RNA–Protein interactions for RNA: ENST00000488494.5

ITGB1-215, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-215ENST00000488494 PLEKHG1Q9ULL1 1385 aa26.71■■□□□ 1.87
ITGB1-215ENST00000488494 PPP1R15AO75807 674 aaPredicted RBP26.71■■□□□ 1.87
ITGB1-215ENST00000488494 TRIM52Q96A61 297 aa26.7■■□□□ 1.86
ITGB1-215ENST00000488494 SLC26A8Q96RN1 970 aa26.7■■□□□ 1.86
ITGB1-215ENST00000488494 SENP3Q9H4L4 574 aaPredicted RBP26.7■■□□□ 1.86
ITGB1-215ENST00000488494 NWD1Q149M9 1564 aa26.68■■□□□ 1.86
ITGB1-215ENST00000488494 ALKQ9UM73 1620 aa26.68■■□□□ 1.86
ITGB1-215ENST00000488494 BCANQ96GW7 911 aa26.67■■□□□ 1.86
ITGB1-215ENST00000488494 XIRP1Q702N8 1843 aaKnown RBP26.65■■□□□ 1.86
ITGB1-215ENST00000488494 HDGFP51858 240 aaKnown RBP26.64■■□□□ 1.86
ITGB1-215ENST00000488494 NUTM2DQ5VT03 806 aaPredicted RBP26.64■■□□□ 1.86
ITGB1-215ENST00000488494 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.64■■□□□ 1.86
ITGB1-215ENST00000488494 SCAF1Q9H7N4 1312 aaKnown RBP26.64■■□□□ 1.85
ITGB1-215ENST00000488494 TOM1O60784 492 aa26.63■■□□□ 1.85
ITGB1-215ENST00000488494 DIP2AQ14689 1571 aa26.63■■□□□ 1.85
ITGB1-215ENST00000488494 NKTRP30414 1462 aaKnown RBP26.62■■□□□ 1.85
ITGB1-215ENST00000488494 PIP4K2BP78356 416 aa26.61■■□□□ 1.85
ITGB1-215ENST00000488494 SLC4A1APQ9BWU0 796 aaKnown RBP26.61■■□□□ 1.85
ITGB1-215ENST00000488494 ADAMTS13Q76LX8 1427 aa26.59■■□□□ 1.85
ITGB1-215ENST00000488494 KCNA6P17658 529 aa26.59■■□□□ 1.85
ITGB1-215ENST00000488494 KIF1BO60333 1816 aa26.58■■□□□ 1.85
ITGB1-215ENST00000488494 NEXMIFQ5QGS0 1516 aa26.57■■□□□ 1.84
ITGB1-215ENST00000488494 TMEM94Q12767 1356 aa26.57■■□□□ 1.84
ITGB1-215ENST00000488494 CHD2O14647 1828 aaKnown RBP26.55■■□□□ 1.84
ITGB1-215ENST00000488494 NRXN3Q9Y4C0 1643 aa26.55■■□□□ 1.84
ITGB1-215ENST00000488494 ZNF326Q5BKZ1 582 aaKnown RBP26.55■■□□□ 1.84
ITGB1-215ENST00000488494 SETBP1Q9Y6X0 1596 aa26.54■■□□□ 1.84
ITGB1-215ENST00000488494 SETD5Q9C0A6 1442 aa26.52■■□□□ 1.84
ITGB1-215ENST00000488494 TBX22Q9Y458 520 aa26.52■■□□□ 1.84
ITGB1-215ENST00000488494 PROSER2Q86WR7 435 aaPredicted RBP26.51■■□□□ 1.83
ITGB1-215ENST00000488494 FOXD1Q16676 465 aa26.5■■□□□ 1.83
ITGB1-215ENST00000488494 RBM33Q96EV2 1170 aaKnown RBP26.5■■□□□ 1.83
ITGB1-215ENST00000488494 HSPA1LP34931 641 aa26.48■■□□□ 1.83
ITGB1-215ENST00000488494 PIK3R4Q99570 1358 aa26.47■■□□□ 1.83
ITGB1-215ENST00000488494 MPHOSPH9Q99550 1183 aa26.46■■□□□ 1.83
ITGB1-215ENST00000488494 RAB3GAP2Q9H2M9 1393 aa26.46■■□□□ 1.83
ITGB1-215ENST00000488494 CCDC144AA2RUR9 1427 aa26.44■■□□□ 1.82
ITGB1-215ENST00000488494 XRN1Q8IZH2 1706 aaKnown RBP26.44■■□□□ 1.82
ITGB1-215ENST00000488494 PTPRUQ92729 1446 aa26.43■■□□□ 1.82
ITGB1-215ENST00000488494 MSH6P52701 1360 aa26.42■■□□□ 1.82
ITGB1-215ENST00000488494 PPLO60437 1756 aa26.41■■□□□ 1.82
ITGB1-215ENST00000488494 DISP3Q9P2K9 1392 aa26.4■■□□□ 1.82
ITGB1-215ENST00000488494 ACIN1Q9UKV3 1341 aaKnown RBP26.39■■□□□ 1.81
ITGB1-215ENST00000488494 METP08581 1390 aa26.38■■□□□ 1.81
ITGB1-215ENST00000488494 ROBO1Q9Y6N7 1651 aa26.37■■□□□ 1.81
ITGB1-215ENST00000488494 SETD1AO15047 1707 aaKnown RBP26.36■■□□□ 1.81
ITGB1-215ENST00000488494 NCOA3Q9Y6Q9 1424 aa26.36■■□□□ 1.81
ITGB1-215ENST00000488494 SPATA31E1Q6ZUB1 1445 aa26.35■■□□□ 1.81
ITGB1-215ENST00000488494 AMOTL2Q9Y2J4 779 aa26.35■■□□□ 1.81
ITGB1-215ENST00000488494 RPGRIP1LQ68CZ1 1315 aa26.34■■□□□ 1.81
ITGB1-215ENST00000488494 FAM135BQ49AJ0 1406 aa26.33■■□□□ 1.81
ITGB1-215ENST00000488494 VGFO15240 615 aaPredicted RBP26.33■■□□□ 1.81
ITGB1-215ENST00000488494 C14orf37Q86TY3 774 aa26.33■■□□□ 1.81
ITGB1-215ENST00000488494 IFT172Q9UG01 1749 aa26.33■■□□□ 1.81
ITGB1-215ENST00000488494 MED1Q15648 1581 aaPredicted RBP26.32■■□□□ 1.8
ITGB1-215ENST00000488494 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.31■■□□□ 1.8
ITGB1-215ENST00000488494 RGL3Q3MIN7 710 aa26.26■■□□□ 1.79
ITGB1-215ENST00000488494 SLAIN2Q9P270 581 aa26.24■■□□□ 1.79
ITGB1-215ENST00000488494 NALCNQ8IZF0 1738 aa26.24■■□□□ 1.79
ITGB1-215ENST00000488494 DCCP43146 1447 aa26.23■■□□□ 1.79
ITGB1-215ENST00000488494 PTCH1Q13635 1447 aa26.23■■□□□ 1.79
ITGB1-215ENST00000488494 ANKRD30BQ9BXX2 1392 aa26.23■■□□□ 1.79
ITGB1-215ENST00000488494 C19orf44Q9H6X5 657 aa26.23■■□□□ 1.79
ITGB1-215ENST00000488494 ADGRF5Q8IZF2 1346 aa26.22■■□□□ 1.79
ITGB1-215ENST00000488494 ATF3P18847 181 aa26.21■■□□□ 1.79
ITGB1-215ENST00000488494 CADPS2Q86UW7 1296 aa26.21■■□□□ 1.79
ITGB1-215ENST00000488494 PRAG1Q86YV5 1406 aa26.21■■□□□ 1.79
ITGB1-215ENST00000488494 ADGRL3Q9HAR2 1447 aa26.21■■□□□ 1.79
ITGB1-215ENST00000488494 PHLPP1O60346 1717 aa26.2■■□□□ 1.79
ITGB1-215ENST00000488494 PIK3C2GO75747 1445 aa26.19■■□□□ 1.78
ITGB1-215ENST00000488494 ROBO2Q9HCK4 1378 aa26.18■■□□□ 1.78
ITGB1-215ENST00000488494 ASXL1Q8IXJ9 1541 aa26.17■■□□□ 1.78
ITGB1-215ENST00000488494 HRCP23327 699 aa26.16■■□□□ 1.78
ITGB1-215ENST00000488494 MYOM2P54296 1465 aa26.16■■□□□ 1.78
ITGB1-215ENST00000488494 COL16A1Q07092 1604 aaPredicted RBP26.14■■□□□ 1.78
ITGB1-215ENST00000488494 MST1RQ04912 1400 aa26.14■■□□□ 1.77
ITGB1-215ENST00000488494 ILDR2Q71H61 639 aa26.13■■□□□ 1.77
ITGB1-215ENST00000488494 AHDC1Q5TGY3 1603 aaPredicted RBP26.13■■□□□ 1.77
ITGB1-215ENST00000488494 NRXN1Q9ULB1 1477 aa26.12■■□□□ 1.77
ITGB1-215ENST00000488494 LAMC1P11047 1609 aa26.11■■□□□ 1.77
ITGB1-215ENST00000488494 KNDC1Q76NI1 1749 aa26.1■■□□□ 1.77
ITGB1-215ENST00000488494 TECPR2O15040 1411 aa26.07■■□□□ 1.76
ITGB1-215ENST00000488494 BRINP3Q76B58 766 aa26.07■■□□□ 1.76
ITGB1-215ENST00000488494 LRPPRCP42704 1394 aaKnown RBP26.07■■□□□ 1.76
ITGB1-215ENST00000488494 PHF23Q9BUL5 403 aaPredicted RBP26.06■■□□□ 1.76
ITGB1-215ENST00000488494 CDC42BPGQ6DT37 1551 aa26.04■■□□□ 1.76
ITGB1-215ENST00000488494 NHSL1Q5SYE7 1610 aa26.04■■□□□ 1.76
ITGB1-215ENST00000488494 STK26Q9P289 416 aa26.04■■□□□ 1.76
ITGB1-215ENST00000488494 TMEM132EQ6IEE7 984 aa26.03■■□□□ 1.76
ITGB1-215ENST00000488494 JCADQ9P266 1359 aa26.03■■□□□ 1.76
ITGB1-215ENST00000488494 YTHDC2Q9H6S0 1430 aaKnown RBP26.03■■□□□ 1.76
ITGB1-215ENST00000488494 C1orf167Q5SNV9 1468 aa26.01■■□□□ 1.75
ITGB1-215ENST00000488494 ABCC11Q96J66 1382 aa26■■□□□ 1.75
ITGB1-215ENST00000488494 C14orf93Q9H972 538 aaKnown RBP25.99■■□□□ 1.75
ITGB1-215ENST00000488494 SHPRHQ149N8 1683 aa25.99■■□□□ 1.75
ITGB1-215ENST00000488494 CFAP70Q5T0N1 1121 aa25.98■■□□□ 1.75
ITGB1-215ENST00000488494 PLEKHH1Q9ULM0 1364 aa25.97■■□□□ 1.75
ITGB1-215ENST00000488494 ADGRB1O14514 1584 aa25.95■■□□□ 1.75
ITGB1-215ENST00000488494 WAPLQ7Z5K2 1190 aa25.95■■□□□ 1.74
ITGB1-215ENST00000488494 DCAF11Q8TEB1 546 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms