RNA–Protein interactions for RNA: ENST00000470006.1

NCKIPSD-209, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 2

Gene NCKIPSD, Length 814 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-209ENST00000470006 APLP2Q06481 763 aa29.74■■■□□ 2.35
NCKIPSD-209ENST00000470006 MEX3CQ5U5Q3 659 aaKnown RBP29.74■■■□□ 2.35
NCKIPSD-209ENST00000470006 SLC52A1Q9NWF4 448 aa29.74■■■□□ 2.35
NCKIPSD-209ENST00000470006 ANKRD30AQ9BXX3 1397 aa29.74■■■□□ 2.35
NCKIPSD-209ENST00000470006 NWD1Q149M9 1564 aa29.73■■■□□ 2.35
NCKIPSD-209ENST00000470006 LMTK2Q8IWU2 1503 aa29.73■■■□□ 2.35
NCKIPSD-209ENST00000470006 C14orf37Q86TY3 774 aa29.73■■■□□ 2.35
NCKIPSD-209ENST00000470006 NOS1P29475 1434 aa29.7■■■□□ 2.34
NCKIPSD-209ENST00000470006 HDGFP51858 240 aaKnown RBP29.68■■■□□ 2.34
NCKIPSD-209ENST00000470006 TRIM52Q96A61 297 aa29.67■■■□□ 2.34
NCKIPSD-209ENST00000470006 CHD2O14647 1828 aaKnown RBP29.66■■■□□ 2.34
NCKIPSD-209ENST00000470006 ZNF772Q68DY9 489 aaPredicted RBP29.64■■■□□ 2.34
NCKIPSD-209ENST00000470006 SPATA31A6Q5VVP1 1343 aa29.63■■■□□ 2.33
NCKIPSD-209ENST00000470006 PLEKHG1Q9ULL1 1385 aa29.63■■■□□ 2.33
NCKIPSD-209ENST00000470006 MYO5BQ9ULV0 1848 aa29.62■■■□□ 2.33
NCKIPSD-209ENST00000470006 CHGAP10645 457 aaKnown RBP29.62■■■□□ 2.33
NCKIPSD-209ENST00000470006 COL16A1Q07092 1604 aaPredicted RBP29.62■■■□□ 2.33
NCKIPSD-209ENST00000470006 FGD6Q6ZV73 1430 aa29.62■■■□□ 2.33
NCKIPSD-209ENST00000470006 RIMS2Q9UQ26 1411 aa29.62■■■□□ 2.33
NCKIPSD-209ENST00000470006 UPF1Q92900 1129 aaKnown RBP eCLIP29.6■■■□□ 2.33
NCKIPSD-209ENST00000470006 ATF3P18847 181 aa29.59■■■□□ 2.33
NCKIPSD-209ENST00000470006 LRP6O75581 1613 aa29.58■■■□□ 2.33
NCKIPSD-209ENST00000470006 ZFYVE9O95405 1425 aa29.58■■■□□ 2.33
NCKIPSD-209ENST00000470006 GCC2Q8IWJ2 1684 aa29.57■■■□□ 2.32
NCKIPSD-209ENST00000470006 CADPS2Q86UW7 1296 aa29.57■■■□□ 2.32
NCKIPSD-209ENST00000470006 TBX22Q9Y458 520 aa29.57■■■□□ 2.32
NCKIPSD-209ENST00000470006 NUTM2DQ5VT03 806 aaPredicted RBP29.56■■■□□ 2.32
NCKIPSD-209ENST00000470006 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.55■■■□□ 2.32
NCKIPSD-209ENST00000470006 RPRD2Q5VT52 1461 aaKnown RBP29.55■■■□□ 2.32
NCKIPSD-209ENST00000470006 NUTM2BA6NNL0 878 aaPredicted RBP29.54■■■□□ 2.32
NCKIPSD-209ENST00000470006 NUTM2EB1AL46 878 aaPredicted RBP29.54■■■□□ 2.32
NCKIPSD-209ENST00000470006 NUTM2AQ8IVF1 878 aaPredicted RBP29.54■■■□□ 2.32
NCKIPSD-209ENST00000470006 NCOA3Q9Y6Q9 1424 aa29.54■■■□□ 2.32
NCKIPSD-209ENST00000470006 RXRBP28702 533 aa29.53■■■□□ 2.32
NCKIPSD-209ENST00000470006 C19orf44Q9H6X5 657 aa29.53■■■□□ 2.32
NCKIPSD-209ENST00000470006 FAM50AQ14320 339 aaKnown RBP29.51■■■□□ 2.31
NCKIPSD-209ENST00000470006 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.51■■■□□ 2.31
NCKIPSD-209ENST00000470006 TMEM131LA2VDJ0 1609 aa29.5■■■□□ 2.31
NCKIPSD-209ENST00000470006 ANKRD50Q9ULJ7 1429 aa29.48■■■□□ 2.31
NCKIPSD-209ENST00000470006 SHPRHQ149N8 1683 aa29.48■■■□□ 2.31
NCKIPSD-209ENST00000470006 AHDC1Q5TGY3 1603 aaPredicted RBP29.48■■■□□ 2.31
NCKIPSD-209ENST00000470006 ADGRL2O95490 1459 aa29.46■■■□□ 2.31
NCKIPSD-209ENST00000470006 ADAMTS13Q76LX8 1427 aa29.43■■■□□ 2.3
NCKIPSD-209ENST00000470006 BRINP3Q76B58 766 aa29.42■■■□□ 2.3
NCKIPSD-209ENST00000470006 AMOTL2Q9Y2J4 779 aa29.42■■■□□ 2.3
NCKIPSD-209ENST00000470006 DIP2AQ14689 1571 aa29.41■■■□□ 2.3
NCKIPSD-209ENST00000470006 PIK3R4Q99570 1358 aa29.4■■■□□ 2.3
NCKIPSD-209ENST00000470006 AFF2P51816 1311 aa29.4■■■□□ 2.3
NCKIPSD-209ENST00000470006 TRPM2O94759 1503 aa29.36■■■□□ 2.29
NCKIPSD-209ENST00000470006 C8orf37Q96NL8 207 aa29.33■■■□□ 2.29
NCKIPSD-209ENST00000470006 CDK12Q9NYV4 1490 aaPredicted RBP29.33■■■□□ 2.29
NCKIPSD-209ENST00000470006 E9PCH4 1651 aa29.32■■■□□ 2.28
NCKIPSD-209ENST00000470006 PTPRUQ92729 1446 aa29.3■■■□□ 2.28
NCKIPSD-209ENST00000470006 LRRC59Q96AG4 307 aaKnown RBP29.3■■■□□ 2.28
NCKIPSD-209ENST00000470006 QTRT2Q9H974 415 aaKnown RBP29.3■■■□□ 2.28
NCKIPSD-209ENST00000470006 ASXL1Q8IXJ9 1541 aa29.3■■■□□ 2.28
NCKIPSD-209ENST00000470006 UNC13BO14795 1591 aa29.29■■■□□ 2.28
NCKIPSD-209ENST00000470006 DCCP43146 1447 aa29.28■■■□□ 2.28
NCKIPSD-209ENST00000470006 SETD5Q9C0A6 1442 aa29.27■■■□□ 2.28
NCKIPSD-209ENST00000470006 RBM6P78332 1123 aaKnown RBP29.26■■■□□ 2.27
NCKIPSD-209ENST00000470006 ZNF326Q5BKZ1 582 aaKnown RBP29.24■■■□□ 2.27
NCKIPSD-209ENST00000470006 DDX17Q92841 729 aaKnown RBP29.24■■■□□ 2.27
NCKIPSD-209ENST00000470006 MST1RQ04912 1400 aa29.23■■■□□ 2.27
NCKIPSD-209ENST00000470006 NHSL1Q5SYE7 1610 aa29.22■■■□□ 2.27
NCKIPSD-209ENST00000470006 RGS12O14924 1447 aa29.21■■■□□ 2.27
NCKIPSD-209ENST00000470006 NGLY1Q96IV0 654 aa29.21■■■□□ 2.27
NCKIPSD-209ENST00000470006 NUP155O75694 1391 aa29.21■■■□□ 2.27
NCKIPSD-209ENST00000470006 ADAMTS2O95450 1211 aa29.2■■■□□ 2.26
NCKIPSD-209ENST00000470006 IQGAP3Q86VI3 1631 aa29.2■■■□□ 2.26
NCKIPSD-209ENST00000470006 XRN1Q8IZH2 1706 aaKnown RBP29.18■■■□□ 2.26
NCKIPSD-209ENST00000470006 PNPLA6Q8IY17 1366 aa29.17■■■□□ 2.26
NCKIPSD-209ENST00000470006 NRXN3Q9Y4C0 1643 aa29.14■■■□□ 2.26
NCKIPSD-209ENST00000470006 METP08581 1390 aa29.13■■■□□ 2.25
NCKIPSD-209ENST00000470006 SETBP1Q9Y6X0 1596 aa29.13■■■□□ 2.25
NCKIPSD-209ENST00000470006 ITGAEP38570 1179 aa29.12■■■□□ 2.25
NCKIPSD-209ENST00000470006 ADGRL3Q9HAR2 1447 aa29.11■■■□□ 2.25
NCKIPSD-209ENST00000470006 ROCK1Q13464 1354 aa29.1■■■□□ 2.25
NCKIPSD-209ENST00000470006 ATAD2Q6PL18 1390 aa29.1■■■□□ 2.25
NCKIPSD-209ENST00000470006 SRCAPQ6ZRS2 3230 aa29.1■■■□□ 2.25
NCKIPSD-209ENST00000470006 USP21Q9UK80 565 aa29.08■■■□□ 2.25
NCKIPSD-209ENST00000470006 FOXD1Q16676 465 aa29.07■■■□□ 2.24
NCKIPSD-209ENST00000470006 NALCNQ8IZF0 1738 aa29.06■■■□□ 2.24
NCKIPSD-209ENST00000470006 SPHKAPQ2M3C7 1700 aa29.06■■■□□ 2.24
NCKIPSD-209ENST00000470006 TRPC5Q9UL62 973 aaPredicted RBP29.04■■■□□ 2.24
NCKIPSD-209ENST00000470006 ZRANB1Q9UGI0 708 aa29.03■■■□□ 2.24
NCKIPSD-209ENST00000470006 C1orf167Q5SNV9 1468 aa29.03■■■□□ 2.24
NCKIPSD-209ENST00000470006 ORAI2Q96SN7 254 aa29.01■■■□□ 2.23
NCKIPSD-209ENST00000470006 SOS2Q07890 1332 aaPredicted RBP28.96■■■□□ 2.23
NCKIPSD-209ENST00000470006 FNBP4Q8N3X1 1017 aaPredicted RBP28.94■■■□□ 2.22
NCKIPSD-209ENST00000470006 NEXMIFQ5QGS0 1516 aa28.94■■■□□ 2.22
NCKIPSD-209ENST00000470006 PTCH1Q13635 1447 aa28.94■■■□□ 2.22
NCKIPSD-209ENST00000470006 KIF1BO60333 1816 aa28.91■■■□□ 2.22
NCKIPSD-209ENST00000470006 CLTCL1P53675 1640 aa28.91■■■□□ 2.22
NCKIPSD-209ENST00000470006 ATRNO75882 1429 aa28.9■■■□□ 2.22
NCKIPSD-209ENST00000470006 LAMC1P11047 1609 aa28.9■■■□□ 2.22
NCKIPSD-209ENST00000470006 ROBO2Q9HCK4 1378 aa28.89■■■□□ 2.22
NCKIPSD-209ENST00000470006 VGFO15240 615 aaPredicted RBP28.88■■■□□ 2.21
NCKIPSD-209ENST00000470006 ESCO1Q5FWF5 840 aa28.87■■■□□ 2.21
NCKIPSD-209ENST00000470006 CCDC125Q86Z20 511 aa28.87■■■□□ 2.21
NCKIPSD-209ENST00000470006 EP400Q96L91 3159 aa28.85■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms