RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 FAM98CQ17RN3 349 aaKnown RBP11.71□□□□□ -0.53
TMEM39A-209ENST00000486235 RGS20O76081 388 aa11.7□□□□□ -0.54
TMEM39A-209ENST00000486235 PAXIP1Q6ZW49 1069 aaPredicted RBP11.7□□□□□ -0.54
TMEM39A-209ENST00000486235 TSKSQ9UJT2 592 aa11.7□□□□□ -0.54
TMEM39A-209ENST00000486235 GRXCR2A6NFK2 248 aa11.69□□□□□ -0.54
TMEM39A-209ENST00000486235 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.69□□□□□ -0.54
TMEM39A-209ENST00000486235 HPS5Q9UPZ3 1129 aa11.69□□□□□ -0.54
TMEM39A-209ENST00000486235 ERCC6L2Q5T890 1561 aa11.68□□□□□ -0.54
TMEM39A-209ENST00000486235 ITGBL1O95965 494 aaPredicted RBP11.68□□□□□ -0.54
TMEM39A-209ENST00000486235 E2F4Q16254 413 aa11.68□□□□□ -0.54
TMEM39A-209ENST00000486235 PACS2Q86VP3 889 aa11.68□□□□□ -0.54
TMEM39A-209ENST00000486235 LRCH3Q96II8 777 aa11.68□□□□□ -0.54
TMEM39A-209ENST00000486235 IRX2Q9BZI1 471 aaPredicted RBP11.68□□□□□ -0.54
TMEM39A-209ENST00000486235 ABCA10Q8WWZ4 1543 aa11.68□□□□□ -0.54
TMEM39A-209ENST00000486235 SPDYE16A6NNV3 312 aaPredicted RBP11.67□□□□□ -0.54
TMEM39A-209ENST00000486235 SMAPO00193 183 aa11.67□□□□□ -0.54
TMEM39A-209ENST00000486235 PRIM1P49642 420 aaKnown RBP11.67□□□□□ -0.54
TMEM39A-209ENST00000486235 ABCA5Q8WWZ7 1642 aa11.67□□□□□ -0.54
TMEM39A-209ENST00000486235 WDR70Q9NW82 654 aa11.66□□□□□ -0.54
TMEM39A-209ENST00000486235 GRIN2AQ12879 1464 aa11.65□□□□□ -0.54
TMEM39A-209ENST00000486235 TSR3Q9UJK0 312 aaKnown RBP11.65□□□□□ -0.54
TMEM39A-209ENST00000486235 CDCA7LQ96GN5 454 aa11.64□□□□□ -0.55
TMEM39A-209ENST00000486235 KCNC4Q03721 635 aa11.63□□□□□ -0.55
TMEM39A-209ENST00000486235 NYAP1Q6ZVC0 841 aa11.63□□□□□ -0.55
TMEM39A-209ENST00000486235 RTN4Q9NQC3 1192 aaKnown RBP11.63□□□□□ -0.55
TMEM39A-209ENST00000486235 FAM198AQ9UFP1 575 aa11.63□□□□□ -0.55
TMEM39A-209ENST00000486235 CEP170Q5SW79 1584 aa11.62□□□□□ -0.55
TMEM39A-209ENST00000486235 ADAMTS12P58397 1594 aa11.62□□□□□ -0.55
TMEM39A-209ENST00000486235 NUP160Q12769 1436 aa11.61□□□□□ -0.55
TMEM39A-209ENST00000486235 C3orf80F5H4A9 247 aa11.61□□□□□ -0.55
TMEM39A-209ENST00000486235 PRSS12P56730 875 aa11.61□□□□□ -0.55
TMEM39A-209ENST00000486235 WRNQ14191 1432 aaPredicted RBP eCLIP11.6□□□□□ -0.55
TMEM39A-209ENST00000486235 AMER1Q5JTC6 1135 aaPredicted RBP11.6□□□□□ -0.55
TMEM39A-209ENST00000486235 SAMD7Q7Z3H4 446 aa11.6□□□□□ -0.55
TMEM39A-209ENST00000486235 SUPT5HO00267 1087 aaKnown RBP11.59□□□□□ -0.55
TMEM39A-209ENST00000486235 PPP4CP60510 307 aa11.59□□□□□ -0.55
TMEM39A-209ENST00000486235 CDHR5Q9HBB8 845 aa11.59□□□□□ -0.55
TMEM39A-209ENST00000486235 FHAD1B1AJZ9 1412 aa11.58□□□□□ -0.56
TMEM39A-209ENST00000486235 PNMA3Q9UL41 463 aa11.57□□□□□ -0.56
TMEM39A-209ENST00000486235 OSBPP22059 807 aa11.56□□□□□ -0.56
TMEM39A-209ENST00000486235 TATDN2Q93075 761 aa11.56□□□□□ -0.56
TMEM39A-209ENST00000486235 SHROOM2Q13796 1616 aa11.56□□□□□ -0.56
TMEM39A-209ENST00000486235 SLC24A1O60721 1099 aa11.55□□□□□ -0.56
TMEM39A-209ENST00000486235 PRG4Q92954 1404 aaPredicted RBP11.54□□□□□ -0.56
TMEM39A-209ENST00000486235 CERKQ8TCT0 537 aa11.54□□□□□ -0.56
TMEM39A-209ENST00000486235 ARIH1Q9Y4X5 557 aaPredicted RBP11.54□□□□□ -0.56
TMEM39A-209ENST00000486235 RNF40O75150 1001 aa11.53□□□□□ -0.56
TMEM39A-209ENST00000486235 NUDT18Q6ZVK8 323 aa11.53□□□□□ -0.56
TMEM39A-209ENST00000486235 TOP2BQ02880 1626 aa11.53□□□□□ -0.56
TMEM39A-209ENST00000486235 NBPF26B4DH59 902 aa11.52□□□□□ -0.57
TMEM39A-209ENST00000486235 BIVM-ERCC5R4GMW8 1640 aa11.52□□□□□ -0.57
TMEM39A-209ENST00000486235 ERICH3Q5RHP9 1530 aa11.51□□□□□ -0.57
TMEM39A-209ENST00000486235 KIF13AQ9H1H9 1805 aa11.51□□□□□ -0.57
TMEM39A-209ENST00000486235 FAM69CQ0P6D2 419 aa11.5□□□□□ -0.57
TMEM39A-209ENST00000486235 TJAP1Q5JTD0 557 aa11.49□□□□□ -0.57
TMEM39A-209ENST00000486235 Q6ZNB5 142 aa11.47□□□□□ -0.57
TMEM39A-209ENST00000486235 MTRQ99707 1265 aa11.47□□□□□ -0.57
TMEM39A-209ENST00000486235 ABCC10Q5T3U5 1492 aa11.46□□□□□ -0.57
TMEM39A-209ENST00000486235 HDGFP51858 240 aaKnown RBP11.46□□□□□ -0.57
TMEM39A-209ENST00000486235 PADI6Q6TGC4 694 aa11.46□□□□□ -0.57
TMEM39A-209ENST00000486235 ZNF516Q92618 1163 aa11.45□□□□□ -0.58
TMEM39A-209ENST00000486235 NPDC1Q9NQX5 325 aaPredicted RBP11.45□□□□□ -0.58
TMEM39A-209ENST00000486235 RUSC2Q8N2Y8 1516 aa11.45□□□□□ -0.58
TMEM39A-209ENST00000486235 APLP1P51693 650 aa11.43□□□□□ -0.58
TMEM39A-209ENST00000486235 DIP2BQ9P265 1576 aa11.42□□□□□ -0.58
TMEM39A-209ENST00000486235 MAPKBP1O60336 1514 aa11.42□□□□□ -0.58
TMEM39A-209ENST00000486235 SWT1Q5T5J6 900 aaKnown RBP11.42□□□□□ -0.58
TMEM39A-209ENST00000486235 IL21Q9HBE4 155 aa11.42□□□□□ -0.58
TMEM39A-209ENST00000486235 TSHZ2Q9NRE2 1034 aa11.42□□□□□ -0.58
TMEM39A-209ENST00000486235 RBM27Q9P2N5 1060 aaKnown RBP11.41□□□□□ -0.58
TMEM39A-209ENST00000486235 ADCY10Q96PN6 1610 aa11.41□□□□□ -0.58
TMEM39A-209ENST00000486235 MLLT3P42568 568 aaPredicted RBP11.4□□□□□ -0.58
TMEM39A-209ENST00000486235 PPP1R18Q6NYC8 613 aa11.4□□□□□ -0.58
TMEM39A-209ENST00000486235 TTC13Q8NBP0 860 aa11.4□□□□□ -0.58
TMEM39A-209ENST00000486235 TTBK1Q5TCY1 1321 aaPredicted RBP11.39□□□□□ -0.59
TMEM39A-209ENST00000486235 KDM6BO15054 1643 aa11.39□□□□□ -0.59
TMEM39A-209ENST00000486235 NKX2-3Q8TAU0 364 aa11.39□□□□□ -0.59
TMEM39A-209ENST00000486235 PRKD2Q9BZL6 878 aa11.39□□□□□ -0.59
TMEM39A-209ENST00000486235 COPS2P61201 443 aa11.38□□□□□ -0.59
TMEM39A-209ENST00000486235 KIAA0586Q9BVV6 1533 aa11.37□□□□□ -0.59
TMEM39A-209ENST00000486235 GFRA3O60609 400 aa11.37□□□□□ -0.59
TMEM39A-209ENST00000486235 TSPOAP1O95153 1857 aa11.36□□□□□ -0.59
TMEM39A-209ENST00000486235 IGF1RP08069 1367 aa11.35□□□□□ -0.59
TMEM39A-209ENST00000486235 SLF2Q8IX21 1173 aa11.34□□□□□ -0.59
TMEM39A-209ENST00000486235 KCNV2Q8TDN2 545 aa11.34□□□□□ -0.59
TMEM39A-209ENST00000486235 EYA1Q99502 592 aa11.34□□□□□ -0.59
TMEM39A-209ENST00000486235 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.34□□□□□ -0.59
TMEM39A-209ENST00000486235 PTPRGP23470 1445 aa11.34□□□□□ -0.59
TMEM39A-209ENST00000486235 ARHGEF1Q92888 912 aaKnown RBP11.33□□□□□ -0.6
TMEM39A-209ENST00000486235 KIF27Q86VH2 1401 aa11.33□□□□□ -0.6
TMEM39A-209ENST00000486235 LAPTM4AQ15012 233 aa11.3□□□□□ -0.6
TMEM39A-209ENST00000486235 CUL7Q14999 1698 aa11.3□□□□□ -0.6
TMEM39A-209ENST00000486235 SLC4A3P48751 1232 aa11.29□□□□□ -0.6
TMEM39A-209ENST00000486235 FAM161AQ3B820 660 aa11.29□□□□□ -0.6
TMEM39A-209ENST00000486235 TNIKQ9UKE5 1360 aa11.28□□□□□ -0.6
TMEM39A-209ENST00000486235 ASXL2Q76L83 1435 aa11.28□□□□□ -0.6
TMEM39A-209ENST00000486235 NUTM2FA1L443 756 aa11.28□□□□□ -0.6
TMEM39A-209ENST00000486235 LCE2BO14633 110 aa11.28□□□□□ -0.6
TMEM39A-209ENST00000486235 NECTIN2Q92692 538 aa11.28□□□□□ -0.6
TMEM39A-209ENST00000486235 ABCC2Q92887 1545 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms