RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 ACIN1Q9UKV3 1341 aaKnown RBP29.76■■■□□ 2.36
COL9A3-202ENST00000452372 ADGRB3O60242 1522 aa29.75■■■□□ 2.35
COL9A3-202ENST00000452372 XIRP1Q702N8 1843 aaKnown RBP29.74■■■□□ 2.35
COL9A3-202ENST00000452372 SLC26A8Q96RN1 970 aa29.72■■■□□ 2.35
COL9A3-202ENST00000452372 SLC4A1APQ9BWU0 796 aaKnown RBP29.72■■■□□ 2.35
COL9A3-202ENST00000452372 MYO5BQ9ULV0 1848 aa29.71■■■□□ 2.35
COL9A3-202ENST00000452372 RAB3GAP2Q9H2M9 1393 aa29.7■■■□□ 2.35
COL9A3-202ENST00000452372 KCNA6P17658 529 aa29.68■■■□□ 2.34
COL9A3-202ENST00000452372 ZFYVE9O95405 1425 aa29.67■■■□□ 2.34
COL9A3-202ENST00000452372 TMEM131LA2VDJ0 1609 aa29.66■■■□□ 2.34
COL9A3-202ENST00000452372 SPHKAPQ2M3C7 1700 aa29.65■■■□□ 2.34
COL9A3-202ENST00000452372 HRCP23327 699 aa29.64■■■□□ 2.34
COL9A3-202ENST00000452372 MPHOSPH9Q99550 1183 aa29.64■■■□□ 2.34
COL9A3-202ENST00000452372 SOCS7O14512 581 aa29.63■■■□□ 2.33
COL9A3-202ENST00000452372 RIMS2Q9UQ26 1411 aa29.61■■■□□ 2.33
COL9A3-202ENST00000452372 TMEM94Q12767 1356 aa29.6■■■□□ 2.33
COL9A3-202ENST00000452372 SENP3Q9H4L4 574 aaPredicted RBP29.59■■■□□ 2.33
COL9A3-202ENST00000452372 RBM33Q96EV2 1170 aaKnown RBP29.58■■■□□ 2.33
COL9A3-202ENST00000452372 PLEKHG1Q9ULL1 1385 aa29.58■■■□□ 2.33
COL9A3-202ENST00000452372 PROSER2Q86WR7 435 aaPredicted RBP29.57■■■□□ 2.32
COL9A3-202ENST00000452372 TRPM2O94759 1503 aa29.56■■■□□ 2.32
COL9A3-202ENST00000452372 MED1Q15648 1581 aaPredicted RBP29.56■■■□□ 2.32
COL9A3-202ENST00000452372 CHGAP10645 457 aaKnown RBP29.55■■■□□ 2.32
COL9A3-202ENST00000452372 HDGFP51858 240 aaKnown RBP29.55■■■□□ 2.32
COL9A3-202ENST00000452372 BCANQ96GW7 911 aa29.55■■■□□ 2.32
COL9A3-202ENST00000452372 FOXD1Q16676 465 aa29.54■■■□□ 2.32
COL9A3-202ENST00000452372 NWD1Q149M9 1564 aa29.53■■■□□ 2.32
COL9A3-202ENST00000452372 TBX22Q9Y458 520 aa29.52■■■□□ 2.32
COL9A3-202ENST00000452372 CHD2O14647 1828 aaKnown RBP29.52■■■□□ 2.32
COL9A3-202ENST00000452372 NUTM2DQ5VT03 806 aaPredicted RBP29.51■■■□□ 2.31
COL9A3-202ENST00000452372 CLTCL1P53675 1640 aa29.5■■■□□ 2.31
COL9A3-202ENST00000452372 PPP1R15AO75807 674 aaPredicted RBP29.5■■■□□ 2.31
COL9A3-202ENST00000452372 TRIM26Q12899 539 aaPredicted RBP29.5■■■□□ 2.31
COL9A3-202ENST00000452372 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.5■■■□□ 2.31
COL9A3-202ENST00000452372 FAM135BQ49AJ0 1406 aa29.5■■■□□ 2.31
COL9A3-202ENST00000452372 NKTRP30414 1462 aaKnown RBP29.48■■■□□ 2.31
COL9A3-202ENST00000452372 ADAMTS13Q76LX8 1427 aa29.48■■■□□ 2.31
COL9A3-202ENST00000452372 KIF1BO60333 1816 aa29.44■■■□□ 2.3
COL9A3-202ENST00000452372 CCDC144AA2RUR9 1427 aa29.39■■■□□ 2.3
COL9A3-202ENST00000452372 ZNF326Q5BKZ1 582 aaKnown RBP29.39■■■□□ 2.3
COL9A3-202ENST00000452372 SLAIN2Q9P270 581 aa29.37■■■□□ 2.29
COL9A3-202ENST00000452372 MSH6P52701 1360 aa29.37■■■□□ 2.29
COL9A3-202ENST00000452372 ROBO1Q9Y6N7 1651 aa29.36■■■□□ 2.29
COL9A3-202ENST00000452372 PIK3R4Q99570 1358 aa29.35■■■□□ 2.29
COL9A3-202ENST00000452372 PTPRUQ92729 1446 aa29.34■■■□□ 2.29
COL9A3-202ENST00000452372 DIP2AQ14689 1571 aa29.34■■■□□ 2.29
COL9A3-202ENST00000452372 NCOA3Q9Y6Q9 1424 aa29.33■■■□□ 2.29
COL9A3-202ENST00000452372 ANKRD30BQ9BXX2 1392 aa29.32■■■□□ 2.28
COL9A3-202ENST00000452372 RGS17Q9UGC6 210 aaPredicted RBP29.31■■■□□ 2.28
COL9A3-202ENST00000452372 NRXN3Q9Y4C0 1643 aa29.31■■■□□ 2.28
COL9A3-202ENST00000452372 RPGRIP1LQ68CZ1 1315 aa29.3■■■□□ 2.28
COL9A3-202ENST00000452372 AMOTL2Q9Y2J4 779 aa29.3■■■□□ 2.28
COL9A3-202ENST00000452372 NEXMIFQ5QGS0 1516 aa29.3■■■□□ 2.28
COL9A3-202ENST00000452372 PHF23Q9BUL5 403 aaPredicted RBP29.29■■■□□ 2.28
COL9A3-202ENST00000452372 SPATA31E1Q6ZUB1 1445 aa29.27■■■□□ 2.28
COL9A3-202ENST00000452372 C19orf44Q9H6X5 657 aa29.26■■■□□ 2.27
COL9A3-202ENST00000452372 SETBP1Q9Y6X0 1596 aa29.26■■■□□ 2.27
COL9A3-202ENST00000452372 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.24■■■□□ 2.27
COL9A3-202ENST00000452372 VGFO15240 615 aaPredicted RBP29.23■■■□□ 2.27
COL9A3-202ENST00000452372 RGL3Q3MIN7 710 aa29.22■■■□□ 2.27
COL9A3-202ENST00000452372 METP08581 1390 aa29.22■■■□□ 2.27
COL9A3-202ENST00000452372 C14orf37Q86TY3 774 aa29.2■■■□□ 2.26
COL9A3-202ENST00000452372 PPLO60437 1756 aa29.19■■■□□ 2.26
COL9A3-202ENST00000452372 XRN1Q8IZH2 1706 aaKnown RBP29.18■■■□□ 2.26
COL9A3-202ENST00000452372 CADPS2Q86UW7 1296 aa29.18■■■□□ 2.26
COL9A3-202ENST00000452372 PHLPP1O60346 1717 aa29.17■■■□□ 2.26
COL9A3-202ENST00000452372 ATF3P18847 181 aa29.15■■■□□ 2.26
COL9A3-202ENST00000452372 IFT172Q9UG01 1749 aa29.12■■■□□ 2.25
COL9A3-202ENST00000452372 COL16A1Q07092 1604 aaPredicted RBP29.12■■■□□ 2.25
COL9A3-202ENST00000452372 JCADQ9P266 1359 aa29.1■■■□□ 2.25
COL9A3-202ENST00000452372 POTEAQ6S8J7 498 aa29.09■■■□□ 2.25
COL9A3-202ENST00000452372 BRINP3Q76B58 766 aa29.08■■■□□ 2.25
COL9A3-202ENST00000452372 ADGRF5Q8IZF2 1346 aa29.08■■■□□ 2.25
COL9A3-202ENST00000452372 DCCP43146 1447 aa29.07■■■□□ 2.24
COL9A3-202ENST00000452372 DHX57Q6P158 1386 aaKnown RBP29.07■■■□□ 2.24
COL9A3-202ENST00000452372 AHDC1Q5TGY3 1603 aaPredicted RBP29.05■■■□□ 2.24
COL9A3-202ENST00000452372 SETD1AO15047 1707 aaKnown RBP29.04■■■□□ 2.24
COL9A3-202ENST00000452372 PCGF6Q9BYE7 350 aa29.03■■■□□ 2.24
COL9A3-202ENST00000452372 MST1RQ04912 1400 aa29.03■■■□□ 2.24
COL9A3-202ENST00000452372 MYOM2P54296 1465 aa29■■■□□ 2.23
COL9A3-202ENST00000452372 STAC3Q96MF2 364 aa28.99■■■□□ 2.23
COL9A3-202ENST00000452372 PIK3C2GO75747 1445 aa28.99■■■□□ 2.23
COL9A3-202ENST00000452372 ADGRL3Q9HAR2 1447 aa28.99■■■□□ 2.23
COL9A3-202ENST00000452372 NRXN1Q9ULB1 1477 aa28.98■■■□□ 2.23
COL9A3-202ENST00000452372 DCAF11Q8TEB1 546 aa28.98■■■□□ 2.23
COL9A3-202ENST00000452372 LRP6O75581 1613 aa28.97■■■□□ 2.23
COL9A3-202ENST00000452372 ROBO2Q9HCK4 1378 aa28.97■■■□□ 2.23
COL9A3-202ENST00000452372 NALCNQ8IZF0 1738 aa28.96■■■□□ 2.23
COL9A3-202ENST00000452372 SPATA31A6Q5VVP1 1343 aa28.95■■■□□ 2.23
COL9A3-202ENST00000452372 ASXL1Q8IXJ9 1541 aa28.95■■■□□ 2.23
COL9A3-202ENST00000452372 SIN3AQ96ST3 1273 aa28.94■■■□□ 2.22
COL9A3-202ENST00000452372 KDM2AQ9Y2K7 1162 aa28.94■■■□□ 2.22
COL9A3-202ENST00000452372 SHPRHQ149N8 1683 aa28.93■■■□□ 2.22
COL9A3-202ENST00000452372 PTCH1Q13635 1447 aa28.93■■■□□ 2.22
COL9A3-202ENST00000452372 PRAG1Q86YV5 1406 aa28.93■■■□□ 2.22
COL9A3-202ENST00000452372 C14orf93Q9H972 538 aaKnown RBP28.92■■■□□ 2.22
COL9A3-202ENST00000452372 DDX17Q92841 729 aaKnown RBP28.91■■■□□ 2.22
COL9A3-202ENST00000452372 NHSL1Q5SYE7 1610 aa28.9■■■□□ 2.22
COL9A3-202ENST00000452372 CFAP70Q5T0N1 1121 aa28.88■■■□□ 2.21
COL9A3-202ENST00000452372 C1orf167Q5SNV9 1468 aa28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms