RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 SCAF11Q99590 1463 aaKnown RBP17.14■□□□□ 0.33
PTPN7-217ENST00000495688 MS4A1P11836 297 aa17.14■□□□□ 0.33
PTPN7-217ENST00000495688 SPHKAPQ2M3C7 1700 aa17.13■□□□□ 0.33
PTPN7-217ENST00000495688 ZFYVE16Q7Z3T8 1539 aa17.12■□□□□ 0.33
PTPN7-217ENST00000495688 ZNF521Q96K83 1311 aa17.12■□□□□ 0.33
PTPN7-217ENST00000495688 PTPRTO14522 1441 aa17.11■□□□□ 0.33
PTPN7-217ENST00000495688 KIF3BO15066 747 aa17.11■□□□□ 0.33
PTPN7-217ENST00000495688 LAS1LQ9Y4W2 734 aaKnown RBP17.11■□□□□ 0.33
PTPN7-217ENST00000495688 CEP152O94986 1710 aa17.11■□□□□ 0.33
PTPN7-217ENST00000495688 GOLGA2Q08379 1002 aa17.11■□□□□ 0.33
PTPN7-217ENST00000495688 CFAP70Q5T0N1 1121 aa17.11■□□□□ 0.33
PTPN7-217ENST00000495688 ASXL1Q8IXJ9 1541 aa17.1■□□□□ 0.33
PTPN7-217ENST00000495688 CDCA8Q53HL2 280 aa17.1■□□□□ 0.33
PTPN7-217ENST00000495688 SPINK5Q9NQ38 1064 aaPredicted RBP17.1■□□□□ 0.33
PTPN7-217ENST00000495688 SYNMO15061 1565 aa17.1■□□□□ 0.33
PTPN7-217ENST00000495688 UGGT1Q9NYU2 1555 aa17.09■□□□□ 0.33
PTPN7-217ENST00000495688 RTL5Q5HYW3 569 aaPredicted RBP17.09■□□□□ 0.33
PTPN7-217ENST00000495688 MYOM1P52179 1685 aa17.09■□□□□ 0.33
PTPN7-217ENST00000495688 SCAPERQ9BY12 1400 aa17.09■□□□□ 0.33
PTPN7-217ENST00000495688 KDM2BQ8NHM5 1336 aa17.08■□□□□ 0.32
PTPN7-217ENST00000495688 APAF1O14727 1248 aa17.08■□□□□ 0.32
PTPN7-217ENST00000495688 RTEL1-TNFRSF6BF6WH68 1400 aa17.08■□□□□ 0.32
PTPN7-217ENST00000495688 ADGRF5Q8IZF2 1346 aa17.08■□□□□ 0.32
PTPN7-217ENST00000495688 UHRF1BP1LA0JNW5 1464 aa17.07■□□□□ 0.32
PTPN7-217ENST00000495688 SLFN5Q08AF3 891 aa17.06■□□□□ 0.32
PTPN7-217ENST00000495688 PIK3C2GO75747 1445 aa17.06■□□□□ 0.32
PTPN7-217ENST00000495688 DEPDC5O75140 1603 aa17.06■□□□□ 0.32
PTPN7-217ENST00000495688 CARD14Q9BXL6 1004 aa17.05■□□□□ 0.32
PTPN7-217ENST00000495688 DMRT2Q9Y5R5 561 aa17.05■□□□□ 0.32
PTPN7-217ENST00000495688 TET3O43151 1660 aa17.04■□□□□ 0.32
PTPN7-217ENST00000495688 EIF3AQ14152 1382 aaKnown RBP17.04■□□□□ 0.32
PTPN7-217ENST00000495688 ATP7AQ04656 1500 aa17.04■□□□□ 0.32
PTPN7-217ENST00000495688 CLASP1Q7Z460 1538 aa17.04■□□□□ 0.32
PTPN7-217ENST00000495688 KANK1Q14678 1352 aa17.03■□□□□ 0.32
PTPN7-217ENST00000495688 FANCAO15360 1455 aa17.03■□□□□ 0.32
PTPN7-217ENST00000495688 BCAR3O75815 825 aa17.03■□□□□ 0.32
PTPN7-217ENST00000495688 STAC3Q96MF2 364 aa17.03■□□□□ 0.32
PTPN7-217ENST00000495688 ERVK-7P63135 1459 aa17.02■□□□□ 0.32
PTPN7-217ENST00000495688 KDM5AP29375 1690 aaKnown RBP17.02■□□□□ 0.32
PTPN7-217ENST00000495688 NEFMP07197 916 aa17.02■□□□□ 0.31
PTPN7-217ENST00000495688 CENPQQ7L2Z9 268 aaPredicted RBP17.02■□□□□ 0.31
PTPN7-217ENST00000495688 TRMT2AQ8IZ69 625 aaKnown RBP17.01■□□□□ 0.31
PTPN7-217ENST00000495688 NPC1L1Q9UHC9 1359 aa17.01■□□□□ 0.31
PTPN7-217ENST00000495688 SLC4A3P48751 1232 aa17.01■□□□□ 0.31
PTPN7-217ENST00000495688 ABCA6Q8N139 1617 aa17■□□□□ 0.31
PTPN7-217ENST00000495688 VWDEQ8N2E2 1590 aa17■□□□□ 0.31
PTPN7-217ENST00000495688 INO80Q9ULG1 1556 aaPredicted RBP17■□□□□ 0.31
PTPN7-217ENST00000495688 RGS3P49796 1198 aa16.99■□□□□ 0.31
PTPN7-217ENST00000495688 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.99■□□□□ 0.31
PTPN7-217ENST00000495688 MAP3K4Q9Y6R4 1608 aa16.99■□□□□ 0.31
PTPN7-217ENST00000495688 ARAP3Q8WWN8 1544 aa16.98■□□□□ 0.31
PTPN7-217ENST00000495688 ADGRL1O94910 1474 aa16.98■□□□□ 0.31
PTPN7-217ENST00000495688 MROH1Q8NDA8 1641 aa16.98■□□□□ 0.31
PTPN7-217ENST00000495688 TNNT2P45379 298 aaPredicted RBP16.98■□□□□ 0.31
PTPN7-217ENST00000495688 CHGAP10645 457 aaKnown RBP16.97■□□□□ 0.31
PTPN7-217ENST00000495688 PRKCSHP14314 528 aaPredicted RBP16.97■□□□□ 0.31
PTPN7-217ENST00000495688 KIAA1210Q9ULL0 1709 aa16.97■□□□□ 0.31
PTPN7-217ENST00000495688 NKTRP30414 1462 aaKnown RBP16.97■□□□□ 0.31
PTPN7-217ENST00000495688 C8orf34Q49A92 452 aa16.96■□□□□ 0.31
PTPN7-217ENST00000495688 ABCA9Q8IUA7 1624 aa16.96■□□□□ 0.31
PTPN7-217ENST00000495688 TRAK1Q9UPV9 953 aa16.95■□□□□ 0.3
PTPN7-217ENST00000495688 MROH2AA6NES4 1674 aa16.94■□□□□ 0.3
PTPN7-217ENST00000495688 E9PSI1 815 aa16.94■□□□□ 0.3
PTPN7-217ENST00000495688 NEUROD2Q15784 382 aa16.94■□□□□ 0.3
PTPN7-217ENST00000495688 MYOM2P54296 1465 aa16.94■□□□□ 0.3
PTPN7-217ENST00000495688 CFAP65Q6ZU64 1925 aaKnown RBP16.94■□□□□ 0.3
PTPN7-217ENST00000495688 KIF1BO60333 1816 aa16.93■□□□□ 0.3
PTPN7-217ENST00000495688 FAM161AQ3B820 660 aa16.93■□□□□ 0.3
PTPN7-217ENST00000495688 SLC12A5Q9H2X9 1139 aa16.93■□□□□ 0.3
PTPN7-217ENST00000495688 NOS1P29475 1434 aa16.93■□□□□ 0.3
PTPN7-217ENST00000495688 DDRGK1Q96HY6 314 aa16.93■□□□□ 0.3
PTPN7-217ENST00000495688 RRP7AQ9Y3A4 280 aaKnown RBP16.93■□□□□ 0.3
PTPN7-217ENST00000495688 TMEM132EQ6IEE7 984 aa16.92■□□□□ 0.3
PTPN7-217ENST00000495688 EFCAB6Q5THR3 1501 aa16.92■□□□□ 0.3
PTPN7-217ENST00000495688 IGHDP01880 384 aa16.92■□□□□ 0.3
PTPN7-217ENST00000495688 PPRC1Q5VV67 1664 aaKnown RBP16.91■□□□□ 0.3
PTPN7-217ENST00000495688 WWC1Q8IX03 1113 aa16.91■□□□□ 0.3
PTPN7-217ENST00000495688 CENPJQ9HC77 1338 aaPredicted RBP16.91■□□□□ 0.3
PTPN7-217ENST00000495688 PANK1Q8TE04 598 aa16.9■□□□□ 0.3
PTPN7-217ENST00000495688 IFT172Q9UG01 1749 aa16.9■□□□□ 0.3
PTPN7-217ENST00000495688 PPM1GO15355 546 aaPredicted RBP16.9■□□□□ 0.3
PTPN7-217ENST00000495688 NSD3Q9BZ95 1437 aa16.9■□□□□ 0.3
PTPN7-217ENST00000495688 NEURL4Q96JN8 1562 aa16.89■□□□□ 0.29
PTPN7-217ENST00000495688 MORC1Q86VD1 984 aa16.89■□□□□ 0.29
PTPN7-217ENST00000495688 COG6Q9Y2V7 657 aa16.89■□□□□ 0.29
PTPN7-217ENST00000495688 KIDINS220Q9ULH0 1771 aa16.89■□□□□ 0.29
PTPN7-217ENST00000495688 GGT6Q6P531 493 aa16.88■□□□□ 0.29
PTPN7-217ENST00000495688 USP35Q9P2H5 1018 aa16.88■□□□□ 0.29
PTPN7-217ENST00000495688 SLC24A1O60721 1099 aa16.88■□□□□ 0.29
PTPN7-217ENST00000495688 NUTM2DQ5VT03 806 aaPredicted RBP16.88■□□□□ 0.29
PTPN7-217ENST00000495688 POLR3AO14802 1390 aaPredicted RBP16.87■□□□□ 0.29
PTPN7-217ENST00000495688 NRXN1Q9ULB1 1477 aa16.87■□□□□ 0.29
PTPN7-217ENST00000495688 ASXL2Q76L83 1435 aa16.87■□□□□ 0.29
PTPN7-217ENST00000495688 FRAT1Q92837 279 aaPredicted RBP16.87■□□□□ 0.29
PTPN7-217ENST00000495688 CANXP27824 592 aaKnown RBP16.86■□□□□ 0.29
PTPN7-217ENST00000495688 SBNO2Q9Y2G9 1366 aa16.86■□□□□ 0.29
PTPN7-217ENST00000495688 SENP3Q9H4L4 574 aaPredicted RBP16.85■□□□□ 0.29
PTPN7-217ENST00000495688 TNNQ9UQP3 1299 aa16.85■□□□□ 0.29
PTPN7-217ENST00000495688 NFKBIBQ15653 356 aa16.84■□□□□ 0.29
PTPN7-217ENST00000495688 TCP11L2Q8N4U5 519 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms