RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 GGT6Q6P531 493 aa22■■□□□ 1.11
CCDC88B-210ENST00000494566 KNSTRNQ9Y448 316 aa22■■□□□ 1.11
CCDC88B-210ENST00000494566 ANP32AP39687 249 aaKnown RBP22■■□□□ 1.11
CCDC88B-210ENST00000494566 LAS1LQ9Y4W2 734 aaKnown RBP22■■□□□ 1.11
CCDC88B-210ENST00000494566 NPM1P06748 294 aaKnown RBP eCLIP21.99■■□□□ 1.11
CCDC88B-210ENST00000494566 SENP3Q9H4L4 574 aaPredicted RBP21.99■■□□□ 1.11
CCDC88B-210ENST00000494566 IQGAP1P46940 1657 aa21.98■■□□□ 1.11
CCDC88B-210ENST00000494566 MROH1Q8NDA8 1641 aa21.98■■□□□ 1.11
CCDC88B-210ENST00000494566 SCAF11Q99590 1463 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-210ENST00000494566 ADAMTS8Q9UP79 889 aa21.97■■□□□ 1.11
CCDC88B-210ENST00000494566 RCAN3Q9UKA8 241 aa21.96■■□□□ 1.11
CCDC88B-210ENST00000494566 KIDINS220Q9ULH0 1771 aa21.96■■□□□ 1.11
CCDC88B-210ENST00000494566 RRP1P56182 461 aaKnown RBP21.95■■□□□ 1.1
CCDC88B-210ENST00000494566 ZBTB47Q9UFB7 747 aaPredicted RBP21.95■■□□□ 1.1
CCDC88B-210ENST00000494566 VWDEQ8N2E2 1590 aa21.94■■□□□ 1.1
CCDC88B-210ENST00000494566 OSCARQ8IYS5 282 aa21.94■■□□□ 1.1
CCDC88B-210ENST00000494566 PPP2R1AP30153 589 aa21.94■■□□□ 1.1
CCDC88B-210ENST00000494566 WASHC2CQ9Y4E1 1318 aa21.94■■□□□ 1.1
CCDC88B-210ENST00000494566 AMER1Q5JTC6 1135 aaPredicted RBP21.93■■□□□ 1.1
CCDC88B-210ENST00000494566 NUTM2DQ5VT03 806 aaPredicted RBP21.93■■□□□ 1.1
CCDC88B-210ENST00000494566 RAPGEF3O95398 923 aa21.91■■□□□ 1.1
CCDC88B-210ENST00000494566 PPRC1Q5VV67 1664 aaKnown RBP21.9■■□□□ 1.1
CCDC88B-210ENST00000494566 CD109Q6YHK3 1445 aa21.9■■□□□ 1.1
CCDC88B-210ENST00000494566 MROH2AA6NES4 1674 aa21.89■■□□□ 1.1
CCDC88B-210ENST00000494566 IPO9Q96P70 1041 aaKnown RBP21.89■■□□□ 1.09
CCDC88B-210ENST00000494566 ABCA6Q8N139 1617 aa21.88■■□□□ 1.09
CCDC88B-210ENST00000494566 RTN4Q9NQC3 1192 aaKnown RBP21.88■■□□□ 1.09
CCDC88B-210ENST00000494566 EFCAB6Q5THR3 1501 aa21.88■■□□□ 1.09
CCDC88B-210ENST00000494566 ZNF518AQ6AHZ1 1483 aa21.88■■□□□ 1.09
CCDC88B-210ENST00000494566 WDR43Q15061 677 aaKnown RBP eCLIP21.87■■□□□ 1.09
CCDC88B-210ENST00000494566 CCDC146Q8IYE0 955 aa21.87■■□□□ 1.09
CCDC88B-210ENST00000494566 TRAK1Q9UPV9 953 aa21.87■■□□□ 1.09
CCDC88B-210ENST00000494566 BLMP54132 1417 aaPredicted RBP21.87■■□□□ 1.09
CCDC88B-210ENST00000494566 CDCA8Q53HL2 280 aa21.86■■□□□ 1.09
CCDC88B-210ENST00000494566 TMEM132EQ6IEE7 984 aa21.86■■□□□ 1.09
CCDC88B-210ENST00000494566 NOS1P29475 1434 aa21.86■■□□□ 1.09
CCDC88B-210ENST00000494566 RTL5Q5HYW3 569 aaPredicted RBP21.86■■□□□ 1.09
CCDC88B-210ENST00000494566 KIF1BO60333 1816 aa21.86■■□□□ 1.09
CCDC88B-210ENST00000494566 EIF3AQ14152 1382 aaKnown RBP21.85■■□□□ 1.09
CCDC88B-210ENST00000494566 MAP3K4Q9Y6R4 1608 aa21.85■■□□□ 1.09
CCDC88B-210ENST00000494566 MYOM1P52179 1685 aa21.85■■□□□ 1.09
CCDC88B-210ENST00000494566 PDE3BQ13370 1112 aa21.83■■□□□ 1.09
CCDC88B-210ENST00000494566 CARD14Q9BXL6 1004 aa21.83■■□□□ 1.08
CCDC88B-210ENST00000494566 SYNMO15061 1565 aa21.82■■□□□ 1.08
CCDC88B-210ENST00000494566 NPATQ14207 1427 aa21.82■■□□□ 1.08
CCDC88B-210ENST00000494566 SLC4A3P48751 1232 aa21.82■■□□□ 1.08
CCDC88B-210ENST00000494566 STAC3Q96MF2 364 aa21.82■■□□□ 1.08
CCDC88B-210ENST00000494566 PLEKHH1Q9ULM0 1364 aa21.82■■□□□ 1.08
CCDC88B-210ENST00000494566 ERVK-7P63135 1459 aa21.82■■□□□ 1.08
CCDC88B-210ENST00000494566 ASXL1Q8IXJ9 1541 aa21.81■■□□□ 1.08
CCDC88B-210ENST00000494566 POGZQ7Z3K3 1410 aa21.81■■□□□ 1.08
CCDC88B-210ENST00000494566 FRMPD1Q5SYB0 1578 aa21.8■■□□□ 1.08
CCDC88B-210ENST00000494566 TNNT2P45379 298 aaPredicted RBP21.8■■□□□ 1.08
CCDC88B-210ENST00000494566 KDM5AP29375 1690 aaKnown RBP21.79■■□□□ 1.08
CCDC88B-210ENST00000494566 C20orf194Q5TEA3 1177 aa21.79■■□□□ 1.08
CCDC88B-210ENST00000494566 MYOM2P54296 1465 aa21.77■■□□□ 1.08
CCDC88B-210ENST00000494566 PDE4AP27815 886 aa21.77■■□□□ 1.08
CCDC88B-210ENST00000494566 CRBNQ96SW2 442 aa21.77■■□□□ 1.08
CCDC88B-210ENST00000494566 ZMYM4Q5VZL5 1548 aa21.76■■□□□ 1.07
CCDC88B-210ENST00000494566 IFT172Q9UG01 1749 aa21.75■■□□□ 1.07
CCDC88B-210ENST00000494566 KIAA1210Q9ULL0 1709 aa21.75■■□□□ 1.07
CCDC88B-210ENST00000494566 CENPJQ9HC77 1338 aaPredicted RBP21.75■■□□□ 1.07
CCDC88B-210ENST00000494566 SLC12A5Q9H2X9 1139 aa21.75■■□□□ 1.07
CCDC88B-210ENST00000494566 SAFB2Q14151 953 aaKnown RBP eCLIP21.74■■□□□ 1.07
CCDC88B-210ENST00000494566 NEFMP07197 916 aa21.73■■□□□ 1.07
CCDC88B-210ENST00000494566 HECW2Q9P2P5 1572 aa21.73■■□□□ 1.07
CCDC88B-210ENST00000494566 APAF1O14727 1248 aa21.73■■□□□ 1.07
CCDC88B-210ENST00000494566 ADGRB3O60242 1522 aa21.72■■□□□ 1.07
CCDC88B-210ENST00000494566 SPINK5Q9NQ38 1064 aaPredicted RBP21.71■■□□□ 1.07
CCDC88B-210ENST00000494566 LMTK2Q8IWU2 1503 aa21.71■■□□□ 1.07
CCDC88B-210ENST00000494566 DUSP27Q5VZP5 1158 aa21.71■■□□□ 1.07
CCDC88B-210ENST00000494566 MLH3Q9UHC1 1453 aa21.71■■□□□ 1.07
CCDC88B-210ENST00000494566 IL27Q8NEV9 243 aa21.7■■□□□ 1.06
CCDC88B-210ENST00000494566 C14orf93Q9H972 538 aaKnown RBP21.69■■□□□ 1.06
CCDC88B-210ENST00000494566 NRXN1Q9ULB1 1477 aa21.68■■□□□ 1.06
CCDC88B-210ENST00000494566 PIK3C2GO75747 1445 aa21.68■■□□□ 1.06
CCDC88B-210ENST00000494566 GOLGA2Q08379 1002 aa21.68■■□□□ 1.06
CCDC88B-210ENST00000494566 CYB5RLQ6IPT4 315 aa21.68■■□□□ 1.06
CCDC88B-210ENST00000494566 ABCC3O15438 1527 aa21.68■■□□□ 1.06
CCDC88B-210ENST00000494566 NEURL4Q96JN8 1562 aa21.67■■□□□ 1.06
CCDC88B-210ENST00000494566 DMRT2Q9Y5R5 561 aa21.67■■□□□ 1.06
CCDC88B-210ENST00000494566 SIGLEC1Q9BZZ2 1709 aa21.67■■□□□ 1.06
CCDC88B-210ENST00000494566 NSD3Q9BZ95 1437 aa21.66■■□□□ 1.06
CCDC88B-210ENST00000494566 INSRP06213 1382 aa21.66■■□□□ 1.06
CCDC88B-210ENST00000494566 STK26Q9P289 416 aa21.66■■□□□ 1.06
CCDC88B-210ENST00000494566 PPLO60437 1756 aa21.65■■□□□ 1.06
CCDC88B-210ENST00000494566 ZNF521Q96K83 1311 aa21.65■■□□□ 1.06
CCDC88B-210ENST00000494566 YEATS2Q9ULM3 1422 aa21.65■■□□□ 1.06
CCDC88B-210ENST00000494566 RGS3P49796 1198 aa21.65■■□□□ 1.06
CCDC88B-210ENST00000494566 CFAP74Q9C0B2 1584 aa21.65■■□□□ 1.06
CCDC88B-210ENST00000494566 NEUROD2Q15784 382 aa21.64■■□□□ 1.06
CCDC88B-210ENST00000494566 IDI1Q13907 227 aa21.64■■□□□ 1.05
CCDC88B-210ENST00000494566 NPC1L1Q9UHC9 1359 aa21.63■■□□□ 1.05
CCDC88B-210ENST00000494566 MORC1Q86VD1 984 aa21.63■■□□□ 1.05
CCDC88B-210ENST00000494566 BACH2Q9BYV9 841 aa21.62■■□□□ 1.05
CCDC88B-210ENST00000494566 QRICH2Q9H0J4 1663 aa21.62■■□□□ 1.05
CCDC88B-210ENST00000494566 RRP7AQ9Y3A4 280 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-210ENST00000494566 ADGRB1O14514 1584 aa21.61■■□□□ 1.05
CCDC88B-210ENST00000494566 SLFN5Q08AF3 891 aa21.61■■□□□ 1.05
CCDC88B-210ENST00000494566 CABP2Q9NPB3 220 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms