RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 CFAP53Q96M91 514 aa17.33■□□□□ 0.36
GPC1-209ENST00000495100 ITPRIPQ8IWB1 547 aa17.32■□□□□ 0.36
GPC1-209ENST00000495100 TCP11L2Q8N4U5 519 aa17.32■□□□□ 0.36
GPC1-209ENST00000495100 PBRM1Q86U86 1689 aa17.32■□□□□ 0.36
GPC1-209ENST00000495100 ARID4BQ4LE39 1312 aaPredicted RBP17.31■□□□□ 0.36
GPC1-209ENST00000495100 ZBTB7CA1YPR0 619 aa17.31■□□□□ 0.36
GPC1-209ENST00000495100 UPF2Q9HAU5 1272 aaKnown RBP17.31■□□□□ 0.36
GPC1-209ENST00000495100 HSP90AA1P07900 732 aaKnown RBP17.3■□□□□ 0.36
GPC1-209ENST00000495100 MAPK8IP3Q9UPT6 1336 aa17.3■□□□□ 0.36
GPC1-209ENST00000495100 MFAP1P55081 439 aaKnown RBP17.3■□□□□ 0.36
GPC1-209ENST00000495100 DUSP27Q5VZP5 1158 aa17.3■□□□□ 0.36
GPC1-209ENST00000495100 PLEKHH1Q9ULM0 1364 aa17.3■□□□□ 0.36
GPC1-209ENST00000495100 EIF4G3O43432 1585 aaKnown RBP17.3■□□□□ 0.36
GPC1-209ENST00000495100 DNMT1P26358 1616 aaKnown RBP17.29■□□□□ 0.36
GPC1-209ENST00000495100 SMC4Q9NTJ3 1288 aa17.29■□□□□ 0.36
GPC1-209ENST00000495100 CCDC141Q6ZP82 1450 aa17.29■□□□□ 0.36
GPC1-209ENST00000495100 DDRGK1Q96HY6 314 aa17.29■□□□□ 0.36
GPC1-209ENST00000495100 SYCP2Q9BX26 1530 aa17.29■□□□□ 0.36
GPC1-209ENST00000495100 CYB5RLQ6IPT4 315 aa17.29■□□□□ 0.36
GPC1-209ENST00000495100 HMOX1P09601 288 aa17.28■□□□□ 0.36
GPC1-209ENST00000495100 BRPF3Q9ULD4 1205 aa17.28■□□□□ 0.36
GPC1-209ENST00000495100 FRAT2O75474 233 aaPredicted RBP17.28■□□□□ 0.36
GPC1-209ENST00000495100 BCORL1Q5H9F3 1711 aa17.28■□□□□ 0.36
GPC1-209ENST00000495100 IGHDP01880 384 aa17.26■□□□□ 0.35
GPC1-209ENST00000495100 AMER1Q5JTC6 1135 aaPredicted RBP17.26■□□□□ 0.35
GPC1-209ENST00000495100 CARD14Q9BXL6 1004 aa17.26■□□□□ 0.35
GPC1-209ENST00000495100 FAM161AQ3B820 660 aa17.26■□□□□ 0.35
GPC1-209ENST00000495100 PRAG1Q86YV5 1406 aa17.26■□□□□ 0.35
GPC1-209ENST00000495100 TRAPPC8Q9Y2L5 1435 aa17.26■□□□□ 0.35
GPC1-209ENST00000495100 CENPQQ7L2Z9 268 aaPredicted RBP17.25■□□□□ 0.35
GPC1-209ENST00000495100 CEP170Q5SW79 1584 aa17.25■□□□□ 0.35
GPC1-209ENST00000495100 NFKBIBQ15653 356 aa17.25■□□□□ 0.35
GPC1-209ENST00000495100 THUMPD2Q9BTF0 503 aaKnown RBP17.25■□□□□ 0.35
GPC1-209ENST00000495100 ESF1Q9H501 851 aaKnown RBP17.25■□□□□ 0.35
GPC1-209ENST00000495100 CFAP65Q6ZU64 1925 aaKnown RBP17.24■□□□□ 0.35
GPC1-209ENST00000495100 FAM135AQ9P2D6 1515 aa17.23■□□□□ 0.35
GPC1-209ENST00000495100 RALGAPBQ86X10 1494 aa17.23■□□□□ 0.35
GPC1-209ENST00000495100 GCC2Q8IWJ2 1684 aa17.23■□□□□ 0.35
GPC1-209ENST00000495100 SLFN5Q08AF3 891 aa17.22■□□□□ 0.35
GPC1-209ENST00000495100 C14orf37Q86TY3 774 aa17.22■□□□□ 0.35
GPC1-209ENST00000495100 E9PSI1 815 aa17.22■□□□□ 0.35
GPC1-209ENST00000495100 C1orf115Q9H7X2 142 aa17.22■□□□□ 0.35
GPC1-209ENST00000495100 PARD3Q8TEW0 1356 aa17.21■□□□□ 0.35
GPC1-209ENST00000495100 WWC1Q8IX03 1113 aa17.2■□□□□ 0.34
GPC1-209ENST00000495100 A2MP01023 1474 aa17.2■□□□□ 0.34
GPC1-209ENST00000495100 SEC24BO95487 1268 aa17.2■□□□□ 0.34
GPC1-209ENST00000495100 EXOSC9Q06265 439 aaKnown RBP17.18■□□□□ 0.34
GPC1-209ENST00000495100 ZNF428Q96B54 188 aa17.17■□□□□ 0.34
GPC1-209ENST00000495100 LRPPRCP42704 1394 aaKnown RBP17.17■□□□□ 0.34
GPC1-209ENST00000495100 EIF3AQ14152 1382 aaKnown RBP17.17■□□□□ 0.34
GPC1-209ENST00000495100 RLBP1P12271 317 aa17.16■□□□□ 0.34
GPC1-209ENST00000495100 RIPK4P57078 832 aa17.16■□□□□ 0.34
GPC1-209ENST00000495100 LNPKQ9C0E8 428 aa17.16■□□□□ 0.34
GPC1-209ENST00000495100 FBXO31Q5XUX0 539 aaPredicted RBP17.16■□□□□ 0.34
GPC1-209ENST00000495100 ANO8Q9HCE9 1232 aaPredicted RBP17.16■□□□□ 0.34
GPC1-209ENST00000495100 MS4A1P11836 297 aa17.15■□□□□ 0.34
GPC1-209ENST00000495100 PRAM1Q96QH2 718 aa17.15■□□□□ 0.34
GPC1-209ENST00000495100 CGNL1Q0VF96 1302 aa17.14■□□□□ 0.33
GPC1-209ENST00000495100 BECN1Q14457 450 aa17.14■□□□□ 0.33
GPC1-209ENST00000495100 WAPLQ7Z5K2 1190 aa17.13■□□□□ 0.33
GPC1-209ENST00000495100 RUNDC1Q96C34 613 aa17.13■□□□□ 0.33
GPC1-209ENST00000495100 PDZRN3Q9UPQ7 1066 aa17.13■□□□□ 0.33
GPC1-209ENST00000495100 NSD3Q9BZ95 1437 aa17.13■□□□□ 0.33
GPC1-209ENST00000495100 RNF123Q5XPI4 1314 aa17.13■□□□□ 0.33
GPC1-209ENST00000495100 NECTIN2Q92692 538 aa17.13■□□□□ 0.33
GPC1-209ENST00000495100 PLA2R1Q13018 1463 aa17.12■□□□□ 0.33
GPC1-209ENST00000495100 MBD5Q9P267 1494 aa17.12■□□□□ 0.33
GPC1-209ENST00000495100 CABP1Q9NZU7 370 aa17.12■□□□□ 0.33
GPC1-209ENST00000495100 PCDHB15Q9Y5E8 787 aa17.11■□□□□ 0.33
GPC1-209ENST00000495100 GSE1Q14687 1217 aa17.11■□□□□ 0.33
GPC1-209ENST00000495100 DCTN1Q14203 1278 aa17.1■□□□□ 0.33
GPC1-209ENST00000495100 KDM5CP41229 1560 aa17.1■□□□□ 0.33
GPC1-209ENST00000495100 NCLP19338 710 aaKnown RBP17.09■□□□□ 0.33
GPC1-209ENST00000495100 ERCC6L2Q5T890 1561 aa17.09■□□□□ 0.33
GPC1-209ENST00000495100 MYH16Q9H6N6 1097 aa17.09■□□□□ 0.33
GPC1-209ENST00000495100 RWDD1Q9H446 243 aaPredicted RBP17.09■□□□□ 0.33
GPC1-209ENST00000495100 MAGI2Q86UL8 1455 aa17.09■□□□□ 0.33
GPC1-209ENST00000495100 NOS1P29475 1434 aa17.08■□□□□ 0.32
GPC1-209ENST00000495100 ANKRD45Q5TZF3 282 aa17.08■□□□□ 0.32
GPC1-209ENST00000495100 FOXD4L5Q5VV16 416 aaPredicted RBP17.08■□□□□ 0.32
GPC1-209ENST00000495100 FOXD4L4Q8WXT5 416 aaPredicted RBP17.08■□□□□ 0.32
GPC1-209ENST00000495100 EVC2Q86UK5 1308 aa17.08■□□□□ 0.32
GPC1-209ENST00000495100 ABCC10Q5T3U5 1492 aa17.08■□□□□ 0.32
GPC1-209ENST00000495100 IDI1Q13907 227 aa17.08■□□□□ 0.32
GPC1-209ENST00000495100 DZIP1LQ8IYY4 767 aaKnown RBP17.08■□□□□ 0.32
GPC1-209ENST00000495100 LTV1Q96GA3 475 aaPredicted RBP17.08■□□□□ 0.32
GPC1-209ENST00000495100 NCKAP5LQ9HCH0 1330 aa17.08■□□□□ 0.32
GPC1-209ENST00000495100 NUTM2GQ5VZR2 741 aa17.07■□□□□ 0.32
GPC1-209ENST00000495100 ZKSCAN2Q63HK3 967 aa17.07■□□□□ 0.32
GPC1-209ENST00000495100 NUP160Q12769 1436 aa17.07■□□□□ 0.32
GPC1-209ENST00000495100 RRS1Q15050 365 aaKnown RBP17.07■□□□□ 0.32
GPC1-209ENST00000495100 C8orf34Q49A92 452 aa17.07■□□□□ 0.32
GPC1-209ENST00000495100 NOB1Q9ULX3 412 aaKnown RBP17.07■□□□□ 0.32
GPC1-209ENST00000495100 RARSP54136 660 aaKnown RBP17.07■□□□□ 0.32
GPC1-209ENST00000495100 NOL8Q76FK4 1167 aaKnown RBP17.07■□□□□ 0.32
GPC1-209ENST00000495100 UHRF1BP1Q6BDS2 1440 aa17.06■□□□□ 0.32
GPC1-209ENST00000495100 UGGT1Q9NYU2 1555 aa17.06■□□□□ 0.32
GPC1-209ENST00000495100 SLC4A10Q6U841 1118 aa17.06■□□□□ 0.32
GPC1-209ENST00000495100 HDGFL2Q7Z4V5 671 aaPredicted RBP17.06■□□□□ 0.32
GPC1-209ENST00000495100 VGFO15240 615 aaPredicted RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms