RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 BRD4O60885 1362 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-207ENST00000508466 PKP1Q13835 747 aa9.11□□□□□ -0.95
LIMCH1-207ENST00000508466 KIF27Q86VH2 1401 aa9.1□□□□□ -0.95
LIMCH1-207ENST00000508466 U2AF2P26368 475 aaKnown RBP eCLIP9.1□□□□□ -0.95
LIMCH1-207ENST00000508466 DDX11L8A8MPP1 907 aa9.09□□□□□ -0.95
LIMCH1-207ENST00000508466 KDM6BO15054 1643 aa9.09□□□□□ -0.95
LIMCH1-207ENST00000508466 DTNBO60941 627 aa9.09□□□□□ -0.95
LIMCH1-207ENST00000508466 CCDC173Q0VFZ6 552 aa9.09□□□□□ -0.95
LIMCH1-207ENST00000508466 ZNF771Q7L3S4 317 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-207ENST00000508466 CDK11BP21127 795 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-207ENST00000508466 ZNF710Q8N1W2 664 aa9.08□□□□□ -0.96
LIMCH1-207ENST00000508466 CFTRP13569 1480 aa9.08□□□□□ -0.96
LIMCH1-207ENST00000508466 IGF1RP08069 1367 aa9.08□□□□□ -0.96
LIMCH1-207ENST00000508466 CARMIL1Q5VZK9 1371 aa9.08□□□□□ -0.96
LIMCH1-207ENST00000508466 CCDC94Q9BW85 323 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-207ENST00000508466 PRPF40AO75400 957 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-207ENST00000508466 KCNJ4P48050 445 aa9.08□□□□□ -0.96
LIMCH1-207ENST00000508466 ZNF692Q9BU19 519 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-207ENST00000508466 MYOM3Q5VTT5 1437 aa9.07□□□□□ -0.96
LIMCH1-207ENST00000508466 PTPN23Q9H3S7 1636 aa9.07□□□□□ -0.96
LIMCH1-207ENST00000508466 NSFL1CQ9UNZ2 370 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-207ENST00000508466 ANKRD30BQ9BXX2 1392 aa9.07□□□□□ -0.96
LIMCH1-207ENST00000508466 SYCE3A1L190 88 aa9.07□□□□□ -0.96
LIMCH1-207ENST00000508466 ERICH4A6NGS2 130 aa9.07□□□□□ -0.96
LIMCH1-207ENST00000508466 BCORL1Q5H9F3 1711 aa9.07□□□□□ -0.96
LIMCH1-207ENST00000508466 KCNA4P22459 653 aa9.06□□□□□ -0.96
LIMCH1-207ENST00000508466 SLFN5Q08AF3 891 aa9.06□□□□□ -0.96
LIMCH1-207ENST00000508466 PER1O15534 1290 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-207ENST00000508466 GAS2L2Q8NHY3 880 aa9.06□□□□□ -0.96
LIMCH1-207ENST00000508466 TTC12Q9H892 705 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-207ENST00000508466 GBP4Q96PP9 640 aa9.06□□□□□ -0.96
LIMCH1-207ENST00000508466 LNPKQ9C0E8 428 aa9.06□□□□□ -0.96
LIMCH1-207ENST00000508466 NAA30Q147X3 362 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-207ENST00000508466 NOL8Q76FK4 1167 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-207ENST00000508466 ZSCAN23Q3MJ62 389 aa9.04□□□□□ -0.96
LIMCH1-207ENST00000508466 PPP1R9BQ96SB3 815 aa9.04□□□□□ -0.96
LIMCH1-207ENST00000508466 MAP7D2Q96T17 732 aa9.04□□□□□ -0.96
LIMCH1-207ENST00000508466 NOL7Q9UMY1 257 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-207ENST00000508466 MAPK8IP3Q9UPT6 1336 aa9.04□□□□□ -0.96
LIMCH1-207ENST00000508466 IPO4Q8TEX9 1081 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-207ENST00000508466 DYNC1I1O14576 645 aa9.03□□□□□ -0.96
LIMCH1-207ENST00000508466 SASS6Q6UVJ0 657 aa9.03□□□□□ -0.96
LIMCH1-207ENST00000508466 BAG4O95429 457 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-207ENST00000508466 GDPD2Q9HCC8 539 aa9.03□□□□□ -0.96
LIMCH1-207ENST00000508466 PCF11O94913 1555 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-207ENST00000508466 NLRP1Q9C000 1473 aa9.02□□□□□ -0.96
LIMCH1-207ENST00000508466 ZKSCAN5Q9Y2L8 839 aa9.02□□□□□ -0.97
LIMCH1-207ENST00000508466 NPHP1O15259 732 aa9.02□□□□□ -0.97
LIMCH1-207ENST00000508466 TMX1Q9H3N1 280 aa9.02□□□□□ -0.97
LIMCH1-207ENST00000508466 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIMCH1-207ENST00000508466 PPP2R1AP30153 589 aa9.01□□□□□ -0.97
LIMCH1-207ENST00000508466 MLECQ14165 292 aa9.01□□□□□ -0.97
LIMCH1-207ENST00000508466 RAB3GAP1Q15042 981 aa9.01□□□□□ -0.97
LIMCH1-207ENST00000508466 TAF7LQ5H9L4 462 aa9.01□□□□□ -0.97
LIMCH1-207ENST00000508466 AK9Q5TCS8 1911 aa9□□□□□ -0.97
LIMCH1-207ENST00000508466 APBB1O00213 710 aa9□□□□□ -0.97
LIMCH1-207ENST00000508466 ZGPATQ8N5A5 531 aaKnown RBP9□□□□□ -0.97
LIMCH1-207ENST00000508466 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9□□□□□ -0.97
LIMCH1-207ENST00000508466 C1orf115Q9H7X2 142 aa9□□□□□ -0.97
LIMCH1-207ENST00000508466 ROCK2O75116 1388 aaKnown RBP9□□□□□ -0.97
LIMCH1-207ENST00000508466 GOLGA6L22H0YM25 854 aa9□□□□□ -0.97
LIMCH1-207ENST00000508466 IRX5P78411 483 aaPredicted RBP9□□□□□ -0.97
LIMCH1-207ENST00000508466 BCL2L12Q9HB09 334 aa9□□□□□ -0.97
LIMCH1-207ENST00000508466 KNSTRNQ9Y448 316 aa9□□□□□ -0.97
LIMCH1-207ENST00000508466 PDCL2Q8N4E4 241 aa8.99□□□□□ -0.97
LIMCH1-207ENST00000508466 GPT2Q8TD30 523 aa8.99□□□□□ -0.97
LIMCH1-207ENST00000508466 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.99□□□□□ -0.97
LIMCH1-207ENST00000508466 V9GYY5 206 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-207ENST00000508466 ITPRIPQ8IWB1 547 aa8.99□□□□□ -0.97
LIMCH1-207ENST00000508466 DHX37Q8IY37 1157 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-207ENST00000508466 TMEM63CQ9P1W3 806 aa8.99□□□□□ -0.97
LIMCH1-207ENST00000508466 ZNF500O60304 480 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-207ENST00000508466 UTP14CQ5TAP6 766 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-207ENST00000508466 FTSJ3Q8IY81 847 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-207ENST00000508466 SPC24Q8NBT2 197 aa8.99□□□□□ -0.97
LIMCH1-207ENST00000508466 RWDD1Q9H446 243 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-207ENST00000508466 TSR2Q969E8 191 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-207ENST00000508466 ST7Q9NRC1 585 aa8.98□□□□□ -0.97
LIMCH1-207ENST00000508466 RPRD2Q5VT52 1461 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-207ENST00000508466 USP25Q9UHP3 1055 aa8.98□□□□□ -0.97
LIMCH1-207ENST00000508466 CGNL1Q0VF96 1302 aa8.97□□□□□ -0.97
LIMCH1-207ENST00000508466 SKOR2Q2VWA4 1001 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-207ENST00000508466 TEX14Q8IWB6 1497 aa8.97□□□□□ -0.97
LIMCH1-207ENST00000508466 PARD3Q8TEW0 1356 aa8.97□□□□□ -0.97
LIMCH1-207ENST00000508466 DISP3Q9P2K9 1392 aa8.97□□□□□ -0.97
LIMCH1-207ENST00000508466 TRIM6-TRIM34B2RNG4 842 aa8.97□□□□□ -0.97
LIMCH1-207ENST00000508466 TRIM34Q9BYJ4 488 aa8.97□□□□□ -0.97
LIMCH1-207ENST00000508466 TOP2BQ02880 1626 aa8.97□□□□□ -0.97
LIMCH1-207ENST00000508466 KIAA2012Q0VF49 1180 aa8.96□□□□□ -0.97
LIMCH1-207ENST00000508466 KLHL40Q2TBA0 621 aa8.96□□□□□ -0.98
LIMCH1-207ENST00000508466 KLHL34Q8N239 644 aa8.96□□□□□ -0.98
LIMCH1-207ENST00000508466 MYRIPQ8NFW9 859 aa8.96□□□□□ -0.98
LIMCH1-207ENST00000508466 PMFBP1Q8TBY8 1022 aa8.96□□□□□ -0.98
LIMCH1-207ENST00000508466 LMBRD1Q9NUN5 540 aa8.96□□□□□ -0.98
LIMCH1-207ENST00000508466 KIF3AQ9Y496 699 aa8.96□□□□□ -0.98
LIMCH1-207ENST00000508466 NOLC1Q14978 699 aaKnown RBP eCLIP8.96□□□□□ -0.98
LIMCH1-207ENST00000508466 SECISBP2LQ93073 1101 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-207ENST00000508466 DDIT3P35638 169 aa8.95□□□□□ -0.98
LIMCH1-207ENST00000508466 RARSP54136 660 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-207ENST00000508466 ANKRD45Q5TZF3 282 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms