RNA–Protein interactions for RNA: ENST00000448940.5

CDC42BPA-209, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 7,355 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-209ENST00000448940 IDI1Q13907 227 aa7.37□□□□□ -1.23
CDC42BPA-209ENST00000448940 UHRF1BP1LA0JNW5 1464 aa7.37□□□□□ -1.23
CDC42BPA-209ENST00000448940 FOXO3O43524 673 aa7.36□□□□□ -1.23
CDC42BPA-209ENST00000448940 CCDC141Q6ZP82 1450 aa7.36□□□□□ -1.23
CDC42BPA-209ENST00000448940 CDK13Q14004 1512 aaKnown RBP7.36□□□□□ -1.23
CDC42BPA-209ENST00000448940 TMEM132EQ6IEE7 984 aa7.36□□□□□ -1.23
CDC42BPA-209ENST00000448940 DDX54Q8TDD1 881 aaKnown RBP7.36□□□□□ -1.23
CDC42BPA-209ENST00000448940 ATP10AO60312 1499 aa7.36□□□□□ -1.23
CDC42BPA-209ENST00000448940 CNKSR2Q8WXI2 1034 aa7.36□□□□□ -1.23
CDC42BPA-209ENST00000448940 CENPBP07199 599 aaPredicted RBP7.36□□□□□ -1.23
CDC42BPA-209ENST00000448940 KIF21BO75037 1637 aa7.36□□□□□ -1.23
CDC42BPA-209ENST00000448940 NEO1Q92859 1461 aa7.36□□□□□ -1.23
CDC42BPA-209ENST00000448940 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.36□□□□□ -1.23
CDC42BPA-209ENST00000448940 KDM6BO15054 1643 aa7.35□□□□□ -1.23
CDC42BPA-209ENST00000448940 CHMP3Q9Y3E7 222 aa7.35□□□□□ -1.23
CDC42BPA-209ENST00000448940 NPHP3Q7Z494 1330 aa7.35□□□□□ -1.23
CDC42BPA-209ENST00000448940 KIF14Q15058 1648 aa7.35□□□□□ -1.23
CDC42BPA-209ENST00000448940 STK32BQ9NY57 414 aa7.35□□□□□ -1.23
CDC42BPA-209ENST00000448940 CLSTN1O94985 981 aa7.35□□□□□ -1.23
CDC42BPA-209ENST00000448940 FGD6Q6ZV73 1430 aa7.34□□□□□ -1.23
CDC42BPA-209ENST00000448940 KCNJ4P48050 445 aa7.34□□□□□ -1.23
CDC42BPA-209ENST00000448940 MIA2Q96PC5 1412 aa7.34□□□□□ -1.23
CDC42BPA-209ENST00000448940 SIN3AQ96ST3 1273 aa7.34□□□□□ -1.23
CDC42BPA-209ENST00000448940 CENPJQ9HC77 1338 aaPredicted RBP7.34□□□□□ -1.23
CDC42BPA-209ENST00000448940 TTC5Q8N0Z6 440 aa7.34□□□□□ -1.23
CDC42BPA-209ENST00000448940 PHF8Q9UPP1 1060 aa7.34□□□□□ -1.23
CDC42BPA-209ENST00000448940 MAP3K9P80192 1104 aa7.34□□□□□ -1.23
CDC42BPA-209ENST00000448940 PRAM1Q96QH2 718 aa7.34□□□□□ -1.24
CDC42BPA-209ENST00000448940 QTRT2Q9H974 415 aaKnown RBP7.34□□□□□ -1.24
CDC42BPA-209ENST00000448940 A2MP01023 1474 aa7.33□□□□□ -1.24
CDC42BPA-209ENST00000448940 TAOK2Q9UL54 1235 aa7.33□□□□□ -1.24
CDC42BPA-209ENST00000448940 USP21Q9UK80 565 aa7.33□□□□□ -1.24
CDC42BPA-209ENST00000448940 ZC3H6P61129 1189 aaKnown RBP7.33□□□□□ -1.24
CDC42BPA-209ENST00000448940 RBM42Q9BTD8 480 aaKnown RBP7.32□□□□□ -1.24
CDC42BPA-209ENST00000448940 SALL2Q9Y467 1007 aaPredicted RBP7.32□□□□□ -1.24
CDC42BPA-209ENST00000448940 TEFQ10587 303 aa7.32□□□□□ -1.24
CDC42BPA-209ENST00000448940 MYCNP04198 464 aaPredicted RBP7.32□□□□□ -1.24
CDC42BPA-209ENST00000448940 RRBP1Q9P2E9 1410 aaKnown RBP7.32□□□□□ -1.24
CDC42BPA-209ENST00000448940 EHBP1L1Q8N3D4 1523 aa7.32□□□□□ -1.24
CDC42BPA-209ENST00000448940 KCNA6P17658 529 aa7.32□□□□□ -1.24
CDC42BPA-209ENST00000448940 OS9Q13438 667 aaPredicted RBP7.31□□□□□ -1.24
CDC42BPA-209ENST00000448940 KRT28Q7Z3Y7 464 aa7.31□□□□□ -1.24
CDC42BPA-209ENST00000448940 NGEFQ8N5V2 710 aa7.31□□□□□ -1.24
CDC42BPA-209ENST00000448940 ZNF219Q9P2Y4 722 aaPredicted RBP7.31□□□□□ -1.24
CDC42BPA-209ENST00000448940 ANKRD30BQ9BXX2 1392 aa7.31□□□□□ -1.24
CDC42BPA-209ENST00000448940 APBA3O96018 575 aa7.31□□□□□ -1.24
CDC42BPA-209ENST00000448940 CFAP70Q5T0N1 1121 aa7.31□□□□□ -1.24
CDC42BPA-209ENST00000448940 UGGT2Q9NYU1 1516 aa7.31□□□□□ -1.24
CDC42BPA-209ENST00000448940 SLAIN2Q9P270 581 aa7.3□□□□□ -1.24
CDC42BPA-209ENST00000448940 TATP17735 454 aaPredicted RBP7.3□□□□□ -1.24
CDC42BPA-209ENST00000448940 CDK11BP21127 795 aaKnown RBP7.3□□□□□ -1.24
CDC42BPA-209ENST00000448940 SAMD1Q6SPF0 538 aaPredicted RBP7.3□□□□□ -1.24
CDC42BPA-209ENST00000448940 ZNF692Q9BU19 519 aaPredicted RBP7.3□□□□□ -1.24
CDC42BPA-209ENST00000448940 RIMBP3CA6NJZ7 1639 aa7.3□□□□□ -1.24
CDC42BPA-209ENST00000448940 RIMBP3BA6NNM3 1639 aa7.3□□□□□ -1.24
CDC42BPA-209ENST00000448940 RIMBP3Q9UFD9 1639 aa7.3□□□□□ -1.24
CDC42BPA-209ENST00000448940 BIN2Q9UBW5 565 aaPredicted RBP7.3□□□□□ -1.24
CDC42BPA-209ENST00000448940 TRAPPC8Q9Y2L5 1435 aa7.3□□□□□ -1.24
CDC42BPA-209ENST00000448940 CC2D1BQ5T0F9 858 aaKnown RBP7.3□□□□□ -1.24
CDC42BPA-209ENST00000448940 CFAP65Q6ZU64 1925 aaKnown RBP7.3□□□□□ -1.24
CDC42BPA-209ENST00000448940 FAM177BA6PVY3 158 aa7.29□□□□□ -1.24
CDC42BPA-209ENST00000448940 YY1P25490 414 aa7.29□□□□□ -1.24
CDC42BPA-209ENST00000448940 LRRC9Q6ZRR7 1453 aa7.29□□□□□ -1.24
CDC42BPA-209ENST00000448940 RAD21O60216 631 aa7.29□□□□□ -1.24
CDC42BPA-209ENST00000448940 KCNH5Q8NCM2 988 aa7.29□□□□□ -1.24
CDC42BPA-209ENST00000448940 AK7Q96M32 723 aa7.29□□□□□ -1.24
CDC42BPA-209ENST00000448940 U2AF1L5P0DN76 240 aaPredicted RBP7.29□□□□□ -1.24
CDC42BPA-209ENST00000448940 U2AF1Q01081 240 aaKnown RBP eCLIP7.29□□□□□ -1.247e-7■■■■□ 23.3
CDC42BPA-209ENST00000448940 DDX10Q13206 875 aaKnown RBP7.29□□□□□ -1.24
CDC42BPA-209ENST00000448940 MYH16Q9H6N6 1097 aa7.29□□□□□ -1.24
CDC42BPA-209ENST00000448940 TFCP2L1Q9NZI6 479 aa7.29□□□□□ -1.24
CDC42BPA-209ENST00000448940 TIMELESSQ9UNS1 1208 aa7.29□□□□□ -1.24
CDC42BPA-209ENST00000448940 EXOC5O00471 708 aa7.28□□□□□ -1.24
CDC42BPA-209ENST00000448940 VPS37DQ86XT2 251 aa7.28□□□□□ -1.24
CDC42BPA-209ENST00000448940 TBX22Q9Y458 520 aa7.28□□□□□ -1.24
CDC42BPA-209ENST00000448940 HFM1A2PYH4 1435 aa7.28□□□□□ -1.24
CDC42BPA-209ENST00000448940 L3MBTL2Q969R5 705 aa7.28□□□□□ -1.24
CDC42BPA-209ENST00000448940 RTEL1-TNFRSF6BF6WH68 1400 aa7.28□□□□□ -1.24
CDC42BPA-209ENST00000448940 ZFYVE16Q7Z3T8 1539 aa7.28□□□□□ -1.24
CDC42BPA-209ENST00000448940 NOL10Q9BSC4 688 aaKnown RBP7.28□□□□□ -1.24
CDC42BPA-209ENST00000448940 CCDC61Q9Y6R9 512 aa7.28□□□□□ -1.24
CDC42BPA-209ENST00000448940 BIVM-ERCC5R4GMW8 1640 aa7.28□□□□□ -1.24
CDC42BPA-209ENST00000448940 GORABQ5T7V8 394 aa7.27□□□□□ -1.24
CDC42BPA-209ENST00000448940 RAB3GAP2Q9H2M9 1393 aa7.27□□□□□ -1.25
CDC42BPA-209ENST00000448940 ERBINQ96RT1 1412 aa7.27□□□□□ -1.25
CDC42BPA-209ENST00000448940 CGNL1Q0VF96 1302 aa7.27□□□□□ -1.25
CDC42BPA-209ENST00000448940 ZPR1O75312 459 aa7.27□□□□□ -1.25
CDC42BPA-209ENST00000448940 CALD1Q05682 793 aaKnown RBP7.27□□□□□ -1.25
CDC42BPA-209ENST00000448940 MRS2Q9HD23 443 aa7.27□□□□□ -1.25
CDC42BPA-209ENST00000448940 PHF14O94880 888 aa7.27□□□□□ -1.25
CDC42BPA-209ENST00000448940 CDK19Q9BWU1 502 aa7.27□□□□□ -1.25
CDC42BPA-209ENST00000448940 KIAA1107Q9UPP5 1409 aa7.27□□□□□ -1.25
CDC42BPA-209ENST00000448940 KIAA0556O60303 1618 aa7.27□□□□□ -1.25
CDC42BPA-209ENST00000448940 LMOD1P29536 600 aaPredicted RBP7.26□□□□□ -1.25
CDC42BPA-209ENST00000448940 FAM9BQ8IZU0 186 aa7.26□□□□□ -1.25
CDC42BPA-209ENST00000448940 CABP2Q9NPB3 220 aa7.26□□□□□ -1.25
CDC42BPA-209ENST00000448940 MAGI2Q86UL8 1455 aa7.26□□□□□ -1.25
CDC42BPA-209ENST00000448940 ZNF335Q9H4Z2 1342 aaPredicted RBP7.26□□□□□ -1.25
CDC42BPA-209ENST00000448940 SMG6Q86US8 1419 aaKnown RBP7.26□□□□□ -1.25
CDC42BPA-209ENST00000448940 CHD1O14646 1710 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms