RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 C11orf95C9JLR9 678 aaPredicted RBP13.25□□□□□ -0.29
SF3B1-211ENST00000487698 SLC52A1Q9NWF4 448 aa13.24□□□□□ -0.29
SF3B1-211ENST00000487698 RPGRIP1LQ68CZ1 1315 aa13.23□□□□□ -0.29
SF3B1-211ENST00000487698 PIK3C2GO75747 1445 aa13.23□□□□□ -0.29
SF3B1-211ENST00000487698 KIF7Q2M1P5 1343 aa13.23□□□□□ -0.29
SF3B1-211ENST00000487698 IDI1Q13907 227 aa13.22□□□□□ -0.29
SF3B1-211ENST00000487698 MLECQ14165 292 aa13.22□□□□□ -0.29
SF3B1-211ENST00000487698 FBXO31Q5XUX0 539 aaPredicted RBP13.22□□□□□ -0.29
SF3B1-211ENST00000487698 ADGRF5Q8IZF2 1346 aa13.22□□□□□ -0.29
SF3B1-211ENST00000487698 SETBP1Q9Y6X0 1596 aa13.22□□□□□ -0.29
SF3B1-211ENST00000487698 ARID4BQ4LE39 1312 aaPredicted RBP13.21□□□□□ -0.29
SF3B1-211ENST00000487698 FER1L4A9Z1Z3 1794 aa13.21□□□□□ -0.29
SF3B1-211ENST00000487698 ST20-MTHFSA0A0A6YYL1 179 aa13.21□□□□□ -0.3
SF3B1-211ENST00000487698 ZMYM3Q14202 1370 aa13.2□□□□□ -0.3
SF3B1-211ENST00000487698 ZFYVE9O95405 1425 aa13.2□□□□□ -0.3
SF3B1-211ENST00000487698 CHGAP10645 457 aaKnown RBP13.2□□□□□ -0.3
SF3B1-211ENST00000487698 SCAF11Q99590 1463 aaKnown RBP13.2□□□□□ -0.3
SF3B1-211ENST00000487698 KDM5AP29375 1690 aaKnown RBP13.19□□□□□ -0.3
SF3B1-211ENST00000487698 ADGRB1O14514 1584 aa13.18□□□□□ -0.3
SF3B1-211ENST00000487698 MYO3AQ8NEV4 1616 aa13.18□□□□□ -0.3
SF3B1-211ENST00000487698 C3P01024 1663 aa13.18□□□□□ -0.3
SF3B1-211ENST00000487698 A2ML1A8K2U0 1454 aa13.17□□□□□ -0.3
SF3B1-211ENST00000487698 TESK2Q96S53 571 aa13.16□□□□□ -0.3
SF3B1-211ENST00000487698 ESF1Q9H501 851 aaKnown RBP13.16□□□□□ -0.3
SF3B1-211ENST00000487698 CFAP70Q5T0N1 1121 aa13.16□□□□□ -0.3
SF3B1-211ENST00000487698 UBR1Q8IWV7 1749 aa13.14□□□□□ -0.31
SF3B1-211ENST00000487698 C14orf93Q9H972 538 aaKnown RBP13.14□□□□□ -0.31
SF3B1-211ENST00000487698 EIF3AQ14152 1382 aaKnown RBP13.14□□□□□ -0.31
SF3B1-211ENST00000487698 VGFO15240 615 aaPredicted RBP13.13□□□□□ -0.31
SF3B1-211ENST00000487698 TNRQ92752 1358 aa13.13□□□□□ -0.31
SF3B1-211ENST00000487698 DISP3Q9P2K9 1392 aa13.12□□□□□ -0.31
SF3B1-211ENST00000487698 ASXL1Q8IXJ9 1541 aa13.12□□□□□ -0.31
SF3B1-211ENST00000487698 ARHGEF28Q8N1W1 1705 aaKnown RBP13.12□□□□□ -0.31
SF3B1-211ENST00000487698 SETD1AO15047 1707 aaKnown RBP13.11□□□□□ -0.31
SF3B1-211ENST00000487698 ANP32CO43423 234 aa13.11□□□□□ -0.31
SF3B1-211ENST00000487698 NLRP1Q9C000 1473 aa13.1□□□□□ -0.31
SF3B1-211ENST00000487698 QRICH2Q9H0J4 1663 aa13.1□□□□□ -0.31
SF3B1-211ENST00000487698 ADAMTSL3P82987 1691 aa13.09□□□□□ -0.31
SF3B1-211ENST00000487698 RIMS2Q9UQ26 1411 aa13.09□□□□□ -0.31
SF3B1-211ENST00000487698 SBNO2Q9Y2G9 1366 aa13.09□□□□□ -0.31
SF3B1-211ENST00000487698 ALKQ9UM73 1620 aa13.09□□□□□ -0.31
SF3B1-211ENST00000487698 NRXN3Q9Y4C0 1643 aa13.09□□□□□ -0.31
SF3B1-211ENST00000487698 NUTM2DQ5VT03 806 aaPredicted RBP13.09□□□□□ -0.31
SF3B1-211ENST00000487698 MYOM1P52179 1685 aa13.08□□□□□ -0.31
SF3B1-211ENST00000487698 RIMS1Q86UR5 1692 aaKnown RBP13.08□□□□□ -0.31
SF3B1-211ENST00000487698 CCER2I3L3R5 266 aa13.08□□□□□ -0.32
SF3B1-211ENST00000487698 TMF1P82094 1093 aa13.07□□□□□ -0.32
SF3B1-211ENST00000487698 STAG3Q9UJ98 1225 aa13.07□□□□□ -0.32
SF3B1-211ENST00000487698 POLR3GLQ9BT43 218 aa13.06□□□□□ -0.32
SF3B1-211ENST00000487698 PTPRMP28827 1452 aa13.05□□□□□ -0.32
SF3B1-211ENST00000487698 CEBPAP49715 358 aaPredicted RBP13.04□□□□□ -0.32
SF3B1-211ENST00000487698 TMEM132EQ6IEE7 984 aa13.04□□□□□ -0.32
SF3B1-211ENST00000487698 PRKRIP1Q9H875 184 aaPredicted RBP13.04□□□□□ -0.32
SF3B1-211ENST00000487698 TMEM2Q9UHN6 1383 aa13.04□□□□□ -0.32
SF3B1-211ENST00000487698 CENPJQ9HC77 1338 aaPredicted RBP13.03□□□□□ -0.32
SF3B1-211ENST00000487698 SLC24A1O60721 1099 aa13.03□□□□□ -0.32
SF3B1-211ENST00000487698 SLIT1O75093 1534 aa13.02□□□□□ -0.32
SF3B1-211ENST00000487698 YTHDC2Q9H6S0 1430 aaKnown RBP13.02□□□□□ -0.33
SF3B1-211ENST00000487698 ARHGAP23Q9P227 1491 aa13.02□□□□□ -0.33
SF3B1-211ENST00000487698 CDCA8Q53HL2 280 aa13.01□□□□□ -0.33
SF3B1-211ENST00000487698 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.01□□□□□ -0.33
SF3B1-211ENST00000487698 TRAK1Q9UPV9 953 aa13.01□□□□□ -0.33
SF3B1-211ENST00000487698 ZNF142P52746 1687 aaPredicted RBP13.01□□□□□ -0.33
SF3B1-211ENST00000487698 DLC1Q96QB1 1528 aa13.01□□□□□ -0.33
SF3B1-211ENST00000487698 KNDC1Q76NI1 1749 aa13.01□□□□□ -0.33
SF3B1-211ENST00000487698 YTHDC1Q96MU7 727 aaKnown RBP13□□□□□ -0.33
SF3B1-211ENST00000487698 CEP170BQ9Y4F5 1589 aaPredicted RBP13□□□□□ -0.33
SF3B1-211ENST00000487698 TULP4Q9NRJ4 1543 aa13□□□□□ -0.33
SF3B1-211ENST00000487698 PER1O15534 1290 aaPredicted RBP12.98□□□□□ -0.33
SF3B1-211ENST00000487698 KTN1Q86UP2 1357 aaKnown RBP12.97□□□□□ -0.33
SF3B1-211ENST00000487698 SETD1BQ9UPS6 1966 aaKnown RBP12.97□□□□□ -0.33
SF3B1-211ENST00000487698 HDGFP51858 240 aaKnown RBP12.97□□□□□ -0.33
SF3B1-211ENST00000487698 LRPPRCP42704 1394 aaKnown RBP12.97□□□□□ -0.33
SF3B1-211ENST00000487698 PLEKHG1Q9ULL1 1385 aa12.97□□□□□ -0.33
SF3B1-211ENST00000487698 CENPBP07199 599 aaPredicted RBP12.96□□□□□ -0.33
SF3B1-211ENST00000487698 ADAMTS13Q76LX8 1427 aa12.96□□□□□ -0.33
SF3B1-211ENST00000487698 MED14O60244 1454 aa12.96□□□□□ -0.34
SF3B1-211ENST00000487698 CPS1P31327 1500 aa12.95□□□□□ -0.34
SF3B1-211ENST00000487698 TECPR2O15040 1411 aa12.95□□□□□ -0.34
SF3B1-211ENST00000487698 SENP3Q9H4L4 574 aaPredicted RBP12.95□□□□□ -0.34
SF3B1-211ENST00000487698 PANK3Q9H999 370 aa12.95□□□□□ -0.34
SF3B1-211ENST00000487698 METP08581 1390 aa12.95□□□□□ -0.34
SF3B1-211ENST00000487698 ABCC11Q96J66 1382 aa12.95□□□□□ -0.34
SF3B1-211ENST00000487698 PARD3Q8TEW0 1356 aa12.94□□□□□ -0.34
SF3B1-211ENST00000487698 LTKP29376 864 aa12.94□□□□□ -0.34
SF3B1-211ENST00000487698 PUS7Q96PZ0 661 aaKnown RBP12.94□□□□□ -0.34
SF3B1-211ENST00000487698 STK26Q9P289 416 aa12.94□□□□□ -0.34
SF3B1-211ENST00000487698 DIP2AQ14689 1571 aa12.93□□□□□ -0.34
SF3B1-211ENST00000487698 CCDC184Q52MB2 194 aa12.92□□□□□ -0.34
SF3B1-211ENST00000487698 RALBP1Q15311 655 aa12.92□□□□□ -0.34
SF3B1-211ENST00000487698 PLPPR3Q6T4P5 718 aa12.92□□□□□ -0.34
SF3B1-211ENST00000487698 EVC2Q86UK5 1308 aa12.92□□□□□ -0.34
SF3B1-211ENST00000487698 THEMISQ8N1K5 641 aaPredicted RBP12.91□□□□□ -0.34
SF3B1-211ENST00000487698 PRAM1Q96QH2 718 aa12.91□□□□□ -0.34
SF3B1-211ENST00000487698 USP32Q8NFA0 1604 aa12.91□□□□□ -0.34
SF3B1-211ENST00000487698 FAM135BQ49AJ0 1406 aa12.91□□□□□ -0.34
SF3B1-211ENST00000487698 NPC1L1Q9UHC9 1359 aa12.9□□□□□ -0.34
SF3B1-211ENST00000487698 TXNDC2Q86VQ3 553 aa12.9□□□□□ -0.34
SF3B1-211ENST00000487698 EID1Q9Y6B2 187 aa12.89□□□□□ -0.35
SF3B1-211ENST00000487698 MYBBP1AQ9BQG0 1328 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms