RNA–Protein interactions for RNA: ENST00000495835.1

HLA-C-209, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,073 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-209ENST00000495835 SPHKAPQ2M3C7 1700 aa36.53■■■■□ 3.44
HLA-C-209ENST00000495835 CHGAP10645 457 aaKnown RBP36.52■■■■□ 3.44
HLA-C-209ENST00000495835 KCNA6P17658 529 aa36.52■■■■□ 3.44
HLA-C-209ENST00000495835 SLC26A8Q96RN1 970 aa36.5■■■■□ 3.43
HLA-C-209ENST00000495835 PPP1R15AO75807 674 aaPredicted RBP36.49■■■■□ 3.43
HLA-C-209ENST00000495835 BCANQ96GW7 911 aa36.47■■■■□ 3.43
HLA-C-209ENST00000495835 PIP4K2BP78356 416 aa36.43■■■■□ 3.42
HLA-C-209ENST00000495835 TBX22Q9Y458 520 aa36.43■■■■□ 3.42
HLA-C-209ENST00000495835 ALKQ9UM73 1620 aa36.43■■■■□ 3.42
HLA-C-209ENST00000495835 XIRP1Q702N8 1843 aaKnown RBP36.42■■■■□ 3.42
HLA-C-209ENST00000495835 NWD1Q149M9 1564 aa36.41■■■■□ 3.42
HLA-C-209ENST00000495835 SCAF1Q9H7N4 1312 aaKnown RBP36.41■■■■□ 3.42
HLA-C-209ENST00000495835 NKTRP30414 1462 aaKnown RBP36.4■■■■□ 3.42
HLA-C-209ENST00000495835 TRIM52Q96A61 297 aa36.4■■■■□ 3.42
HLA-C-209ENST00000495835 TRPM2O94759 1503 aa36.39■■■■□ 3.42
HLA-C-209ENST00000495835 CHD2O14647 1828 aaKnown RBP36.37■■■■□ 3.41
HLA-C-209ENST00000495835 DIP2AQ14689 1571 aa36.36■■■■□ 3.41
HLA-C-209ENST00000495835 PROSER2Q86WR7 435 aaPredicted RBP36.34■■■■□ 3.41
HLA-C-209ENST00000495835 TMEM94Q12767 1356 aa36.34■■■■□ 3.41
HLA-C-209ENST00000495835 ACIN1Q9UKV3 1341 aaKnown RBP36.34■■■■□ 3.41
HLA-C-209ENST00000495835 PIK3R4Q99570 1358 aa36.33■■■■□ 3.41
HLA-C-209ENST00000495835 SLC4A1APQ9BWU0 796 aaKnown RBP36.33■■■■□ 3.41
HLA-C-209ENST00000495835 HSPA1LP34931 641 aa36.31■■■■□ 3.4
HLA-C-209ENST00000495835 ADAMTS13Q76LX8 1427 aa36.31■■■■□ 3.4
HLA-C-209ENST00000495835 CLTCL1P53675 1640 aa36.3■■■■□ 3.4
HLA-C-209ENST00000495835 KIF1BO60333 1816 aa36.29■■■■□ 3.4
HLA-C-209ENST00000495835 NUTM2DQ5VT03 806 aaPredicted RBP36.28■■■■□ 3.4
HLA-C-209ENST00000495835 ZNF326Q5BKZ1 582 aaKnown RBP36.27■■■■□ 3.4
HLA-C-209ENST00000495835 DISP3Q9P2K9 1392 aa36.26■■■■□ 3.39
HLA-C-209ENST00000495835 NCOA3Q9Y6Q9 1424 aa36.25■■■■□ 3.39
HLA-C-209ENST00000495835 SENP3Q9H4L4 574 aaPredicted RBP36.22■■■■□ 3.39
HLA-C-209ENST00000495835 SETBP1Q9Y6X0 1596 aa36.21■■■■□ 3.39
HLA-C-209ENST00000495835 FAM135BQ49AJ0 1406 aa36.18■■■■□ 3.38
HLA-C-209ENST00000495835 MSH6P52701 1360 aa36.18■■■■□ 3.38
HLA-C-209ENST00000495835 NEXMIFQ5QGS0 1516 aa36.18■■■■□ 3.38
HLA-C-209ENST00000495835 NRXN3Q9Y4C0 1643 aa36.15■■■■□ 3.38
HLA-C-209ENST00000495835 RPGRIP1LQ68CZ1 1315 aa36.14■■■■□ 3.38
HLA-C-209ENST00000495835 RBM33Q96EV2 1170 aaKnown RBP36.13■■■■□ 3.37
HLA-C-209ENST00000495835 SETD5Q9C0A6 1442 aa36.12■■■■□ 3.37
HLA-C-209ENST00000495835 MPHOSPH9Q99550 1183 aa36.12■■■■□ 3.37
HLA-C-209ENST00000495835 VGFO15240 615 aaPredicted RBP36.11■■■■□ 3.37
HLA-C-209ENST00000495835 AMOTL2Q9Y2J4 779 aa36.11■■■■□ 3.37
HLA-C-209ENST00000495835 PTPRUQ92729 1446 aa36.07■■■■□ 3.36
HLA-C-209ENST00000495835 C19orf44Q9H6X5 657 aa36.04■■■■□ 3.36
HLA-C-209ENST00000495835 SLAIN2Q9P270 581 aa36.04■■■■□ 3.36
HLA-C-209ENST00000495835 CCDC144AA2RUR9 1427 aa36.03■■■■□ 3.36
HLA-C-209ENST00000495835 XRN1Q8IZH2 1706 aaKnown RBP36.03■■■■□ 3.36
HLA-C-209ENST00000495835 FOXD1Q16676 465 aa36.02■■■■□ 3.36
HLA-C-209ENST00000495835 ROBO1Q9Y6N7 1651 aa36.01■■■■□ 3.36
HLA-C-209ENST00000495835 C14orf37Q86TY3 774 aa36■■■■□ 3.35
HLA-C-209ENST00000495835 METP08581 1390 aa36■■■■□ 3.35
HLA-C-209ENST00000495835 CADPS2Q86UW7 1296 aa35.99■■■■□ 3.35
HLA-C-209ENST00000495835 PPLO60437 1756 aa35.99■■■■□ 3.35
HLA-C-209ENST00000495835 MED1Q15648 1581 aaPredicted RBP35.98■■■■□ 3.35
HLA-C-209ENST00000495835 SIPA1L2Q9P2F8 1722 aaPredicted RBP35.97■■■■□ 3.35
HLA-C-209ENST00000495835 ATF3P18847 181 aa35.94■■■■□ 3.34
HLA-C-209ENST00000495835 RAB3GAP2Q9H2M9 1393 aa35.93■■■■□ 3.34
HLA-C-209ENST00000495835 DCCP43146 1447 aa35.92■■■■□ 3.34
HLA-C-209ENST00000495835 ILDR2Q71H61 639 aa35.92■■■■□ 3.34
HLA-C-209ENST00000495835 SPATA31E1Q6ZUB1 1445 aa35.91■■■■□ 3.34
HLA-C-209ENST00000495835 HRCP23327 699 aa35.9■■■■□ 3.34
HLA-C-209ENST00000495835 SETD1AO15047 1707 aaKnown RBP35.89■■■■□ 3.34
HLA-C-209ENST00000495835 ANKRD30BQ9BXX2 1392 aa35.88■■■■□ 3.33
HLA-C-209ENST00000495835 PRAG1Q86YV5 1406 aa35.85■■■■□ 3.33
HLA-C-209ENST00000495835 IFT172Q9UG01 1749 aa35.83■■■■□ 3.33
HLA-C-209ENST00000495835 PTCH1Q13635 1447 aa35.83■■■■□ 3.33
HLA-C-209ENST00000495835 RGL3Q3MIN7 710 aa35.82■■■■□ 3.32
HLA-C-209ENST00000495835 PHLPP1O60346 1717 aa35.8■■■■□ 3.32
HLA-C-209ENST00000495835 ADGRL3Q9HAR2 1447 aa35.79■■■■□ 3.32
HLA-C-209ENST00000495835 ADGRF5Q8IZF2 1346 aa35.77■■■■□ 3.32
HLA-C-209ENST00000495835 PHF23Q9BUL5 403 aaPredicted RBP35.76■■■■□ 3.32
HLA-C-209ENST00000495835 SOCS7O14512 581 aa35.74■■■■□ 3.31
HLA-C-209ENST00000495835 AHDC1Q5TGY3 1603 aaPredicted RBP35.73■■■■□ 3.31
HLA-C-209ENST00000495835 NALCNQ8IZF0 1738 aa35.71■■■■□ 3.31
HLA-C-209ENST00000495835 ROBO2Q9HCK4 1378 aa35.71■■■■□ 3.31
HLA-C-209ENST00000495835 JCADQ9P266 1359 aa35.71■■■■□ 3.31
HLA-C-209ENST00000495835 MST1RQ04912 1400 aa35.71■■■■□ 3.31
HLA-C-209ENST00000495835 COL16A1Q07092 1604 aaPredicted RBP35.71■■■■□ 3.31
HLA-C-209ENST00000495835 BRINP3Q76B58 766 aa35.7■■■■□ 3.31
HLA-C-209ENST00000495835 PIK3C2GO75747 1445 aa35.68■■■■□ 3.3
HLA-C-209ENST00000495835 MYOM2P54296 1465 aa35.63■■■■□ 3.29
HLA-C-209ENST00000495835 TECPR2O15040 1411 aa35.63■■■■□ 3.29
HLA-C-209ENST00000495835 ASXL1Q8IXJ9 1541 aa35.62■■■■□ 3.29
HLA-C-209ENST00000495835 NRXN1Q9ULB1 1477 aa35.62■■■■□ 3.29
HLA-C-209ENST00000495835 LRPPRCP42704 1394 aaKnown RBP35.61■■■■□ 3.29
HLA-C-209ENST00000495835 ABCC11Q96J66 1382 aa35.61■■■■□ 3.29
HLA-C-209ENST00000495835 C14orf93Q9H972 538 aaKnown RBP35.59■■■■□ 3.29
HLA-C-209ENST00000495835 SPATA31A6Q5VVP1 1343 aa35.58■■■■□ 3.29
HLA-C-209ENST00000495835 NHSL1Q5SYE7 1610 aa35.57■■■■□ 3.29
HLA-C-209ENST00000495835 STAC3Q96MF2 364 aa35.57■■■■□ 3.28
HLA-C-209ENST00000495835 KNDC1Q76NI1 1749 aa35.57■■■■□ 3.28
HLA-C-209ENST00000495835 LAMC1P11047 1609 aa35.57■■■■□ 3.28
HLA-C-209ENST00000495835 C1orf167Q5SNV9 1468 aa35.56■■■■□ 3.28
HLA-C-209ENST00000495835 SHPRHQ149N8 1683 aa35.56■■■■□ 3.28
HLA-C-209ENST00000495835 SIRT1Q96EB6 747 aa35.55■■■■□ 3.28
HLA-C-209ENST00000495835 YTHDC2Q9H6S0 1430 aaKnown RBP35.52■■■■□ 3.28
HLA-C-209ENST00000495835 TMEM132EQ6IEE7 984 aa35.52■■■■□ 3.28
HLA-C-209ENST00000495835 RGS17Q9UGC6 210 aaPredicted RBP35.52■■■■□ 3.28
HLA-C-209ENST00000495835 STK26Q9P289 416 aa35.51■■■■□ 3.28
HLA-C-209ENST00000495835 LRRC59Q96AG4 307 aaKnown RBP35.5■■■■□ 3.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms