RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 KDM2AQ9Y2K7 1162 aa16.32■□□□□ 0.2
MCF2L-231ENST00000494043 PPLO60437 1756 aa16.31■□□□□ 0.2
MCF2L-231ENST00000494043 UBR1Q8IWV7 1749 aa16.31■□□□□ 0.2
MCF2L-231ENST00000494043 NBPF8Q3BBV2 869 aa16.31■□□□□ 0.2
MCF2L-231ENST00000494043 KDM4FA0A1W2PPD8 638 aa16.3■□□□□ 0.2
MCF2L-231ENST00000494043 NRXN1Q9ULB1 1477 aa16.29■□□□□ 0.2
MCF2L-231ENST00000494043 CEP170BQ9Y4F5 1589 aaPredicted RBP16.29■□□□□ 0.2
MCF2L-231ENST00000494043 ZNF142P52746 1687 aaPredicted RBP16.28■□□□□ 0.2
MCF2L-231ENST00000494043 RALGAPBQ86X10 1494 aa16.28■□□□□ 0.2
MCF2L-231ENST00000494043 ZFYVE9O95405 1425 aa16.27■□□□□ 0.19
MCF2L-231ENST00000494043 RIMS2Q9UQ26 1411 aa16.27■□□□□ 0.19
MCF2L-231ENST00000494043 ADGRF5Q8IZF2 1346 aa16.25■□□□□ 0.19
MCF2L-231ENST00000494043 TRPM1Q7Z4N2 1603 aa16.25■□□□□ 0.19
MCF2L-231ENST00000494043 SETD1BQ9UPS6 1966 aaKnown RBP16.25■□□□□ 0.19
MCF2L-231ENST00000494043 TMEM2Q9UHN6 1383 aa16.25■□□□□ 0.19
MCF2L-231ENST00000494043 VGFO15240 615 aaPredicted RBP16.24■□□□□ 0.19
MCF2L-231ENST00000494043 PIK3C2GO75747 1445 aa16.24■□□□□ 0.19
MCF2L-231ENST00000494043 SLIT1O75093 1534 aa16.24■□□□□ 0.19
MCF2L-231ENST00000494043 ARHGAP23Q9P227 1491 aa16.23■□□□□ 0.19
MCF2L-231ENST00000494043 NUTM2DQ5VT03 806 aaPredicted RBP16.22■□□□□ 0.19
MCF2L-231ENST00000494043 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.22■□□□□ 0.19
MCF2L-231ENST00000494043 KIAA1210Q9ULL0 1709 aa16.22■□□□□ 0.19
MCF2L-231ENST00000494043 THEMISQ8N1K5 641 aaPredicted RBP16.21■□□□□ 0.19
MCF2L-231ENST00000494043 ROCK2O75116 1388 aaKnown RBP16.2■□□□□ 0.18
MCF2L-231ENST00000494043 GPRASP1Q5JY77 1395 aa16.2■□□□□ 0.18
MCF2L-231ENST00000494043 HDGFP51858 240 aaKnown RBP16.19■□□□□ 0.18
MCF2L-231ENST00000494043 LAMC1P11047 1609 aa16.19■□□□□ 0.18
MCF2L-231ENST00000494043 NBPF1Q3BBV0 1214 aa16.16■□□□□ 0.18
MCF2L-231ENST00000494043 CFAP70Q5T0N1 1121 aa16.16■□□□□ 0.18
MCF2L-231ENST00000494043 CARD11Q9BXL7 1154 aa16.16■□□□□ 0.18
MCF2L-231ENST00000494043 C14orf93Q9H972 538 aaKnown RBP16.16■□□□□ 0.18
MCF2L-231ENST00000494043 EID1Q9Y6B2 187 aa16.16■□□□□ 0.18
MCF2L-231ENST00000494043 SETBP1Q9Y6X0 1596 aa16.16■□□□□ 0.18
MCF2L-231ENST00000494043 SCAF11Q99590 1463 aaKnown RBP16.16■□□□□ 0.18
MCF2L-231ENST00000494043 PLEKHG1Q9ULL1 1385 aa16.15■□□□□ 0.18
MCF2L-231ENST00000494043 LTKP29376 864 aa16.15■□□□□ 0.18
MCF2L-231ENST00000494043 ADGRB1O14514 1584 aa16.14■□□□□ 0.17
MCF2L-231ENST00000494043 TXNDC2Q86VQ3 553 aa16.14■□□□□ 0.17
MCF2L-231ENST00000494043 NRXN3Q9Y4C0 1643 aa16.14■□□□□ 0.17
MCF2L-231ENST00000494043 USP47Q96K76 1375 aa16.13■□□□□ 0.17
MCF2L-231ENST00000494043 ALKQ9UM73 1620 aa16.13■□□□□ 0.17
MCF2L-231ENST00000494043 IQGAP1P46940 1657 aa16.13■□□□□ 0.17
MCF2L-231ENST00000494043 EIF4G2P78344 907 aaKnown RBP eCLIP16.12■□□□□ 0.17
MCF2L-231ENST00000494043 ASXL1Q8IXJ9 1541 aa16.12■□□□□ 0.17
MCF2L-231ENST00000494043 SETD1AO15047 1707 aaKnown RBP16.11■□□□□ 0.17
MCF2L-231ENST00000494043 HSPA5P11021 654 aaKnown RBP16.11■□□□□ 0.17
MCF2L-231ENST00000494043 LMTK3Q96Q04 1460 aa16.1■□□□□ 0.17
MCF2L-231ENST00000494043 ANKLE2Q86XL3 938 aa16.1■□□□□ 0.17
MCF2L-231ENST00000494043 ADAMTS13Q76LX8 1427 aa16.1■□□□□ 0.17
MCF2L-231ENST00000494043 DIP2AQ14689 1571 aa16.09■□□□□ 0.17
MCF2L-231ENST00000494043 ZNF316A6NFI3 1004 aaPredicted RBP16.08■□□□□ 0.16
MCF2L-231ENST00000494043 MED14O60244 1454 aa16.08■□□□□ 0.16
MCF2L-231ENST00000494043 POLR1AO95602 1720 aaPredicted RBP16.08■□□□□ 0.16
MCF2L-231ENST00000494043 BCANQ96GW7 911 aa16.07■□□□□ 0.16
MCF2L-231ENST00000494043 EIF3AQ14152 1382 aaKnown RBP16.06■□□□□ 0.16
MCF2L-231ENST00000494043 TMEM132EQ6IEE7 984 aa16.06■□□□□ 0.16
MCF2L-231ENST00000494043 YTHDC2Q9H6S0 1430 aaKnown RBP16.05■□□□□ 0.16
MCF2L-231ENST00000494043 HIRIP3Q9BW71 556 aaPredicted RBP16.05■□□□□ 0.16
MCF2L-231ENST00000494043 NPHP4O75161 1426 aaPredicted RBP16.04■□□□□ 0.16
MCF2L-231ENST00000494043 METP08581 1390 aa16.04■□□□□ 0.16
MCF2L-231ENST00000494043 LRPPRCP42704 1394 aaKnown RBP16.03■□□□□ 0.16
MCF2L-231ENST00000494043 ST20-MTHFSA0A0A6YYL1 179 aa16.03■□□□□ 0.16
MCF2L-231ENST00000494043 TBX22Q9Y458 520 aa16.03■□□□□ 0.16
MCF2L-231ENST00000494043 NCKAP5LQ9HCH0 1330 aa16.02■□□□□ 0.16
MCF2L-231ENST00000494043 HSPA2P54652 639 aa16.02■□□□□ 0.16
MCF2L-231ENST00000494043 SLC26A8Q96RN1 970 aa16.02■□□□□ 0.16
MCF2L-231ENST00000494043 TRAK1Q9UPV9 953 aa16.01■□□□□ 0.15
MCF2L-231ENST00000494043 ARHGEF28Q8N1W1 1705 aaKnown RBP16.01■□□□□ 0.15
MCF2L-231ENST00000494043 DLC1Q96QB1 1528 aa16■□□□□ 0.15
MCF2L-231ENST00000494043 KNDC1Q76NI1 1749 aa16■□□□□ 0.15
MCF2L-231ENST00000494043 STK26Q9P289 416 aa16■□□□□ 0.15
MCF2L-231ENST00000494043 TECPR2O15040 1411 aa16■□□□□ 0.15
MCF2L-231ENST00000494043 ABCC11Q96J66 1382 aa16■□□□□ 0.15
MCF2L-231ENST00000494043 PIK3R4Q99570 1358 aa16■□□□□ 0.15
MCF2L-231ENST00000494043 CPS1P31327 1500 aa15.99■□□□□ 0.15
MCF2L-231ENST00000494043 PTPRUQ92729 1446 aa15.98■□□□□ 0.15
MCF2L-231ENST00000494043 TESK2Q96S53 571 aa15.98■□□□□ 0.15
MCF2L-231ENST00000494043 CENPJQ9HC77 1338 aaPredicted RBP15.97■□□□□ 0.15
MCF2L-231ENST00000494043 SBNO2Q9Y2G9 1366 aa15.97■□□□□ 0.15
MCF2L-231ENST00000494043 QRICH2Q9H0J4 1663 aa15.96■□□□□ 0.15
MCF2L-231ENST00000494043 XRN1Q8IZH2 1706 aaKnown RBP15.96■□□□□ 0.15
MCF2L-231ENST00000494043 STRCQ7RTU9 1775 aa15.95■□□□□ 0.14
MCF2L-231ENST00000494043 PTCH1Q13635 1447 aa15.94■□□□□ 0.14
MCF2L-231ENST00000494043 FAM135BQ49AJ0 1406 aa15.94■□□□□ 0.14
MCF2L-231ENST00000494043 SIRT1Q96EB6 747 aa15.94■□□□□ 0.14
MCF2L-231ENST00000494043 PRAM1Q96QH2 718 aa15.94■□□□□ 0.14
MCF2L-231ENST00000494043 CCDC7Q96M83 1385 aa15.93■□□□□ 0.14
MCF2L-231ENST00000494043 C11orf95C9JLR9 678 aaPredicted RBP15.93■□□□□ 0.14
MCF2L-231ENST00000494043 WASHC2AQ641Q2 1341 aa15.93■□□□□ 0.14
MCF2L-231ENST00000494043 ROBO2Q9HCK4 1378 aa15.92■□□□□ 0.14
MCF2L-231ENST00000494043 DISP3Q9P2K9 1392 aa15.92■□□□□ 0.14
MCF2L-231ENST00000494043 TMF1P82094 1093 aa15.92■□□□□ 0.14
MCF2L-231ENST00000494043 POGKQ9P215 609 aa15.92■□□□□ 0.14
MCF2L-231ENST00000494043 AMOTL2Q9Y2J4 779 aa15.92■□□□□ 0.14
MCF2L-231ENST00000494043 KIF7Q2M1P5 1343 aa15.92■□□□□ 0.14
MCF2L-231ENST00000494043 NWD1Q149M9 1564 aa15.92■□□□□ 0.14
MCF2L-231ENST00000494043 CHD2O14647 1828 aaKnown RBP15.91■□□□□ 0.14
MCF2L-231ENST00000494043 PLEKHH1Q9ULM0 1364 aa15.91■□□□□ 0.14
MCF2L-231ENST00000494043 SLC24A1O60721 1099 aa15.91■□□□□ 0.14
MCF2L-231ENST00000494043 SAFB2Q14151 953 aaKnown RBP eCLIP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms