RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 DUOX2Q9NRD8 1548 aa18.52■□□□□ 0.56
SQSTM1-206ENST00000466342 BCANQ96GW7 911 aa18.5■□□□□ 0.55
SQSTM1-206ENST00000466342 AHDC1Q5TGY3 1603 aaPredicted RBP18.49■□□□□ 0.55
SQSTM1-206ENST00000466342 NCOA3Q9Y6Q9 1424 aa18.48■□□□□ 0.55
SQSTM1-206ENST00000466342 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.46■□□□□ 0.55
SQSTM1-206ENST00000466342 MYOM3Q5VTT5 1437 aa18.46■□□□□ 0.55
SQSTM1-206ENST00000466342 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.46■□□□□ 0.55
SQSTM1-206ENST00000466342 NUTM2BA6NNL0 878 aaPredicted RBP18.45■□□□□ 0.54
SQSTM1-206ENST00000466342 NUTM2EB1AL46 878 aaPredicted RBP18.45■□□□□ 0.54
SQSTM1-206ENST00000466342 NUTM2AQ8IVF1 878 aaPredicted RBP18.45■□□□□ 0.54
SQSTM1-206ENST00000466342 AFF2P51816 1311 aa18.45■□□□□ 0.54
SQSTM1-206ENST00000466342 CADPS2Q86UW7 1296 aa18.44■□□□□ 0.54
SQSTM1-206ENST00000466342 KANK1Q14678 1352 aa18.42■□□□□ 0.54
SQSTM1-206ENST00000466342 DIP2AQ14689 1571 aa18.42■□□□□ 0.54
SQSTM1-206ENST00000466342 RBM6P78332 1123 aaKnown RBP18.42■□□□□ 0.54
SQSTM1-206ENST00000466342 C14orf37Q86TY3 774 aa18.42■□□□□ 0.54
SQSTM1-206ENST00000466342 C19orf44Q9H6X5 657 aa18.42■□□□□ 0.54
SQSTM1-206ENST00000466342 ADGRB3O60242 1522 aa18.42■□□□□ 0.54
SQSTM1-206ENST00000466342 MYO5BQ9ULV0 1848 aa18.42■□□□□ 0.54
SQSTM1-206ENST00000466342 RGS12O14924 1447 aa18.41■□□□□ 0.54
SQSTM1-206ENST00000466342 ERBINQ96RT1 1412 aa18.41■□□□□ 0.54
SQSTM1-206ENST00000466342 ATF3P18847 181 aa18.41■□□□□ 0.54
SQSTM1-206ENST00000466342 FOXD1Q16676 465 aa18.41■□□□□ 0.54
SQSTM1-206ENST00000466342 NUTM2DQ5VT03 806 aaPredicted RBP18.41■□□□□ 0.54
SQSTM1-206ENST00000466342 QTRT2Q9H974 415 aaKnown RBP18.41■□□□□ 0.54
SQSTM1-206ENST00000466342 SLC52A1Q9NWF4 448 aa18.4■□□□□ 0.54
SQSTM1-206ENST00000466342 KIF15Q9NS87 1388 aa18.4■□□□□ 0.54
SQSTM1-206ENST00000466342 PLEKHG1Q9ULL1 1385 aa18.4■□□□□ 0.54
SQSTM1-206ENST00000466342 ZRANB1Q9UGI0 708 aa18.39■□□□□ 0.53
SQSTM1-206ENST00000466342 TBX22Q9Y458 520 aa18.39■□□□□ 0.53
SQSTM1-206ENST00000466342 NOS1P29475 1434 aa18.39■□□□□ 0.53
SQSTM1-206ENST00000466342 LMTK2Q8IWU2 1503 aa18.39■□□□□ 0.53
SQSTM1-206ENST00000466342 HDGFP51858 240 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-206ENST00000466342 RRP7BPQ9NSQ0 103 aa18.38■□□□□ 0.53
SQSTM1-206ENST00000466342 BRINP3Q76B58 766 aa18.37■□□□□ 0.53
SQSTM1-206ENST00000466342 ZFYVE9O95405 1425 aa18.36■□□□□ 0.53
SQSTM1-206ENST00000466342 SETD5Q9C0A6 1442 aa18.34■□□□□ 0.53
SQSTM1-206ENST00000466342 C8orf37Q96NL8 207 aa18.34■□□□□ 0.53
SQSTM1-206ENST00000466342 CROCC2H7BZ55 1655 aa18.34■□□□□ 0.53
SQSTM1-206ENST00000466342 ATAD2Q6PL18 1390 aa18.33■□□□□ 0.53
SQSTM1-206ENST00000466342 PPP1R15AO75807 674 aaPredicted RBP18.33■□□□□ 0.52
SQSTM1-206ENST00000466342 LRRC59Q96AG4 307 aaKnown RBP18.33■□□□□ 0.52
SQSTM1-206ENST00000466342 NGLY1Q96IV0 654 aa18.33■□□□□ 0.52
SQSTM1-206ENST00000466342 PTPN23Q9H3S7 1636 aa18.33■□□□□ 0.52
SQSTM1-206ENST00000466342 RIMS2Q9UQ26 1411 aa18.32■□□□□ 0.52
SQSTM1-206ENST00000466342 GCC2Q8IWJ2 1684 aa18.31■□□□□ 0.52
SQSTM1-206ENST00000466342 NHSL1Q5SYE7 1610 aa18.31■□□□□ 0.52
SQSTM1-206ENST00000466342 SETBP1Q9Y6X0 1596 aa18.31■□□□□ 0.52
SQSTM1-206ENST00000466342 PIK3R4Q99570 1358 aa18.3■□□□□ 0.52
SQSTM1-206ENST00000466342 TMEM131LA2VDJ0 1609 aa18.29■□□□□ 0.52
SQSTM1-206ENST00000466342 ABCC5O15440 1437 aa18.29■□□□□ 0.52
SQSTM1-206ENST00000466342 ASXL1Q8IXJ9 1541 aa18.28■□□□□ 0.52
SQSTM1-206ENST00000466342 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.28■□□□□ 0.52
SQSTM1-206ENST00000466342 ADAMTS13Q76LX8 1427 aa18.27■□□□□ 0.52
SQSTM1-206ENST00000466342 DCCP43146 1447 aa18.26■□□□□ 0.51
SQSTM1-206ENST00000466342 DAPK1P53355 1430 aa18.26■□□□□ 0.51
SQSTM1-206ENST00000466342 CCDC125Q86Z20 511 aa18.26■□□□□ 0.51
SQSTM1-206ENST00000466342 PPARGC1BQ86YN6 1023 aaKnown RBP18.25■□□□□ 0.51
SQSTM1-206ENST00000466342 AMOTL2Q9Y2J4 779 aa18.25■□□□□ 0.51
SQSTM1-206ENST00000466342 EP400Q96L91 3159 aa18.24■□□□□ 0.51
SQSTM1-206ENST00000466342 PNPLA6Q8IY17 1366 aa18.24■□□□□ 0.51
SQSTM1-206ENST00000466342 RPRD2Q5VT52 1461 aaKnown RBP18.24■□□□□ 0.51
SQSTM1-206ENST00000466342 TRPM2O94759 1503 aa18.22■□□□□ 0.51
SQSTM1-206ENST00000466342 MST1RQ04912 1400 aa18.22■□□□□ 0.51
SQSTM1-206ENST00000466342 ADAMTS2O95450 1211 aa18.21■□□□□ 0.51
SQSTM1-206ENST00000466342 USP21Q9UK80 565 aa18.21■□□□□ 0.51
SQSTM1-206ENST00000466342 TRPC5Q9UL62 973 aaPredicted RBP18.21■□□□□ 0.51
SQSTM1-206ENST00000466342 ANKRD30AQ9BXX3 1397 aa18.2■□□□□ 0.5
SQSTM1-206ENST00000466342 DDX17Q92841 729 aaKnown RBP18.2■□□□□ 0.5
SQSTM1-206ENST00000466342 PTPRUQ92729 1446 aa18.2■□□□□ 0.5
SQSTM1-206ENST00000466342 CHGAP10645 457 aaKnown RBP18.19■□□□□ 0.5
SQSTM1-206ENST00000466342 CHIC2Q9UKJ5 165 aa18.19■□□□□ 0.5
SQSTM1-206ENST00000466342 FAM50AQ14320 339 aaKnown RBP18.17■□□□□ 0.5
SQSTM1-206ENST00000466342 FNBP4Q8N3X1 1017 aaPredicted RBP18.17■□□□□ 0.5
SQSTM1-206ENST00000466342 XRN1Q8IZH2 1706 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-206ENST00000466342 ATRNO75882 1429 aa18.15■□□□□ 0.5
SQSTM1-206ENST00000466342 ADGRL2O95490 1459 aa18.14■□□□□ 0.5
SQSTM1-206ENST00000466342 UNC13BO14795 1591 aa18.14■□□□□ 0.49
SQSTM1-206ENST00000466342 RRBP1Q9P2E9 1410 aaKnown RBP18.13■□□□□ 0.49
SQSTM1-206ENST00000466342 PTCH1Q13635 1447 aa18.12■□□□□ 0.49
SQSTM1-206ENST00000466342 LAMC1P11047 1609 aa18.12■□□□□ 0.49
SQSTM1-206ENST00000466342 LRP5O75197 1615 aa18.11■□□□□ 0.49
SQSTM1-206ENST00000466342 SOS2Q07890 1332 aaPredicted RBP18.09■□□□□ 0.49
SQSTM1-206ENST00000466342 NALCNQ8IZF0 1738 aa18.09■□□□□ 0.49
SQSTM1-206ENST00000466342 ADGRL3Q9HAR2 1447 aa18.08■□□□□ 0.49
SQSTM1-206ENST00000466342 MARF1Q9Y4F3 1742 aaKnown RBP18.08■□□□□ 0.48
SQSTM1-206ENST00000466342 E9PCH4 1651 aa18.08■□□□□ 0.48
SQSTM1-206ENST00000466342 NRXN3Q9Y4C0 1643 aa18.08■□□□□ 0.48
SQSTM1-206ENST00000466342 ANKRD50Q9ULJ7 1429 aa18.06■□□□□ 0.48
SQSTM1-206ENST00000466342 GJD4Q96KN9 370 aaPredicted RBP18.06■□□□□ 0.48
SQSTM1-206ENST00000466342 C1orf167Q5SNV9 1468 aa18.06■□□□□ 0.48
SQSTM1-206ENST00000466342 BLMP54132 1417 aaPredicted RBP18.06■□□□□ 0.48
SQSTM1-206ENST00000466342 COL22A1Q8NFW1 1626 aaPredicted RBP18.05■□□□□ 0.48
SQSTM1-206ENST00000466342 BCL9LQ86UU0 1499 aa18.05■□□□□ 0.48
SQSTM1-206ENST00000466342 BRWD3Q6RI45 1802 aa18.04■□□□□ 0.48
SQSTM1-206ENST00000466342 DEFB132Q7Z7B7 95 aa18.03■□□□□ 0.48
SQSTM1-206ENST00000466342 ORAI2Q96SN7 254 aa18.03■□□□□ 0.48
SQSTM1-206ENST00000466342 METP08581 1390 aa18.03■□□□□ 0.48
SQSTM1-206ENST00000466342 ROCK1Q13464 1354 aa18.03■□□□□ 0.48
SQSTM1-206ENST00000466342 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms