RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 ITGAEP38570 1179 aa12.46□□□□□ -0.41
HDAC6-234ENST00000493923 UNC13BO14795 1591 aa12.46□□□□□ -0.42
HDAC6-234ENST00000493923 TET3O43151 1660 aa12.45□□□□□ -0.42
HDAC6-234ENST00000493923 ADGRB3O60242 1522 aa12.44□□□□□ -0.42
HDAC6-234ENST00000493923 E9PCH4 1651 aa12.44□□□□□ -0.42
HDAC6-234ENST00000493923 KDM5AP29375 1690 aaKnown RBP12.43□□□□□ -0.42
HDAC6-234ENST00000493923 CACNB1Q02641 598 aaPredicted RBP12.43□□□□□ -0.42
HDAC6-234ENST00000493923 GCC2Q8IWJ2 1684 aa12.42□□□□□ -0.42
HDAC6-234ENST00000493923 ROCK1Q13464 1354 aa12.42□□□□□ -0.42
HDAC6-234ENST00000493923 RBM33Q96EV2 1170 aaKnown RBP12.41□□□□□ -0.42
HDAC6-234ENST00000493923 SLC26A8Q96RN1 970 aa12.41□□□□□ -0.42
HDAC6-234ENST00000493923 STAG3Q9UJ98 1225 aa12.41□□□□□ -0.42
HDAC6-234ENST00000493923 TMEM131LA2VDJ0 1609 aa12.4□□□□□ -0.42
HDAC6-234ENST00000493923 IQGAP3Q86VI3 1631 aa12.4□□□□□ -0.42
HDAC6-234ENST00000493923 ZFYVE9O95405 1425 aa12.4□□□□□ -0.42
HDAC6-234ENST00000493923 TOM1O60784 492 aa12.4□□□□□ -0.42
HDAC6-234ENST00000493923 EID1Q9Y6B2 187 aa12.4□□□□□ -0.42
HDAC6-234ENST00000493923 RPRD2Q5VT52 1461 aaKnown RBP12.4□□□□□ -0.43
HDAC6-234ENST00000493923 NUTM2DQ5VT03 806 aaPredicted RBP12.38□□□□□ -0.43
HDAC6-234ENST00000493923 SLC52A1Q9NWF4 448 aa12.38□□□□□ -0.43
HDAC6-234ENST00000493923 RIMS2Q9UQ26 1411 aa12.37□□□□□ -0.43
HDAC6-234ENST00000493923 NUP155O75694 1391 aa12.37□□□□□ -0.43
HDAC6-234ENST00000493923 MED1Q15648 1581 aaPredicted RBP12.36□□□□□ -0.43
HDAC6-234ENST00000493923 TMEM94Q12767 1356 aa12.36□□□□□ -0.43
HDAC6-234ENST00000493923 RRBP1Q9P2E9 1410 aaKnown RBP12.36□□□□□ -0.43
HDAC6-234ENST00000493923 CHGAP10645 457 aaKnown RBP12.35□□□□□ -0.43
HDAC6-234ENST00000493923 KCNA6P17658 529 aa12.35□□□□□ -0.43
HDAC6-234ENST00000493923 NWD1Q149M9 1564 aa12.35□□□□□ -0.43
HDAC6-234ENST00000493923 CHD2O14647 1828 aaKnown RBP12.34□□□□□ -0.43
HDAC6-234ENST00000493923 PLEKHG1Q9ULL1 1385 aa12.33□□□□□ -0.44
HDAC6-234ENST00000493923 RNF39Q9H2S5 420 aa12.33□□□□□ -0.44
HDAC6-234ENST00000493923 ADAMTS13Q76LX8 1427 aa12.33□□□□□ -0.44
HDAC6-234ENST00000493923 NAIPQ13075 1403 aa12.32□□□□□ -0.44
HDAC6-234ENST00000493923 PROSER2Q86WR7 435 aaPredicted RBP12.32□□□□□ -0.44
HDAC6-234ENST00000493923 BCANQ96GW7 911 aa12.31□□□□□ -0.44
HDAC6-234ENST00000493923 SPHKAPQ2M3C7 1700 aa12.31□□□□□ -0.44
HDAC6-234ENST00000493923 SOCS7O14512 581 aa12.3□□□□□ -0.44
HDAC6-234ENST00000493923 PTPRUQ92729 1446 aa12.29□□□□□ -0.44
HDAC6-234ENST00000493923 NKTRP30414 1462 aaKnown RBP12.29□□□□□ -0.44
HDAC6-234ENST00000493923 PPP1R15AO75807 674 aaPredicted RBP12.29□□□□□ -0.44
HDAC6-234ENST00000493923 CLTCL1P53675 1640 aa12.29□□□□□ -0.44
HDAC6-234ENST00000493923 NRXN3Q9Y4C0 1643 aa12.29□□□□□ -0.44
HDAC6-234ENST00000493923 ROBO1Q9Y6N7 1651 aa12.28□□□□□ -0.44
HDAC6-234ENST00000493923 TBX22Q9Y458 520 aa12.27□□□□□ -0.45
HDAC6-234ENST00000493923 FAM135BQ49AJ0 1406 aa12.27□□□□□ -0.45
HDAC6-234ENST00000493923 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.25□□□□□ -0.45
HDAC6-234ENST00000493923 ZEB1P37275 1124 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-234ENST00000493923 RGS17Q9UGC6 210 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-234ENST00000493923 DIP2AQ14689 1571 aa12.23□□□□□ -0.45
HDAC6-234ENST00000493923 TRPM2O94759 1503 aa12.23□□□□□ -0.45
HDAC6-234ENST00000493923 NEXMIFQ5QGS0 1516 aa12.23□□□□□ -0.45
HDAC6-234ENST00000493923 HFM1A2PYH4 1435 aa12.23□□□□□ -0.45
HDAC6-234ENST00000493923 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.23□□□□□ -0.45
HDAC6-234ENST00000493923 METP08581 1390 aa12.22□□□□□ -0.45
HDAC6-234ENST00000493923 MSH6P52701 1360 aa12.22□□□□□ -0.45
HDAC6-234ENST00000493923 HDGFP51858 240 aaKnown RBP12.22□□□□□ -0.45
HDAC6-234ENST00000493923 SLAIN2Q9P270 581 aa12.22□□□□□ -0.45
HDAC6-234ENST00000493923 AMOTL2Q9Y2J4 779 aa12.22□□□□□ -0.45
HDAC6-234ENST00000493923 XRN1Q8IZH2 1706 aaKnown RBP12.22□□□□□ -0.45
HDAC6-234ENST00000493923 SETBP1Q9Y6X0 1596 aa12.22□□□□□ -0.45
HDAC6-234ENST00000493923 NPM3O75607 178 aaKnown RBP12.21□□□□□ -0.45
HDAC6-234ENST00000493923 C1QBPQ07021 282 aaKnown RBP12.21□□□□□ -0.45
HDAC6-234ENST00000493923 ZNF326Q5BKZ1 582 aaKnown RBP12.21□□□□□ -0.45
HDAC6-234ENST00000493923 TRIM52Q96A61 297 aa12.21□□□□□ -0.45
HDAC6-234ENST00000493923 KIF1BO60333 1816 aa12.2□□□□□ -0.46
HDAC6-234ENST00000493923 PHLPP1O60346 1717 aa12.2□□□□□ -0.46
HDAC6-234ENST00000493923 PIK3R4Q99570 1358 aa12.19□□□□□ -0.46
HDAC6-234ENST00000493923 SETD1AO15047 1707 aaKnown RBP12.18□□□□□ -0.46
HDAC6-234ENST00000493923 COL16A1Q07092 1604 aaPredicted RBP12.18□□□□□ -0.46
HDAC6-234ENST00000493923 SLC4A1APQ9BWU0 796 aaKnown RBP12.17□□□□□ -0.46
HDAC6-234ENST00000493923 C14orf37Q86TY3 774 aa12.16□□□□□ -0.46
HDAC6-234ENST00000493923 NCOA3Q9Y6Q9 1424 aa12.16□□□□□ -0.46
HDAC6-234ENST00000493923 POTEAQ6S8J7 498 aa12.15□□□□□ -0.46
HDAC6-234ENST00000493923 C19orf44Q9H6X5 657 aa12.15□□□□□ -0.46
HDAC6-234ENST00000493923 PPLO60437 1756 aa12.15□□□□□ -0.46
HDAC6-234ENST00000493923 NALCNQ8IZF0 1738 aa12.14□□□□□ -0.47
HDAC6-234ENST00000493923 BRINP3Q76B58 766 aa12.14□□□□□ -0.47
HDAC6-234ENST00000493923 LRP6O75581 1613 aa12.14□□□□□ -0.47
HDAC6-234ENST00000493923 AHDC1Q5TGY3 1603 aaPredicted RBP12.13□□□□□ -0.47
HDAC6-234ENST00000493923 MST1RQ04912 1400 aa12.12□□□□□ -0.47
HDAC6-234ENST00000493923 ATF3P18847 181 aa12.12□□□□□ -0.47
HDAC6-234ENST00000493923 CADPS2Q86UW7 1296 aa12.12□□□□□ -0.47
HDAC6-234ENST00000493923 DDX17Q92841 729 aaKnown RBP12.12□□□□□ -0.47
HDAC6-234ENST00000493923 ROBO2Q9HCK4 1378 aa12.12□□□□□ -0.47
HDAC6-234ENST00000493923 JCADQ9P266 1359 aa12.11□□□□□ -0.47
HDAC6-234ENST00000493923 PCGF6Q9BYE7 350 aa12.11□□□□□ -0.47
HDAC6-234ENST00000493923 SPATA31E1Q6ZUB1 1445 aa12.11□□□□□ -0.47
HDAC6-234ENST00000493923 ADGRL3Q9HAR2 1447 aa12.11□□□□□ -0.47
HDAC6-234ENST00000493923 ADGRF5Q8IZF2 1346 aa12.11□□□□□ -0.47
HDAC6-234ENST00000493923 MPHOSPH9Q99550 1183 aa12.1□□□□□ -0.47
HDAC6-234ENST00000493923 ASXL1Q8IXJ9 1541 aa12.1□□□□□ -0.47
HDAC6-234ENST00000493923 IFT172Q9UG01 1749 aa12.09□□□□□ -0.47
HDAC6-234ENST00000493923 DCCP43146 1447 aa12.09□□□□□ -0.47
HDAC6-234ENST00000493923 NHSL1Q5SYE7 1610 aa12.08□□□□□ -0.48
HDAC6-234ENST00000493923 SHPRHQ149N8 1683 aa12.08□□□□□ -0.48
HDAC6-234ENST00000493923 RGL3Q3MIN7 710 aa12.08□□□□□ -0.48
HDAC6-234ENST00000493923 VGFO15240 615 aaPredicted RBP12.07□□□□□ -0.48
HDAC6-234ENST00000493923 PTCH1Q13635 1447 aa12.07□□□□□ -0.48
HDAC6-234ENST00000493923 RPGRIP1LQ68CZ1 1315 aa12.07□□□□□ -0.48
HDAC6-234ENST00000493923 SETD5Q9C0A6 1442 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms