RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 TPM2P07951 284 aa14.83□□□□□ -0.03
CCDC88A-207ENST00000436346 ATF3P18847 181 aa14.83□□□□□ -0.04
CCDC88A-207ENST00000436346 L3MBTL2Q969R5 705 aa14.83□□□□□ -0.04
CCDC88A-207ENST00000436346 MYBBP1AQ9BQG0 1328 aaKnown RBP14.82□□□□□ -0.04
CCDC88A-207ENST00000436346 PANK3Q9H999 370 aa14.82□□□□□ -0.04
CCDC88A-207ENST00000436346 WWC1Q8IX03 1113 aa14.82□□□□□ -0.04
CCDC88A-207ENST00000436346 FAM184AQ8NB25 1140 aa14.82□□□□□ -0.04
CCDC88A-207ENST00000436346 MIA2Q96PC5 1412 aa14.82□□□□□ -0.04
CCDC88A-207ENST00000436346 DHX16O60231 1041 aaKnown RBP14.82□□□□□ -0.04
CCDC88A-207ENST00000436346 SYNE3Q6ZMZ3 975 aa14.82□□□□□ -0.04
CCDC88A-207ENST00000436346 BCL2L13Q9BXK5 485 aa14.82□□□□□ -0.04
CCDC88A-207ENST00000436346 JPH4Q96JJ6 628 aa14.81□□□□□ -0.04
CCDC88A-207ENST00000436346 FOXD4L6Q3SYB3 417 aaPredicted RBP14.81□□□□□ -0.04
CCDC88A-207ENST00000436346 FOXD4L3Q6VB84 417 aaPredicted RBP14.81□□□□□ -0.04
CCDC88A-207ENST00000436346 VGFO15240 615 aaPredicted RBP14.81□□□□□ -0.04
CCDC88A-207ENST00000436346 ANKRD45Q5TZF3 282 aa14.81□□□□□ -0.04
CCDC88A-207ENST00000436346 ROCK1Q13464 1354 aa14.81□□□□□ -0.04
CCDC88A-207ENST00000436346 GOLGA6L3A6NEY3 463 aa14.8□□□□□ -0.04
CCDC88A-207ENST00000436346 FBXO3Q9UK99 471 aa14.8□□□□□ -0.04
CCDC88A-207ENST00000436346 CCDC43Q96MW1 224 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-207ENST00000436346 CC2D2AQ9P2K1 1620 aa14.79□□□□□ -0.04
CCDC88A-207ENST00000436346 SAMD1Q6SPF0 538 aaPredicted RBP14.79□□□□□ -0.04
CCDC88A-207ENST00000436346 RBM33Q96EV2 1170 aaKnown RBP14.78□□□□□ -0.04
CCDC88A-207ENST00000436346 ELL2O00472 640 aaPredicted RBP14.78□□□□□ -0.04
CCDC88A-207ENST00000436346 RBM19Q9Y4C8 960 aaKnown RBP14.78□□□□□ -0.04
CCDC88A-207ENST00000436346 TPM1P09493 284 aa14.78□□□□□ -0.04
CCDC88A-207ENST00000436346 ATAD2BQ9ULI0 1458 aa14.78□□□□□ -0.04
CCDC88A-207ENST00000436346 ST20-MTHFSA0A0A6YYL1 179 aa14.78□□□□□ -0.04
CCDC88A-207ENST00000436346 OSCARQ8IYS5 282 aa14.77□□□□□ -0.04
CCDC88A-207ENST00000436346 USP35Q9P2H5 1018 aa14.77□□□□□ -0.04
CCDC88A-207ENST00000436346 TRIM29Q14134 588 aa14.77□□□□□ -0.04
CCDC88A-207ENST00000436346 ANO2Q9NQ90 1003 aa14.76□□□□□ -0.05
CCDC88A-207ENST00000436346 GOLGA6L19H0YKK7 550 aa14.76□□□□□ -0.05
CCDC88A-207ENST00000436346 NFXL1Q6ZNB6 911 aa14.76□□□□□ -0.05
CCDC88A-207ENST00000436346 CCAR2Q8N163 923 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-207ENST00000436346 ATP6V1DQ9Y5K8 247 aa14.76□□□□□ -0.05
CCDC88A-207ENST00000436346 IFIT2P09913 472 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-207ENST00000436346 FAM69CQ0P6D2 419 aa14.75□□□□□ -0.05
CCDC88A-207ENST00000436346 SMG6Q86US8 1419 aaKnown RBP14.75□□□□□ -0.05
CCDC88A-207ENST00000436346 DDX11L8A8MPP1 907 aa14.75□□□□□ -0.05
CCDC88A-207ENST00000436346 DDX58O95786 925 aaKnown RBP14.74□□□□□ -0.05
CCDC88A-207ENST00000436346 PCMTD1Q96MG8 357 aaPredicted RBP14.74□□□□□ -0.05
CCDC88A-207ENST00000436346 RRBP1Q9P2E9 1410 aaKnown RBP14.74□□□□□ -0.05
CCDC88A-207ENST00000436346 NUTM2GQ5VZR2 741 aa14.74□□□□□ -0.05
CCDC88A-207ENST00000436346 CPLX1O14810 134 aa14.74□□□□□ -0.05
CCDC88A-207ENST00000436346 RUFY2Q8WXA3 655 aa14.74□□□□□ -0.05
CCDC88A-207ENST00000436346 RAD54L2Q9Y4B4 1467 aa14.73□□□□□ -0.05
CCDC88A-207ENST00000436346 CHMP4CQ96CF2 233 aa14.73□□□□□ -0.05
CCDC88A-207ENST00000436346 FYB1O15117 783 aa14.73□□□□□ -0.05
CCDC88A-207ENST00000436346 ZKSCAN2Q63HK3 967 aa14.73□□□□□ -0.05
CCDC88A-207ENST00000436346 DCAF8L1A6NGE4 600 aa14.72□□□□□ -0.05
CCDC88A-207ENST00000436346 ERICH2A1L162 156 aa14.72□□□□□ -0.05
CCDC88A-207ENST00000436346 CTTNBP2Q8WZ74 1663 aa14.72□□□□□ -0.05
CCDC88A-207ENST00000436346 CCDC70Q6NSX1 233 aa14.72□□□□□ -0.05
CCDC88A-207ENST00000436346 E9PSI1 815 aa14.72□□□□□ -0.05
CCDC88A-207ENST00000436346 TRDNQ13061 729 aa14.72□□□□□ -0.05
CCDC88A-207ENST00000436346 PDE3BQ13370 1112 aa14.72□□□□□ -0.05
CCDC88A-207ENST00000436346 FOSBP53539 338 aa14.71□□□□□ -0.05
CCDC88A-207ENST00000436346 HOOK1Q9UJC3 728 aaKnown RBP14.71□□□□□ -0.05
CCDC88A-207ENST00000436346 MYOM3Q5VTT5 1437 aa14.71□□□□□ -0.05
CCDC88A-207ENST00000436346 PLIN1O60240 522 aa14.71□□□□□ -0.06
CCDC88A-207ENST00000436346 REC8O95072 547 aa14.71□□□□□ -0.06
CCDC88A-207ENST00000436346 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.71□□□□□ -0.06
CCDC88A-207ENST00000436346 ZKSCAN1P17029 563 aaPredicted RBP14.7□□□□□ -0.06
CCDC88A-207ENST00000436346 G3BP1Q13283 466 aaKnown RBP eCLIP14.7□□□□□ -0.06
CCDC88A-207ENST00000436346 BECN2A8MW95 431 aa14.7□□□□□ -0.06
CCDC88A-207ENST00000436346 FKBP5Q13451 457 aaPredicted RBP14.7□□□□□ -0.06
CCDC88A-207ENST00000436346 PPP1R1BQ9UD71 204 aaPredicted RBP14.7□□□□□ -0.06
CCDC88A-207ENST00000436346 TNNT3P45378 269 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-207ENST00000436346 ANKRD20A12PQ8NF67 263 aa14.69□□□□□ -0.06
CCDC88A-207ENST00000436346 KIF14Q15058 1648 aa14.69□□□□□ -0.06
CCDC88A-207ENST00000436346 ERICH3Q5RHP9 1530 aa14.69□□□□□ -0.06
CCDC88A-207ENST00000436346 CENPQQ7L2Z9 268 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-207ENST00000436346 FYCO1Q9BQS8 1478 aa14.69□□□□□ -0.06
CCDC88A-207ENST00000436346 CCDC27Q2M243 656 aa14.69□□□□□ -0.06
CCDC88A-207ENST00000436346 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.69□□□□□ -0.06
CCDC88A-207ENST00000436346 DIAPH1O60610 1272 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-207ENST00000436346 CUL7Q14999 1698 aa14.68□□□□□ -0.06
CCDC88A-207ENST00000436346 WASHC2AQ641Q2 1341 aa14.68□□□□□ -0.06
CCDC88A-207ENST00000436346 RIPK4P57078 832 aa14.68□□□□□ -0.06
CCDC88A-207ENST00000436346 CPLX2Q6PUV4 134 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-207ENST00000436346 IPO9Q96P70 1041 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-207ENST00000436346 NLRP2Q9NX02 1062 aa14.67□□□□□ -0.06
CCDC88A-207ENST00000436346 HMOX1P09601 288 aa14.67□□□□□ -0.06
CCDC88A-207ENST00000436346 EPS15P42566 896 aa14.67□□□□□ -0.06
CCDC88A-207ENST00000436346 RAPGEF4Q8WZA2 1011 aa14.67□□□□□ -0.06
CCDC88A-207ENST00000436346 TSPYL4Q9UJ04 414 aa14.67□□□□□ -0.06
CCDC88A-207ENST00000436346 RNF20Q5VTR2 975 aa14.66□□□□□ -0.06
CCDC88A-207ENST00000436346 NINLQ9Y2I6 1382 aa14.66□□□□□ -0.06
CCDC88A-207ENST00000436346 EHBP1L1Q8N3D4 1523 aa14.66□□□□□ -0.06
CCDC88A-207ENST00000436346 IPO7O95373 1038 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-207ENST00000436346 AIMP1Q12904 312 aaKnown RBP14.66□□□□□ -0.06
CCDC88A-207ENST00000436346 SYNJ2O15056 1496 aa14.66□□□□□ -0.06
CCDC88A-207ENST00000436346 TSPOAP1O95153 1857 aa14.66□□□□□ -0.06
CCDC88A-207ENST00000436346 GPRASP1Q5JY77 1395 aa14.66□□□□□ -0.06
CCDC88A-207ENST00000436346 RUSC2Q8N2Y8 1516 aa14.66□□□□□ -0.06
CCDC88A-207ENST00000436346 KIF6Q6ZMV9 814 aa14.66□□□□□ -0.06
CCDC88A-207ENST00000436346 DHX57Q6P158 1386 aaKnown RBP14.65□□□□□ -0.06
CCDC88A-207ENST00000436346 DDX19BQ9UMR2 479 aa14.65□□□□□ -0.06
CCDC88A-207ENST00000436346 RIC3Q7Z5B4 369 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms