RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 PLEKHG1Q9ULL1 1385 aa37.61■■■■□ 3.61
HMGN1-217ENST00000489072 SENP3Q9H4L4 574 aaPredicted RBP37.6■■■■□ 3.61
HMGN1-217ENST00000489072 ALKQ9UM73 1620 aa37.58■■■■□ 3.61
HMGN1-217ENST00000489072 PPP1R15AO75807 674 aaPredicted RBP37.58■■■■□ 3.61
HMGN1-217ENST00000489072 XIRP1Q702N8 1843 aaKnown RBP37.58■■■■□ 3.61
HMGN1-217ENST00000489072 TRPM2O94759 1503 aa37.57■■■■□ 3.61
HMGN1-217ENST00000489072 HDGFP51858 240 aaKnown RBP37.57■■■■□ 3.6
HMGN1-217ENST00000489072 CLTCL1P53675 1640 aa37.57■■■■□ 3.6
HMGN1-217ENST00000489072 BCANQ96GW7 911 aa37.56■■■■□ 3.6
HMGN1-217ENST00000489072 NUTM2DQ5VT03 806 aaPredicted RBP37.55■■■■□ 3.6
HMGN1-217ENST00000489072 ABCF1Q8NE71 845 aaKnown RBP eCLIP37.55■■■■□ 3.6
HMGN1-217ENST00000489072 TOM1O60784 492 aa37.54■■■■□ 3.6
HMGN1-217ENST00000489072 KCNA6P17658 529 aa37.52■■■■□ 3.6
HMGN1-217ENST00000489072 NWD1Q149M9 1564 aa37.51■■■■□ 3.59
HMGN1-217ENST00000489072 SLC4A1APQ9BWU0 796 aaKnown RBP37.5■■■■□ 3.59
HMGN1-217ENST00000489072 PIP4K2BP78356 416 aa37.49■■■■□ 3.59
HMGN1-217ENST00000489072 SCAF1Q9H7N4 1312 aaKnown RBP37.47■■■■□ 3.59
HMGN1-217ENST00000489072 CHD2O14647 1828 aaKnown RBP37.47■■■■□ 3.59
HMGN1-217ENST00000489072 ADAMTS13Q76LX8 1427 aa37.46■■■■□ 3.59
HMGN1-217ENST00000489072 KIF1BO60333 1816 aa37.45■■■■□ 3.59
HMGN1-217ENST00000489072 TBX22Q9Y458 520 aa37.43■■■■□ 3.58
HMGN1-217ENST00000489072 NKTRP30414 1462 aaKnown RBP37.42■■■■□ 3.58
HMGN1-217ENST00000489072 TMEM94Q12767 1356 aa37.42■■■■□ 3.58
HMGN1-217ENST00000489072 DIP2AQ14689 1571 aa37.41■■■■□ 3.58
HMGN1-217ENST00000489072 ZNF326Q5BKZ1 582 aaKnown RBP37.4■■■■□ 3.58
HMGN1-217ENST00000489072 PROSER2Q86WR7 435 aaPredicted RBP37.38■■■■□ 3.57
HMGN1-217ENST00000489072 NEXMIFQ5QGS0 1516 aa37.37■■■■□ 3.57
HMGN1-217ENST00000489072 FOXD1Q16676 465 aa37.37■■■■□ 3.57
HMGN1-217ENST00000489072 NRXN3Q9Y4C0 1643 aa37.36■■■■□ 3.57
HMGN1-217ENST00000489072 RBM33Q96EV2 1170 aaKnown RBP37.36■■■■□ 3.57
HMGN1-217ENST00000489072 SETD5Q9C0A6 1442 aa37.36■■■■□ 3.57
HMGN1-217ENST00000489072 HSPA1LP34931 641 aa37.34■■■■□ 3.57
HMGN1-217ENST00000489072 SETBP1Q9Y6X0 1596 aa37.33■■■■□ 3.57
HMGN1-217ENST00000489072 MPHOSPH9Q99550 1183 aa37.31■■■■□ 3.56
HMGN1-217ENST00000489072 PIK3R4Q99570 1358 aa37.29■■■■□ 3.56
HMGN1-217ENST00000489072 PTPRUQ92729 1446 aa37.25■■■■□ 3.55
HMGN1-217ENST00000489072 RAB3GAP2Q9H2M9 1393 aa37.23■■■■□ 3.55
HMGN1-217ENST00000489072 ACIN1Q9UKV3 1341 aaKnown RBP37.19■■■■□ 3.54
HMGN1-217ENST00000489072 PPLO60437 1756 aa37.19■■■■□ 3.54
HMGN1-217ENST00000489072 AMOTL2Q9Y2J4 779 aa37.18■■■■□ 3.54
HMGN1-217ENST00000489072 CCDC144AA2RUR9 1427 aa37.18■■■■□ 3.54
HMGN1-217ENST00000489072 MSH6P52701 1360 aa37.17■■■■□ 3.54
HMGN1-217ENST00000489072 XRN1Q8IZH2 1706 aaKnown RBP37.17■■■■□ 3.54
HMGN1-217ENST00000489072 METP08581 1390 aa37.17■■■■□ 3.54
HMGN1-217ENST00000489072 DISP3Q9P2K9 1392 aa37.17■■■■□ 3.54
HMGN1-217ENST00000489072 RPGRIP1LQ68CZ1 1315 aa37.15■■■■□ 3.54
HMGN1-217ENST00000489072 NCOA3Q9Y6Q9 1424 aa37.14■■■■□ 3.54
HMGN1-217ENST00000489072 FAM135BQ49AJ0 1406 aa37.12■■■■□ 3.53
HMGN1-217ENST00000489072 VGFO15240 615 aaPredicted RBP37.12■■■■□ 3.53
HMGN1-217ENST00000489072 SPATA31E1Q6ZUB1 1445 aa37.1■■■■□ 3.53
HMGN1-217ENST00000489072 SETD1AO15047 1707 aaKnown RBP37.1■■■■□ 3.53
HMGN1-217ENST00000489072 ROBO1Q9Y6N7 1651 aa37.09■■■■□ 3.53
HMGN1-217ENST00000489072 SIPA1L2Q9P2F8 1722 aaPredicted RBP37.07■■■■□ 3.52
HMGN1-217ENST00000489072 C14orf37Q86TY3 774 aa37.05■■■■□ 3.52
HMGN1-217ENST00000489072 IFT172Q9UG01 1749 aa37.05■■■■□ 3.52
HMGN1-217ENST00000489072 RGL3Q3MIN7 710 aa37.03■■■■□ 3.52
HMGN1-217ENST00000489072 SLAIN2Q9P270 581 aa37.03■■■■□ 3.52
HMGN1-217ENST00000489072 C19orf44Q9H6X5 657 aa37■■■■□ 3.51
HMGN1-217ENST00000489072 MED1Q15648 1581 aaPredicted RBP37■■■■□ 3.51
HMGN1-217ENST00000489072 ADGRF5Q8IZF2 1346 aa36.97■■■■□ 3.51
HMGN1-217ENST00000489072 HRCP23327 699 aa36.95■■■■□ 3.51
HMGN1-217ENST00000489072 ANKRD30BQ9BXX2 1392 aa36.93■■■■□ 3.5
HMGN1-217ENST00000489072 CADPS2Q86UW7 1296 aa36.93■■■■□ 3.5
HMGN1-217ENST00000489072 ATF3P18847 181 aa36.92■■■■□ 3.5
HMGN1-217ENST00000489072 ILDR2Q71H61 639 aa36.91■■■■□ 3.5
HMGN1-217ENST00000489072 DCCP43146 1447 aa36.89■■■■□ 3.5
HMGN1-217ENST00000489072 PTCH1Q13635 1447 aa36.89■■■■□ 3.5
HMGN1-217ENST00000489072 NALCNQ8IZF0 1738 aa36.89■■■■□ 3.5
HMGN1-217ENST00000489072 PRAG1Q86YV5 1406 aa36.87■■■■□ 3.49
HMGN1-217ENST00000489072 ROBO2Q9HCK4 1378 aa36.87■■■■□ 3.49
HMGN1-217ENST00000489072 ADGRL3Q9HAR2 1447 aa36.86■■■■□ 3.49
HMGN1-217ENST00000489072 PHLPP1O60346 1717 aa36.86■■■■□ 3.49
HMGN1-217ENST00000489072 PIK3C2GO75747 1445 aa36.84■■■■□ 3.49
HMGN1-217ENST00000489072 ASXL1Q8IXJ9 1541 aa36.8■■■■□ 3.48
HMGN1-217ENST00000489072 MST1RQ04912 1400 aa36.79■■■■□ 3.48
HMGN1-217ENST00000489072 COL16A1Q07092 1604 aaPredicted RBP36.77■■■■□ 3.48
HMGN1-217ENST00000489072 NRXN1Q9ULB1 1477 aa36.77■■■■□ 3.48
HMGN1-217ENST00000489072 MYOM2P54296 1465 aa36.76■■■■□ 3.48
HMGN1-217ENST00000489072 AHDC1Q5TGY3 1603 aaPredicted RBP36.75■■■■□ 3.47
HMGN1-217ENST00000489072 BRINP3Q76B58 766 aa36.75■■■■□ 3.47
HMGN1-217ENST00000489072 TMEM132EQ6IEE7 984 aa36.72■■■■□ 3.47
HMGN1-217ENST00000489072 LRPPRCP42704 1394 aaKnown RBP36.71■■■■□ 3.47
HMGN1-217ENST00000489072 TECPR2O15040 1411 aa36.7■■■■□ 3.47
HMGN1-217ENST00000489072 KNDC1Q76NI1 1749 aa36.7■■■■□ 3.47
HMGN1-217ENST00000489072 STK26Q9P289 416 aa36.69■■■■□ 3.46
HMGN1-217ENST00000489072 C14orf93Q9H972 538 aaKnown RBP36.67■■■■□ 3.46
HMGN1-217ENST00000489072 LAMC1P11047 1609 aa36.66■■■■□ 3.46
HMGN1-217ENST00000489072 ABCC11Q96J66 1382 aa36.66■■■■□ 3.46
HMGN1-217ENST00000489072 JCADQ9P266 1359 aa36.66■■■■□ 3.46
HMGN1-217ENST00000489072 PHF23Q9BUL5 403 aaPredicted RBP36.65■■■■□ 3.46
HMGN1-217ENST00000489072 CFAP70Q5T0N1 1121 aa36.64■■■■□ 3.46
HMGN1-217ENST00000489072 YTHDC2Q9H6S0 1430 aaKnown RBP36.64■■■■□ 3.46
HMGN1-217ENST00000489072 NHSL1Q5SYE7 1610 aa36.63■■■■□ 3.45
HMGN1-217ENST00000489072 C1orf167Q5SNV9 1468 aa36.63■■■■□ 3.45
HMGN1-217ENST00000489072 WAPLQ7Z5K2 1190 aa36.61■■■■□ 3.45
HMGN1-217ENST00000489072 CDC42BPGQ6DT37 1551 aa36.59■■■■□ 3.45
HMGN1-217ENST00000489072 PLEKHH1Q9ULM0 1364 aa36.59■■■■□ 3.45
HMGN1-217ENST00000489072 DHX57Q6P158 1386 aaKnown RBP36.56■■■■□ 3.44
HMGN1-217ENST00000489072 SHPRHQ149N8 1683 aa36.56■■■■□ 3.44
HMGN1-217ENST00000489072 DCAF11Q8TEB1 546 aa36.56■■■■□ 3.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms