■□□ 2.29
HMGCS1-206ENST00000511774 SOS2Q07890 1332 aaPredicted RBP29.31■■■□□ 2.28
HMGCS1-206ENST00000511774 ATAD2Q6PL18 1390 aa29.3■■■□□ 2.28
HMGCS1-206ENST00000511774 ITGAEP38570 1179 aa29.29■■■□□ 2.28
HMGCS1-206ENST00000511774 USP21Q9UK80 565 aa29.29■■■□□ 2.28
HMGCS1-206ENST00000511774 ROBO2Q9HCK4 1378 aa29.28■■■□□ 2.28
HMGCS1-206ENST00000511774 ATRNO75882 1429 aa29.27■■■□□ 2.28
HMGCS1-206ENST00000511774 FNBP4Q8N3X1 1017 aaPredicted RBP29.26■■■□□ 2.27
HMGCS1-206ENST00000511774 COL22A1Q8NFW1 1626 aaPredicted RBP29.26■■■□□ 2.27
HMGCS1-206ENST00000511774 PTCH1Q13635 1447 aa29.26■■■□□ 2.27
HMGCS1-206ENST00000511774 TRPC5Q9UL62 973 aaPredicted RBP29.24■■■□□ 2.27
HMGCS1-206ENST00000511774 KIF1BO60333 1816 aa29.23■■■□□ 2.27
HMGCS1-206ENST00000511774 MYOM2P54296 1465 aa29.21■■■□□ 2.27
HMGCS1-206ENST00000511774 BCL9LQ86UU0 1499 aa29.18■■■□□ 2.26
HMGCS1-206ENST00000511774 PRAG1Q86YV5 1406 aa29.18■■■□□ 2.26
HMGCS1-206ENST00000511774 MARF1Q9Y4F3 1742 aaKnown RBP29.17■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms