RNA–Protein interactions for RNA: ENST00000453259.2

LYSMD3-202, Transcript of LysM domain containing 3, humanhuman

TSL 3

Gene LYSMD3, Length 553 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3-202ENST00000453259 SLC26A8Q96RN1 970 aa22.28■■□□□ 1.16
LYSMD3-202ENST00000453259 NCOA3Q9Y6Q9 1424 aa22.28■■□□□ 1.16
LYSMD3-202ENST00000453259 PLEKHG1Q9ULL1 1385 aa22.27■■□□□ 1.16
LYSMD3-202ENST00000453259 ZFYVE9O95405 1425 aa22.26■■□□□ 1.15
LYSMD3-202ENST00000453259 ANKRD50Q9ULJ7 1429 aa22.26■■□□□ 1.15
LYSMD3-202ENST00000453259 CHIC2Q9UKJ5 165 aa22.26■■□□□ 1.15
LYSMD3-202ENST00000453259 SLAIN2Q9P270 581 aa22.22■■□□□ 1.15
LYSMD3-202ENST00000453259 BCANQ96GW7 911 aa22.21■■□□□ 1.15
LYSMD3-202ENST00000453259 CHD2O14647 1828 aaKnown RBP22.21■■□□□ 1.15
LYSMD3-202ENST00000453259 JCADQ9P266 1359 aa22.21■■□□□ 1.15
LYSMD3-202ENST00000453259 GCC2Q8IWJ2 1684 aa22.2■■□□□ 1.15
LYSMD3-202ENST00000453259 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.2■■□□□ 1.14
LYSMD3-202ENST00000453259 RIMS2Q9UQ26 1411 aa22.2■■□□□ 1.14
LYSMD3-202ENST00000453259 DIP2AQ14689 1571 aa22.2■■□□□ 1.14
LYSMD3-202ENST00000453259 TMEM131LA2VDJ0 1609 aa22.2■■□□□ 1.14
LYSMD3-202ENST00000453259 PPP1R15AO75807 674 aaPredicted RBP22.19■■□□□ 1.14
LYSMD3-202ENST00000453259 TBX22Q9Y458 520 aa22.19■■□□□ 1.14
LYSMD3-202ENST00000453259 PIK3R4Q99570 1358 aa22.19■■□□□ 1.14
LYSMD3-202ENST00000453259 PHLPP1O60346 1717 aa22.18■■□□□ 1.14
LYSMD3-202ENST00000453259 UNC13BO14795 1591 aa22.18■■□□□ 1.14
LYSMD3-202ENST00000453259 POTEAQ6S8J7 498 aa22.17■■□□□ 1.14
LYSMD3-202ENST00000453259 COL16A1Q07092 1604 aaPredicted RBP22.13■■□□□ 1.13
LYSMD3-202ENST00000453259 MYO5BQ9ULV0 1848 aa22.13■■□□□ 1.13
LYSMD3-202ENST00000453259 SPATA31A6Q5VVP1 1343 aa22.13■■□□□ 1.13
LYSMD3-202ENST00000453259 FAM50AQ14320 339 aaKnown RBP22.13■■□□□ 1.13
LYSMD3-202ENST00000453259 RBM33Q96EV2 1170 aaKnown RBP22.13■■□□□ 1.13
LYSMD3-202ENST00000453259 ROCK1Q13464 1354 aa22.12■■□□□ 1.13
LYSMD3-202ENST00000453259 CADPS2Q86UW7 1296 aa22.12■■□□□ 1.13
LYSMD3-202ENST00000453259 AHDC1Q5TGY3 1603 aaPredicted RBP22.09■■□□□ 1.13
LYSMD3-202ENST00000453259 IQGAP3Q86VI3 1631 aa22.09■■□□□ 1.13
LYSMD3-202ENST00000453259 ADAMTS13Q76LX8 1427 aa22.09■■□□□ 1.13
LYSMD3-202ENST00000453259 C19orf44Q9H6X5 657 aa22.09■■□□□ 1.13
LYSMD3-202ENST00000453259 TRPM2O94759 1503 aa22.08■■□□□ 1.13
LYSMD3-202ENST00000453259 E9PCH4 1651 aa22.07■■□□□ 1.12
LYSMD3-202ENST00000453259 DCCP43146 1447 aa22.07■■□□□ 1.12
LYSMD3-202ENST00000453259 ATF3P18847 181 aa22.06■■□□□ 1.12
LYSMD3-202ENST00000453259 C14orf37Q86TY3 774 aa22.06■■□□□ 1.12
LYSMD3-202ENST00000453259 SHPRHQ149N8 1683 aa22.05■■□□□ 1.12
LYSMD3-202ENST00000453259 ZNF772Q68DY9 489 aaPredicted RBP22.05■■□□□ 1.12
LYSMD3-202ENST00000453259 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.05■■□□□ 1.12
LYSMD3-202ENST00000453259 CHGAP10645 457 aaKnown RBP22.01■■□□□ 1.11
LYSMD3-202ENST00000453259 LRP6O75581 1613 aa22■■□□□ 1.11
LYSMD3-202ENST00000453259 SETBP1Q9Y6X0 1596 aa21.99■■□□□ 1.11
LYSMD3-202ENST00000453259 MEX3CQ5U5Q3 659 aaKnown RBP21.98■■□□□ 1.11
LYSMD3-202ENST00000453259 NUP155O75694 1391 aa21.98■■□□□ 1.11
LYSMD3-202ENST00000453259 SETD1AO15047 1707 aaKnown RBP21.97■■□□□ 1.11
LYSMD3-202ENST00000453259 AMOTL2Q9Y2J4 779 aa21.97■■□□□ 1.11
LYSMD3-202ENST00000453259 CDK12Q9NYV4 1490 aaPredicted RBP21.96■■□□□ 1.11
LYSMD3-202ENST00000453259 XRN1Q8IZH2 1706 aaKnown RBP21.96■■□□□ 1.11
LYSMD3-202ENST00000453259 BRINP3Q76B58 766 aa21.94■■□□□ 1.1
LYSMD3-202ENST00000453259 SETD5Q9C0A6 1442 aa21.94■■□□□ 1.1
LYSMD3-202ENST00000453259 ASXL1Q8IXJ9 1541 aa21.93■■□□□ 1.1
LYSMD3-202ENST00000453259 PTPRUQ92729 1446 aa21.93■■□□□ 1.1
LYSMD3-202ENST00000453259 NRXN3Q9Y4C0 1643 aa21.91■■□□□ 1.1
LYSMD3-202ENST00000453259 NUTM2DQ5VT03 806 aaPredicted RBP21.91■■□□□ 1.1
LYSMD3-202ENST00000453259 SPHKAPQ2M3C7 1700 aa21.91■■□□□ 1.1
LYSMD3-202ENST00000453259 NHSL1Q5SYE7 1610 aa21.9■■□□□ 1.1
LYSMD3-202ENST00000453259 MST1RQ04912 1400 aa21.89■■□□□ 1.1
LYSMD3-202ENST00000453259 RXRBP28702 533 aa21.89■■□□□ 1.09
LYSMD3-202ENST00000453259 ADGRL3Q9HAR2 1447 aa21.88■■□□□ 1.09
LYSMD3-202ENST00000453259 UPF1Q92900 1129 aaKnown RBP eCLIP21.87■■□□□ 1.09
LYSMD3-202ENST00000453259 LRRC59Q96AG4 307 aaKnown RBP21.87■■□□□ 1.09
LYSMD3-202ENST00000453259 TRIM52Q96A61 297 aa21.83■■□□□ 1.09
LYSMD3-202ENST00000453259 METP08581 1390 aa21.83■■□□□ 1.08
LYSMD3-202ENST00000453259 ZNF326Q5BKZ1 582 aaKnown RBP21.82■■□□□ 1.08
LYSMD3-202ENST00000453259 NEXMIFQ5QGS0 1516 aa21.81■■□□□ 1.08
LYSMD3-202ENST00000453259 AFF2P51816 1311 aa21.8■■□□□ 1.08
LYSMD3-202ENST00000453259 PRAG1Q86YV5 1406 aa21.8■■□□□ 1.08
LYSMD3-202ENST00000453259 LAMC1P11047 1609 aa21.8■■□□□ 1.08
LYSMD3-202ENST00000453259 PTCH1Q13635 1447 aa21.8■■□□□ 1.08
LYSMD3-202ENST00000453259 PNPLA6Q8IY17 1366 aa21.79■■□□□ 1.08
LYSMD3-202ENST00000453259 NUTM2BA6NNL0 878 aaPredicted RBP21.79■■□□□ 1.08
LYSMD3-202ENST00000453259 NUTM2EB1AL46 878 aaPredicted RBP21.79■■□□□ 1.08
LYSMD3-202ENST00000453259 NUTM2AQ8IVF1 878 aaPredicted RBP21.79■■□□□ 1.08
LYSMD3-202ENST00000453259 NALCNQ8IZF0 1738 aa21.77■■□□□ 1.08
LYSMD3-202ENST00000453259 CLTCL1P53675 1640 aa21.77■■□□□ 1.07
LYSMD3-202ENST00000453259 RBM6P78332 1123 aaKnown RBP21.76■■□□□ 1.07
LYSMD3-202ENST00000453259 KIF1BO60333 1816 aa21.75■■□□□ 1.07
LYSMD3-202ENST00000453259 ITGAEP38570 1179 aa21.74■■□□□ 1.07
LYSMD3-202ENST00000453259 C1orf167Q5SNV9 1468 aa21.74■■□□□ 1.07
LYSMD3-202ENST00000453259 VGFO15240 615 aaPredicted RBP21.73■■□□□ 1.07
LYSMD3-202ENST00000453259 C8orf37Q96NL8 207 aa21.72■■□□□ 1.07
LYSMD3-202ENST00000453259 RGS12O14924 1447 aa21.72■■□□□ 1.07
LYSMD3-202ENST00000453259 NGLY1Q96IV0 654 aa21.71■■□□□ 1.07
LYSMD3-202ENST00000453259 RPGRIP1LQ68CZ1 1315 aa21.71■■□□□ 1.07
LYSMD3-202ENST00000453259 QTRT2Q9H974 415 aaKnown RBP21.7■■□□□ 1.06
LYSMD3-202ENST00000453259 SOS2Q07890 1332 aaPredicted RBP21.7■■□□□ 1.06
LYSMD3-202ENST00000453259 HFM1A2PYH4 1435 aa21.7■■□□□ 1.06
LYSMD3-202ENST00000453259 NAIPQ13075 1403 aa21.67■■□□□ 1.06
LYSMD3-202ENST00000453259 RRBP1Q9P2E9 1410 aaKnown RBP21.67■■□□□ 1.06
LYSMD3-202ENST00000453259 ROBO2Q9HCK4 1378 aa21.65■■□□□ 1.06
LYSMD3-202ENST00000453259 COL22A1Q8NFW1 1626 aaPredicted RBP21.65■■□□□ 1.06
LYSMD3-202ENST00000453259 ATAD2Q6PL18 1390 aa21.64■■□□□ 1.06
LYSMD3-202ENST00000453259 FOXD1Q16676 465 aa21.64■■□□□ 1.05
LYSMD3-202ENST00000453259 CDC42BPGQ6DT37 1551 aa21.63■■□□□ 1.05
LYSMD3-202ENST00000453259 DDX17Q92841 729 aaKnown RBP21.63■■□□□ 1.05
LYSMD3-202ENST00000453259 FNBP4Q8N3X1 1017 aaPredicted RBP21.62■■□□□ 1.05
LYSMD3-202ENST00000453259 TRPC5Q9UL62 973 aaPredicted RBP21.62■■□□□ 1.05
LYSMD3-202ENST00000453259 NPHP3Q7Z494 1330 aa21.6■■□□□ 1.05
LYSMD3-202ENST00000453259 ADAMTS2O95450 1211 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms