RNA–Protein interactions for RNA: ENST00000491685.5

TMEM39A-211, Transcript of transmembrane protein 39A, humanhuman

TSL 5

Gene TMEM39A, Length 852 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-211ENST00000491685 ZFYVE9O95405 1425 aa16.92■□□□□ 0.3
TMEM39A-211ENST00000491685 SENP3Q9H4L4 574 aaPredicted RBP16.9■□□□□ 0.3
TMEM39A-211ENST00000491685 CHD2O14647 1828 aaKnown RBP16.89■□□□□ 0.29
TMEM39A-211ENST00000491685 ITGAEP38570 1179 aa16.89■□□□□ 0.29
TMEM39A-211ENST00000491685 SLC26A8Q96RN1 970 aa16.89■□□□□ 0.29
TMEM39A-211ENST00000491685 SPHKAPQ2M3C7 1700 aa16.88■□□□□ 0.29
TMEM39A-211ENST00000491685 SLC52A1Q9NWF4 448 aa16.88■□□□□ 0.29
TMEM39A-211ENST00000491685 RIMS2Q9UQ26 1411 aa16.87■□□□□ 0.29
TMEM39A-211ENST00000491685 RGS17Q9UGC6 210 aaPredicted RBP16.87■□□□□ 0.29
TMEM39A-211ENST00000491685 TMEM94Q12767 1356 aa16.86■□□□□ 0.29
TMEM39A-211ENST00000491685 NKTRP30414 1462 aaKnown RBP16.86■□□□□ 0.29
TMEM39A-211ENST00000491685 ROBO1Q9Y6N7 1651 aa16.85■□□□□ 0.29
TMEM39A-211ENST00000491685 RBM33Q96EV2 1170 aaKnown RBP16.85■□□□□ 0.29
TMEM39A-211ENST00000491685 PLEKHG1Q9ULL1 1385 aa16.84■□□□□ 0.29
TMEM39A-211ENST00000491685 KCNA6P17658 529 aa16.83■□□□□ 0.28
TMEM39A-211ENST00000491685 NUP155O75694 1391 aa16.82■□□□□ 0.28
TMEM39A-211ENST00000491685 ADAMTS13Q76LX8 1427 aa16.81■□□□□ 0.28
TMEM39A-211ENST00000491685 RRBP1Q9P2E9 1410 aaKnown RBP16.81■□□□□ 0.28
TMEM39A-211ENST00000491685 NRXN3Q9Y4C0 1643 aa16.81■□□□□ 0.28
TMEM39A-211ENST00000491685 FAM135BQ49AJ0 1406 aa16.8■□□□□ 0.28
TMEM39A-211ENST00000491685 NUTM2DQ5VT03 806 aaPredicted RBP16.8■□□□□ 0.28
TMEM39A-211ENST00000491685 CLTCL1P53675 1640 aa16.8■□□□□ 0.28
TMEM39A-211ENST00000491685 DIP2AQ14689 1571 aa16.8■□□□□ 0.28
TMEM39A-211ENST00000491685 CHGAP10645 457 aaKnown RBP16.79■□□□□ 0.28
TMEM39A-211ENST00000491685 SETD1AO15047 1707 aaKnown RBP16.79■□□□□ 0.28
TMEM39A-211ENST00000491685 PROSER2Q86WR7 435 aaPredicted RBP16.78■□□□□ 0.28
TMEM39A-211ENST00000491685 BCANQ96GW7 911 aa16.78■□□□□ 0.28
TMEM39A-211ENST00000491685 PPP1R15AO75807 674 aaPredicted RBP16.77■□□□□ 0.28
TMEM39A-211ENST00000491685 NAIPQ13075 1403 aa16.76■□□□□ 0.27
TMEM39A-211ENST00000491685 PHLPP1O60346 1717 aa16.76■□□□□ 0.27
TMEM39A-211ENST00000491685 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.76■□□□□ 0.27
TMEM39A-211ENST00000491685 XRN1Q8IZH2 1706 aaKnown RBP16.75■□□□□ 0.27
TMEM39A-211ENST00000491685 POTEAQ6S8J7 498 aa16.74■□□□□ 0.27
TMEM39A-211ENST00000491685 TRPM2O94759 1503 aa16.74■□□□□ 0.27
TMEM39A-211ENST00000491685 SETBP1Q9Y6X0 1596 aa16.73■□□□□ 0.27
TMEM39A-211ENST00000491685 KIF1BO60333 1816 aa16.73■□□□□ 0.27
TMEM39A-211ENST00000491685 PTPRUQ92729 1446 aa16.73■□□□□ 0.27
TMEM39A-211ENST00000491685 NEXMIFQ5QGS0 1516 aa16.72■□□□□ 0.27
TMEM39A-211ENST00000491685 TBX22Q9Y458 520 aa16.72■□□□□ 0.27
TMEM39A-211ENST00000491685 MSH6P52701 1360 aa16.72■□□□□ 0.27
TMEM39A-211ENST00000491685 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.71■□□□□ 0.27
TMEM39A-211ENST00000491685 COL16A1Q07092 1604 aaPredicted RBP16.7■□□□□ 0.26
TMEM39A-211ENST00000491685 HDGFP51858 240 aaKnown RBP16.69■□□□□ 0.26
TMEM39A-211ENST00000491685 PIK3R4Q99570 1358 aa16.67■□□□□ 0.26
TMEM39A-211ENST00000491685 HFM1A2PYH4 1435 aa16.67■□□□□ 0.26
TMEM39A-211ENST00000491685 NALCNQ8IZF0 1738 aa16.66■□□□□ 0.26
TMEM39A-211ENST00000491685 NCOA3Q9Y6Q9 1424 aa16.65■□□□□ 0.26
TMEM39A-211ENST00000491685 PPLO60437 1756 aa16.64■□□□□ 0.25
TMEM39A-211ENST00000491685 AHDC1Q5TGY3 1603 aaPredicted RBP16.64■□□□□ 0.25
TMEM39A-211ENST00000491685 SLAIN2Q9P270 581 aa16.64■□□□□ 0.25
TMEM39A-211ENST00000491685 METP08581 1390 aa16.64■□□□□ 0.25
TMEM39A-211ENST00000491685 ZNF326Q5BKZ1 582 aaKnown RBP16.62■□□□□ 0.25
TMEM39A-211ENST00000491685 AMOTL2Q9Y2J4 779 aa16.62■□□□□ 0.25
TMEM39A-211ENST00000491685 JCADQ9P266 1359 aa16.62■□□□□ 0.25
TMEM39A-211ENST00000491685 C14orf37Q86TY3 774 aa16.61■□□□□ 0.25
TMEM39A-211ENST00000491685 SHPRHQ149N8 1683 aa16.61■□□□□ 0.25
TMEM39A-211ENST00000491685 LRP6O75581 1613 aa16.6■□□□□ 0.25
TMEM39A-211ENST00000491685 NHSL1Q5SYE7 1610 aa16.6■□□□□ 0.25
TMEM39A-211ENST00000491685 ASXL1Q8IXJ9 1541 aa16.58■□□□□ 0.24
TMEM39A-211ENST00000491685 IFT172Q9UG01 1749 aa16.58■□□□□ 0.24
TMEM39A-211ENST00000491685 DCCP43146 1447 aa16.57■□□□□ 0.24
TMEM39A-211ENST00000491685 MST1RQ04912 1400 aa16.57■□□□□ 0.24
TMEM39A-211ENST00000491685 TRIM52Q96A61 297 aa16.57■□□□□ 0.24
TMEM39A-211ENST00000491685 C19orf44Q9H6X5 657 aa16.57■□□□□ 0.24
TMEM39A-211ENST00000491685 ADGRL3Q9HAR2 1447 aa16.55■□□□□ 0.24
TMEM39A-211ENST00000491685 ATF3P18847 181 aa16.55■□□□□ 0.24
TMEM39A-211ENST00000491685 CADPS2Q86UW7 1296 aa16.55■□□□□ 0.24
TMEM39A-211ENST00000491685 FOXD1Q16676 465 aa16.54■□□□□ 0.24
TMEM39A-211ENST00000491685 SPATA31A6Q5VVP1 1343 aa16.53■□□□□ 0.24
TMEM39A-211ENST00000491685 BRINP3Q76B58 766 aa16.53■□□□□ 0.24
TMEM39A-211ENST00000491685 SLC4A1APQ9BWU0 796 aaKnown RBP16.53■□□□□ 0.24
TMEM39A-211ENST00000491685 UPF1Q92900 1129 aaKnown RBP eCLIP16.52■□□□□ 0.24
TMEM39A-211ENST00000491685 PTCH1Q13635 1447 aa16.51■□□□□ 0.23
TMEM39A-211ENST00000491685 ZNF772Q68DY9 489 aaPredicted RBP16.5■□□□□ 0.23
TMEM39A-211ENST00000491685 ROBO2Q9HCK4 1378 aa16.5■□□□□ 0.23
TMEM39A-211ENST00000491685 CDK12Q9NYV4 1490 aaPredicted RBP16.49■□□□□ 0.23
TMEM39A-211ENST00000491685 PRAG1Q86YV5 1406 aa16.49■□□□□ 0.23
TMEM39A-211ENST00000491685 LAMC1P11047 1609 aa16.48■□□□□ 0.23
TMEM39A-211ENST00000491685 SPATA31E1Q6ZUB1 1445 aa16.47■□□□□ 0.23
TMEM39A-211ENST00000491685 KNDC1Q76NI1 1749 aa16.46■□□□□ 0.23
TMEM39A-211ENST00000491685 MEX3CQ5U5Q3 659 aaKnown RBP16.46■□□□□ 0.23
TMEM39A-211ENST00000491685 DDX17Q92841 729 aaKnown RBP16.46■□□□□ 0.23
TMEM39A-211ENST00000491685 CCDC144AA2RUR9 1427 aa16.45■□□□□ 0.22
TMEM39A-211ENST00000491685 SETD5Q9C0A6 1442 aa16.45■□□□□ 0.22
TMEM39A-211ENST00000491685 VGFO15240 615 aaPredicted RBP16.45■□□□□ 0.22
TMEM39A-211ENST00000491685 C1orf167Q5SNV9 1468 aa16.45■□□□□ 0.22
TMEM39A-211ENST00000491685 RPGRIP1LQ68CZ1 1315 aa16.45■□□□□ 0.22
TMEM39A-211ENST00000491685 ADGRF5Q8IZF2 1346 aa16.44■□□□□ 0.22
TMEM39A-211ENST00000491685 CDC42BPGQ6DT37 1551 aa16.43■□□□□ 0.22
TMEM39A-211ENST00000491685 MPHOSPH9Q99550 1183 aa16.43■□□□□ 0.22
TMEM39A-211ENST00000491685 RXRBP28702 533 aa16.41■□□□□ 0.22
TMEM39A-211ENST00000491685 PNPLA6Q8IY17 1366 aa16.4■□□□□ 0.22
TMEM39A-211ENST00000491685 PIK3C2GO75747 1445 aa16.4■□□□□ 0.22
TMEM39A-211ENST00000491685 NUTM2BA6NNL0 878 aaPredicted RBP16.4■□□□□ 0.22
TMEM39A-211ENST00000491685 NUTM2EB1AL46 878 aaPredicted RBP16.4■□□□□ 0.22
TMEM39A-211ENST00000491685 NUTM2AQ8IVF1 878 aaPredicted RBP16.4■□□□□ 0.22
TMEM39A-211ENST00000491685 RGL3Q3MIN7 710 aa16.39■□□□□ 0.21
TMEM39A-211ENST00000491685 ORAI2Q96SN7 254 aa16.38■□□□□ 0.21
TMEM39A-211ENST00000491685 FMN2Q9NZ56 1722 aa16.38■□□□□ 0.21
TMEM39A-211ENST00000491685 COL22A1Q8NFW1 1626 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms