RNA–Protein interactions for RNA: ENST00000470661.1

PTP4A1-202, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

TSL 2

Gene PTP4A1, Length 479 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-202ENST00000470661 BCAMP50895 628 aa12.49□□□□□ -0.41
PTP4A1-202ENST00000470661 SAMD7Q7Z3H4 446 aa12.49□□□□□ -0.41
PTP4A1-202ENST00000470661 KRI1Q8N9T8 703 aaKnown RBP12.49□□□□□ -0.41
PTP4A1-202ENST00000470661 PXYLP1Q8TE99 480 aa12.49□□□□□ -0.41
PTP4A1-202ENST00000470661 NLRP7Q8WX94 980 aa12.49□□□□□ -0.41
PTP4A1-202ENST00000470661 BAZ1AQ9NRL2 1556 aaPredicted RBP12.48□□□□□ -0.41
PTP4A1-202ENST00000470661 IRF6O14896 467 aa12.48□□□□□ -0.41
PTP4A1-202ENST00000470661 CCDC102AQ96A19 550 aa12.48□□□□□ -0.41
PTP4A1-202ENST00000470661 MINK1Q8N4C8 1332 aaPredicted RBP12.47□□□□□ -0.41
PTP4A1-202ENST00000470661 RCCD1A6NED2 376 aa12.47□□□□□ -0.41
PTP4A1-202ENST00000470661 PHOX2BQ99453 314 aa12.47□□□□□ -0.41
PTP4A1-202ENST00000470661 THSD4Q6ZMP0 1018 aa12.46□□□□□ -0.41
PTP4A1-202ENST00000470661 SMARCA2P51531 1590 aa12.45□□□□□ -0.42
PTP4A1-202ENST00000470661 DNAJB2P25686 324 aa12.45□□□□□ -0.42
PTP4A1-202ENST00000470661 SWT1Q5T5J6 900 aaKnown RBP12.45□□□□□ -0.42
PTP4A1-202ENST00000470661 LRCH3Q96II8 777 aa12.45□□□□□ -0.42
PTP4A1-202ENST00000470661 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.45□□□□□ -0.42
PTP4A1-202ENST00000470661 NESP48681 1621 aa12.44□□□□□ -0.42
PTP4A1-202ENST00000470661 SOWAHBA6NEL2 793 aa12.44□□□□□ -0.42
PTP4A1-202ENST00000470661 PTPN5P54829 565 aa12.44□□□□□ -0.42
PTP4A1-202ENST00000470661 BAZ1BQ9UIG0 1483 aaKnown RBP12.44□□□□□ -0.42
PTP4A1-202ENST00000470661 RNF40O75150 1001 aa12.43□□□□□ -0.42
PTP4A1-202ENST00000470661 TMEM134Q9H6X4 195 aa12.43□□□□□ -0.42
PTP4A1-202ENST00000470661 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.42□□□□□ -0.42
PTP4A1-202ENST00000470661 HDGFP51858 240 aaKnown RBP12.41□□□□□ -0.42
PTP4A1-202ENST00000470661 SLC24A3Q9HC58 644 aa12.4□□□□□ -0.42
PTP4A1-202ENST00000470661 HPS5Q9UPZ3 1129 aa12.4□□□□□ -0.42
PTP4A1-202ENST00000470661 WIZO95785 1651 aa12.4□□□□□ -0.42
PTP4A1-202ENST00000470661 HMGXB3Q12766 1538 aa12.38□□□□□ -0.43
PTP4A1-202ENST00000470661 TPRNQ4KMQ1 711 aa12.38□□□□□ -0.43
PTP4A1-202ENST00000470661 WBP1LQ9NX94 342 aa12.38□□□□□ -0.43
PTP4A1-202ENST00000470661 HCSTQ9UBK5 93 aa12.37□□□□□ -0.43
PTP4A1-202ENST00000470661 TSR3Q9UJK0 312 aaKnown RBP12.36□□□□□ -0.43
PTP4A1-202ENST00000470661 MDM2Q00987 491 aaPredicted RBP12.35□□□□□ -0.43
PTP4A1-202ENST00000470661 SLF2Q8IX21 1173 aa12.35□□□□□ -0.43
PTP4A1-202ENST00000470661 RSF1Q96T23 1441 aaPredicted RBP12.35□□□□□ -0.43
PTP4A1-202ENST00000470661 PEG3Q9GZU2 1588 aa12.35□□□□□ -0.43
PTP4A1-202ENST00000470661 ERCC6Q03468 1493 aa12.34□□□□□ -0.43
PTP4A1-202ENST00000470661 PPP4CP60510 307 aa12.34□□□□□ -0.43
PTP4A1-202ENST00000470661 AK7Q96M32 723 aa12.34□□□□□ -0.43
PTP4A1-202ENST00000470661 TRIM66O15016 1216 aa12.32□□□□□ -0.44
PTP4A1-202ENST00000470661 DAXXQ9UER7 740 aaPredicted RBP12.32□□□□□ -0.44
PTP4A1-202ENST00000470661 SLC4A3P48751 1232 aa12.31□□□□□ -0.44
PTP4A1-202ENST00000470661 DDX11L8A8MPP1 907 aa12.3□□□□□ -0.44
PTP4A1-202ENST00000470661 SLC10A3P09131 477 aa12.29□□□□□ -0.44
PTP4A1-202ENST00000470661 PRKCSHP14314 528 aaPredicted RBP12.28□□□□□ -0.44
PTP4A1-202ENST00000470661 TTLL12Q14166 644 aaPredicted RBP12.28□□□□□ -0.44
PTP4A1-202ENST00000470661 REPIN1Q9BWE0 567 aaKnown RBP12.28□□□□□ -0.44
PTP4A1-202ENST00000470661 CLCN1P35523 988 aa12.27□□□□□ -0.45
PTP4A1-202ENST00000470661 AMHR2Q16671 573 aa12.27□□□□□ -0.45
PTP4A1-202ENST00000470661 RDH13Q8NBN7 331 aa12.27□□□□□ -0.45
PTP4A1-202ENST00000470661 GPCPD1Q9NPB8 672 aa12.27□□□□□ -0.45
PTP4A1-202ENST00000470661 APLP1P51693 650 aa12.26□□□□□ -0.45
PTP4A1-202ENST00000470661 CFHP08603 1231 aa12.25□□□□□ -0.45
PTP4A1-202ENST00000470661 TMUB1Q9BVT8 246 aa12.25□□□□□ -0.45
PTP4A1-202ENST00000470661 PDE4DQ08499 809 aa12.23□□□□□ -0.45
PTP4A1-202ENST00000470661 NYAP1Q6ZVC0 841 aa12.23□□□□□ -0.45
PTP4A1-202ENST00000470661 SULF1Q8IWU6 871 aa12.23□□□□□ -0.45
PTP4A1-202ENST00000470661 PARP9Q8IXQ6 854 aa12.23□□□□□ -0.45
PTP4A1-202ENST00000470661 NECTIN2Q92692 538 aa12.23□□□□□ -0.45
PTP4A1-202ENST00000470661 CADPSQ9ULU8 1353 aa12.21□□□□□ -0.45
PTP4A1-202ENST00000470661 RSPH4AQ5TD94 716 aa12.21□□□□□ -0.45
PTP4A1-202ENST00000470661 GIGYF2Q6Y7W6 1299 aaKnown RBP12.21□□□□□ -0.45
PTP4A1-202ENST00000470661 FAM217BQ9NTX9 383 aaPredicted RBP12.21□□□□□ -0.45
PTP4A1-202ENST00000470661 CD46P15529 392 aa12.18□□□□□ -0.46
PTP4A1-202ENST00000470661 KMT5BQ4FZB7 885 aa12.18□□□□□ -0.46
PTP4A1-202ENST00000470661 KIF21AQ7Z4S6 1674 aa12.17□□□□□ -0.46
PTP4A1-202ENST00000470661 SSTR3P32745 418 aaPredicted RBP12.17□□□□□ -0.46
PTP4A1-202ENST00000470661 LAMC3Q9Y6N6 1575 aa12.17□□□□□ -0.46
PTP4A1-202ENST00000470661 ACTN4O43707 911 aaKnown RBP12.16□□□□□ -0.46
PTP4A1-202ENST00000470661 GCGRP47871 477 aa12.16□□□□□ -0.46
PTP4A1-202ENST00000470661 PRR14Q9BWN1 585 aa12.16□□□□□ -0.46
PTP4A1-202ENST00000470661 TOP2AP11388 1531 aaKnown RBP12.16□□□□□ -0.46
PTP4A1-202ENST00000470661 PDS5BQ9NTI5 1447 aa12.15□□□□□ -0.46
PTP4A1-202ENST00000470661 CUX2O14529 1486 aa12.14□□□□□ -0.47
PTP4A1-202ENST00000470661 MS4A1P11836 297 aa12.14□□□□□ -0.47
PTP4A1-202ENST00000470661 COPS2P61201 443 aa12.14□□□□□ -0.47
PTP4A1-202ENST00000470661 MTRQ99707 1265 aa12.14□□□□□ -0.47
PTP4A1-202ENST00000470661 GPBP1L1Q9HC44 474 aaPredicted RBP12.14□□□□□ -0.47
PTP4A1-202ENST00000470661 PCDHB3Q9Y5E6 796 aa12.14□□□□□ -0.47
PTP4A1-202ENST00000470661 SUPT5HO00267 1087 aaKnown RBP12.13□□□□□ -0.47
PTP4A1-202ENST00000470661 PLA2G2EQ9NZK7 142 aa12.13□□□□□ -0.47
PTP4A1-202ENST00000470661 CCDC88BA6NC98 1476 aa12.13□□□□□ -0.47
PTP4A1-202ENST00000470661 FUT2Q10981 343 aa12.12□□□□□ -0.47
PTP4A1-202ENST00000470661 PUS10Q3MIT2 529 aaKnown RBP12.12□□□□□ -0.47
PTP4A1-202ENST00000470661 TJAP1Q5JTD0 557 aa12.12□□□□□ -0.47
PTP4A1-202ENST00000470661 BLOC1S3Q6QNY0 202 aa12.12□□□□□ -0.47
PTP4A1-202ENST00000470661 THOC2Q8NI27 1593 aaKnown RBP12.11□□□□□ -0.47
PTP4A1-202ENST00000470661 ITGBL1O95965 494 aaPredicted RBP12.09□□□□□ -0.47
PTP4A1-202ENST00000470661 ZNF516Q92618 1163 aa12.09□□□□□ -0.47
PTP4A1-202ENST00000470661 BEGAINQ9BUH8 593 aa12.09□□□□□ -0.47
PTP4A1-202ENST00000470661 FANCD2Q9BXW9 1451 aa12.08□□□□□ -0.47
PTP4A1-202ENST00000470661 KDM4AO75164 1064 aa12.08□□□□□ -0.48
PTP4A1-202ENST00000470661 KDM4CQ9H3R0 1056 aa12.08□□□□□ -0.48
PTP4A1-202ENST00000470661 IL21Q9HBE4 155 aa12.08□□□□□ -0.48
PTP4A1-202ENST00000470661 CFTRP13569 1480 aa12.08□□□□□ -0.48
PTP4A1-202ENST00000470661 KCNC4Q03721 635 aa12.06□□□□□ -0.48
PTP4A1-202ENST00000470661 NEUROD2Q15784 382 aa12.06□□□□□ -0.48
PTP4A1-202ENST00000470661 ATP6V1AP38606 617 aa12.05□□□□□ -0.48
PTP4A1-202ENST00000470661 NUTM1Q86Y26 1132 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms