RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.2■■□□□ 1.46
COL7A1-203ENST00000459756 PPP1R15AO75807 674 aaPredicted RBP24.19■■□□□ 1.46
COL7A1-203ENST00000459756 PLEKHG1Q9ULL1 1385 aa24.18■■□□□ 1.46
COL7A1-203ENST00000459756 SLC26A8Q96RN1 970 aa24.18■■□□□ 1.46
COL7A1-203ENST00000459756 BCANQ96GW7 911 aa24.17■■□□□ 1.46
COL7A1-203ENST00000459756 TRPM2O94759 1503 aa24.16■■□□□ 1.46
COL7A1-203ENST00000459756 TOM1O60784 492 aa24.16■■□□□ 1.46
COL7A1-203ENST00000459756 SLC4A1APQ9BWU0 796 aaKnown RBP24.14■■□□□ 1.45
COL7A1-203ENST00000459756 KCNA6P17658 529 aa24.13■■□□□ 1.45
COL7A1-203ENST00000459756 CLTCL1P53675 1640 aa24.12■■□□□ 1.45
COL7A1-203ENST00000459756 ACIN1Q9UKV3 1341 aaKnown RBP24.1■■□□□ 1.45
COL7A1-203ENST00000459756 NWD1Q149M9 1564 aa24.09■■□□□ 1.45
COL7A1-203ENST00000459756 NUTM2DQ5VT03 806 aaPredicted RBP24.09■■□□□ 1.45
COL7A1-203ENST00000459756 TBX22Q9Y458 520 aa24.09■■□□□ 1.45
COL7A1-203ENST00000459756 SENP3Q9H4L4 574 aaPredicted RBP24.08■■□□□ 1.45
COL7A1-203ENST00000459756 NKTRP30414 1462 aaKnown RBP24.07■■□□□ 1.44
COL7A1-203ENST00000459756 PIP4K2BP78356 416 aa24.07■■□□□ 1.44
COL7A1-203ENST00000459756 ZNF326Q5BKZ1 582 aaKnown RBP24.07■■□□□ 1.44
COL7A1-203ENST00000459756 KIF1BO60333 1816 aa24.07■■□□□ 1.44
COL7A1-203ENST00000459756 XIRP1Q702N8 1843 aaKnown RBP24.07■■□□□ 1.44
COL7A1-203ENST00000459756 DIP2AQ14689 1571 aa24.07■■□□□ 1.44
COL7A1-203ENST00000459756 SCAF1Q9H7N4 1312 aaKnown RBP24.07■■□□□ 1.44
COL7A1-203ENST00000459756 ALKQ9UM73 1620 aa24.06■■□□□ 1.44
COL7A1-203ENST00000459756 ADAMTS13Q76LX8 1427 aa24.05■■□□□ 1.44
COL7A1-203ENST00000459756 SETD5Q9C0A6 1442 aa24.05■■□□□ 1.44
COL7A1-203ENST00000459756 CHD2O14647 1828 aaKnown RBP24.05■■□□□ 1.44
COL7A1-203ENST00000459756 TMEM94Q12767 1356 aa24.03■■□□□ 1.44
COL7A1-203ENST00000459756 PROSER2Q86WR7 435 aaPredicted RBP24.03■■□□□ 1.44
COL7A1-203ENST00000459756 PIK3R4Q99570 1358 aa24.02■■□□□ 1.44
COL7A1-203ENST00000459756 MPHOSPH9Q99550 1183 aa24.01■■□□□ 1.43
COL7A1-203ENST00000459756 NEXMIFQ5QGS0 1516 aa24■■□□□ 1.43
COL7A1-203ENST00000459756 SETBP1Q9Y6X0 1596 aa23.99■■□□□ 1.43
COL7A1-203ENST00000459756 FOXD1Q16676 465 aa23.98■■□□□ 1.43
COL7A1-203ENST00000459756 NRXN3Q9Y4C0 1643 aa23.97■■□□□ 1.43
COL7A1-203ENST00000459756 HSPA1LP34931 641 aa23.96■■□□□ 1.43
COL7A1-203ENST00000459756 RAB3GAP2Q9H2M9 1393 aa23.95■■□□□ 1.42
COL7A1-203ENST00000459756 CCDC144AA2RUR9 1427 aa23.94■■□□□ 1.42
COL7A1-203ENST00000459756 RPGRIP1LQ68CZ1 1315 aa23.94■■□□□ 1.42
COL7A1-203ENST00000459756 RBM33Q96EV2 1170 aaKnown RBP23.94■■□□□ 1.42
COL7A1-203ENST00000459756 MSH6P52701 1360 aa23.92■■□□□ 1.42
COL7A1-203ENST00000459756 VGFO15240 615 aaPredicted RBP23.92■■□□□ 1.42
COL7A1-203ENST00000459756 NCOA3Q9Y6Q9 1424 aa23.92■■□□□ 1.42
COL7A1-203ENST00000459756 AMOTL2Q9Y2J4 779 aa23.9■■□□□ 1.42
COL7A1-203ENST00000459756 PTPRUQ92729 1446 aa23.89■■□□□ 1.41
COL7A1-203ENST00000459756 PPLO60437 1756 aa23.88■■□□□ 1.41
COL7A1-203ENST00000459756 METP08581 1390 aa23.87■■□□□ 1.41
COL7A1-203ENST00000459756 XRN1Q8IZH2 1706 aaKnown RBP23.87■■□□□ 1.41
COL7A1-203ENST00000459756 FAM135BQ49AJ0 1406 aa23.86■■□□□ 1.41
COL7A1-203ENST00000459756 SPATA31E1Q6ZUB1 1445 aa23.85■■□□□ 1.41
COL7A1-203ENST00000459756 HRCP23327 699 aa23.85■■□□□ 1.41
COL7A1-203ENST00000459756 C14orf37Q86TY3 774 aa23.85■■□□□ 1.41
COL7A1-203ENST00000459756 DISP3Q9P2K9 1392 aa23.85■■□□□ 1.41
COL7A1-203ENST00000459756 C19orf44Q9H6X5 657 aa23.82■■□□□ 1.4
COL7A1-203ENST00000459756 RGL3Q3MIN7 710 aa23.81■■□□□ 1.4
COL7A1-203ENST00000459756 SLAIN2Q9P270 581 aa23.81■■□□□ 1.4
COL7A1-203ENST00000459756 ANKRD30BQ9BXX2 1392 aa23.8■■□□□ 1.4
COL7A1-203ENST00000459756 ROBO1Q9Y6N7 1651 aa23.8■■□□□ 1.4
COL7A1-203ENST00000459756 SETD1AO15047 1707 aaKnown RBP23.8■■□□□ 1.4
COL7A1-203ENST00000459756 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.79■■□□□ 1.4
COL7A1-203ENST00000459756 CADPS2Q86UW7 1296 aa23.78■■□□□ 1.4
COL7A1-203ENST00000459756 IFT172Q9UG01 1749 aa23.78■■□□□ 1.4
COL7A1-203ENST00000459756 ATF3P18847 181 aa23.77■■□□□ 1.4
COL7A1-203ENST00000459756 ADGRF5Q8IZF2 1346 aa23.75■■□□□ 1.39
COL7A1-203ENST00000459756 DCCP43146 1447 aa23.75■■□□□ 1.39
COL7A1-203ENST00000459756 PTCH1Q13635 1447 aa23.73■■□□□ 1.39
COL7A1-203ENST00000459756 PRAG1Q86YV5 1406 aa23.73■■□□□ 1.39
COL7A1-203ENST00000459756 MED1Q15648 1581 aaPredicted RBP23.72■■□□□ 1.39
COL7A1-203ENST00000459756 ADGRL3Q9HAR2 1447 aa23.7■■□□□ 1.38
COL7A1-203ENST00000459756 PIK3C2GO75747 1445 aa23.69■■□□□ 1.38
COL7A1-203ENST00000459756 ROBO2Q9HCK4 1378 aa23.68■■□□□ 1.38
COL7A1-203ENST00000459756 NALCNQ8IZF0 1738 aa23.67■■□□□ 1.38
COL7A1-203ENST00000459756 PHLPP1O60346 1717 aa23.66■■□□□ 1.38
COL7A1-203ENST00000459756 MYOM2P54296 1465 aa23.66■■□□□ 1.38
COL7A1-203ENST00000459756 NRXN1Q9ULB1 1477 aa23.64■■□□□ 1.38
COL7A1-203ENST00000459756 MST1RQ04912 1400 aa23.63■■□□□ 1.37
COL7A1-203ENST00000459756 TECPR2O15040 1411 aa23.61■■□□□ 1.37
COL7A1-203ENST00000459756 ILDR2Q71H61 639 aa23.61■■□□□ 1.37
COL7A1-203ENST00000459756 BRINP3Q76B58 766 aa23.61■■□□□ 1.37
COL7A1-203ENST00000459756 AHDC1Q5TGY3 1603 aaPredicted RBP23.61■■□□□ 1.37
COL7A1-203ENST00000459756 LRPPRCP42704 1394 aaKnown RBP23.61■■□□□ 1.37
COL7A1-203ENST00000459756 ASXL1Q8IXJ9 1541 aa23.6■■□□□ 1.37
COL7A1-203ENST00000459756 LAMC1P11047 1609 aa23.6■■□□□ 1.37
COL7A1-203ENST00000459756 C14orf93Q9H972 538 aaKnown RBP23.6■■□□□ 1.37
COL7A1-203ENST00000459756 COL16A1Q07092 1604 aaPredicted RBP23.59■■□□□ 1.37
COL7A1-203ENST00000459756 ABCC11Q96J66 1382 aa23.59■■□□□ 1.37
COL7A1-203ENST00000459756 TMEM132EQ6IEE7 984 aa23.58■■□□□ 1.37
COL7A1-203ENST00000459756 STK26Q9P289 416 aa23.58■■□□□ 1.37
COL7A1-203ENST00000459756 KNDC1Q76NI1 1749 aa23.58■■□□□ 1.37
COL7A1-203ENST00000459756 JCADQ9P266 1359 aa23.57■■□□□ 1.36
COL7A1-203ENST00000459756 PHF23Q9BUL5 403 aaPredicted RBP23.57■■□□□ 1.36
COL7A1-203ENST00000459756 YTHDC2Q9H6S0 1430 aaKnown RBP23.57■■□□□ 1.36
COL7A1-203ENST00000459756 STAC3Q96MF2 364 aa23.56■■□□□ 1.36
COL7A1-203ENST00000459756 CFAP70Q5T0N1 1121 aa23.54■■□□□ 1.36
COL7A1-203ENST00000459756 C1orf167Q5SNV9 1468 aa23.54■■□□□ 1.36
COL7A1-203ENST00000459756 DCAF11Q8TEB1 546 aa23.53■■□□□ 1.36
COL7A1-203ENST00000459756 DHX57Q6P158 1386 aaKnown RBP23.52■■□□□ 1.36
COL7A1-203ENST00000459756 CDC42BPGQ6DT37 1551 aa23.52■■□□□ 1.36
COL7A1-203ENST00000459756 NHSL1Q5SYE7 1610 aa23.52■■□□□ 1.36
COL7A1-203ENST00000459756 WAPLQ7Z5K2 1190 aa23.51■■□□□ 1.35
COL7A1-203ENST00000459756 SIRT1Q96EB6 747 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms