RNA–Protein interactions for RNA: ENST00000412145.5

PTPN3-203, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,765 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-203ENST00000412145 SAFB2Q14151 953 aaKnown RBP eCLIP8.94□□□□□ -0.98
PTPN3-203ENST00000412145 CCDC73Q6ZRK6 1079 aa8.94□□□□□ -0.98
PTPN3-203ENST00000412145 CUX2O14529 1486 aa8.94□□□□□ -0.98
PTPN3-203ENST00000412145 OLFM4Q6UX06 510 aa8.94□□□□□ -0.98
PTPN3-203ENST00000412145 STK26Q9P289 416 aa8.94□□□□□ -0.98
PTPN3-203ENST00000412145 U2AF1L5P0DN76 240 aaPredicted RBP8.94□□□□□ -0.98
PTPN3-203ENST00000412145 U2AF1Q01081 240 aaKnown RBP eCLIP8.94□□□□□ -0.98
PTPN3-203ENST00000412145 TRDNQ13061 729 aa8.94□□□□□ -0.98
PTPN3-203ENST00000412145 SASS6Q6UVJ0 657 aa8.94□□□□□ -0.98
PTPN3-203ENST00000412145 PCMTD1Q96MG8 357 aaPredicted RBP8.94□□□□□ -0.98
PTPN3-203ENST00000412145 CTDP1Q9Y5B0 961 aaPredicted RBP8.94□□□□□ -0.98
PTPN3-203ENST00000412145 MBD3O95983 291 aa8.93□□□□□ -0.98
PTPN3-203ENST00000412145 HMGB1P09429 215 aaKnown RBP8.93□□□□□ -0.98
PTPN3-203ENST00000412145 HMGB2P26583 209 aaKnown RBP8.93□□□□□ -0.98
PTPN3-203ENST00000412145 EIF3JO75822 258 aaKnown RBP8.93□□□□□ -0.98
PTPN3-203ENST00000412145 TDRD9Q8NDG6 1382 aaKnown RBP8.93□□□□□ -0.98
PTPN3-203ENST00000412145 DCAF11Q8TEB1 546 aa8.93□□□□□ -0.98
PTPN3-203ENST00000412145 R3HCC1Q9Y3T6 440 aaKnown RBP8.93□□□□□ -0.98
PTPN3-203ENST00000412145 CCDC9Q9Y3X0 531 aaKnown RBP8.93□□□□□ -0.98
PTPN3-203ENST00000412145 CPLX1O14810 134 aa8.93□□□□□ -0.98
PTPN3-203ENST00000412145 FANCIQ9NVI1 1328 aa8.93□□□□□ -0.98
PTPN3-203ENST00000412145 KIAA0754O94854 1291 aa8.93□□□□□ -0.98
PTPN3-203ENST00000412145 ERLIN1O75477 346 aa8.93□□□□□ -0.98
PTPN3-203ENST00000412145 MCM2P49736 904 aa8.93□□□□□ -0.98
PTPN3-203ENST00000412145 PDCP20941 246 aa8.92□□□□□ -0.98
PTPN3-203ENST00000412145 ERICH2A1L162 156 aa8.92□□□□□ -0.98
PTPN3-203ENST00000412145 CREBRFQ8IUR6 639 aa8.92□□□□□ -0.98
PTPN3-203ENST00000412145 E9PSI1 815 aa8.92□□□□□ -0.98
PTPN3-203ENST00000412145 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.92□□□□□ -0.98
PTPN3-203ENST00000412145 CHMP5Q9NZZ3 219 aa8.92□□□□□ -0.98
PTPN3-203ENST00000412145 EPS15P42566 896 aa8.92□□□□□ -0.98
PTPN3-203ENST00000412145 SPRYD3Q8NCJ5 442 aa8.92□□□□□ -0.98
PTPN3-203ENST00000412145 PDCL2Q8N4E4 241 aa8.91□□□□□ -0.98
PTPN3-203ENST00000412145 DESP17661 470 aa8.91□□□□□ -0.98
PTPN3-203ENST00000412145 STAC3Q96MF2 364 aa8.91□□□□□ -0.98
PTPN3-203ENST00000412145 DDX19BQ9UMR2 479 aa8.91□□□□□ -0.98
PTPN3-203ENST00000412145 SOGA1O94964 1423 aa8.91□□□□□ -0.98
PTPN3-203ENST00000412145 PAK3O75914 559 aaPredicted RBP8.91□□□□□ -0.98
PTPN3-203ENST00000412145 NINLQ9Y2I6 1382 aa8.91□□□□□ -0.98
PTPN3-203ENST00000412145 FAM107BQ9H098 131 aa8.91□□□□□ -0.98
PTPN3-203ENST00000412145 SENP3-EIF4A1A0A087X0R7 540 aa8.91□□□□□ -0.98
PTPN3-203ENST00000412145 HMGB1P1B2RPK0 211 aaPredicted RBP8.91□□□□□ -0.98
PTPN3-203ENST00000412145 EFCAB2Q5VUJ9 269 aa8.91□□□□□ -0.98
PTPN3-203ENST00000412145 ERC2O15083 957 aa8.91□□□□□ -0.98
PTPN3-203ENST00000412145 MRE11P49959 708 aa8.91□□□□□ -0.98
PTPN3-203ENST00000412145 DNAI2Q9GZS0 605 aa8.91□□□□□ -0.98
PTPN3-203ENST00000412145 VPS8Q8N3P4 1428 aa8.91□□□□□ -0.98
PTPN3-203ENST00000412145 SCAPERQ9BY12 1400 aa8.9□□□□□ -0.98
PTPN3-203ENST00000412145 VSIG10Q8N0Z9 540 aa8.9□□□□□ -0.98
PTPN3-203ENST00000412145 NEFHP12036 1026 aa8.9□□□□□ -0.98
PTPN3-203ENST00000412145 CCDC18Q5T9S5 1454 aa8.9□□□□□ -0.98
PTPN3-203ENST00000412145 FRAT2O75474 233 aaPredicted RBP8.9□□□□□ -0.98
PTPN3-203ENST00000412145 NF2P35240 595 aa8.9□□□□□ -0.98
PTPN3-203ENST00000412145 POLR3GO15318 223 aaPredicted RBP8.9□□□□□ -0.98
PTPN3-203ENST00000412145 CHMP3Q9Y3E7 222 aa8.9□□□□□ -0.98
PTPN3-203ENST00000412145 OFD1O75665 1012 aa8.9□□□□□ -0.98
PTPN3-203ENST00000412145 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.9□□□□□ -0.99
PTPN3-203ENST00000412145 PSMA5P28066 241 aa8.9□□□□□ -0.99
PTPN3-203ENST00000412145 DACH1Q9UI36 760 aa8.9□□□□□ -0.99
PTPN3-203ENST00000412145 MYBBP1AQ9BQG0 1328 aaKnown RBP8.9□□□□□ -0.99
PTPN3-203ENST00000412145 CSB-PGBD3P0DP91 1061 aa8.89□□□□□ -0.99
PTPN3-203ENST00000412145 WWC2Q6AWC2 1192 aa8.89□□□□□ -0.99
PTPN3-203ENST00000412145 TOMM22Q9NS69 142 aa8.89□□□□□ -0.99
PTPN3-203ENST00000412145 PATL2C9JE40 543 aaKnown RBP8.89□□□□□ -0.99
PTPN3-203ENST00000412145 DHX16O60231 1041 aaKnown RBP8.89□□□□□ -0.99
PTPN3-203ENST00000412145 HSP90AB2PQ58FF8 381 aa8.89□□□□□ -0.99
PTPN3-203ENST00000412145 ZKSCAN2Q63HK3 967 aa8.89□□□□□ -0.99
PTPN3-203ENST00000412145 KIF2AO00139 706 aaPredicted RBP8.89□□□□□ -0.99
PTPN3-203ENST00000412145 HIP1O00291 1037 aa8.89□□□□□ -0.99
PTPN3-203ENST00000412145 FILIP1LQ4L180 1135 aa8.89□□□□□ -0.99
PTPN3-203ENST00000412145 DEF6Q9H4E7 631 aa8.89□□□□□ -0.99
PTPN3-203ENST00000412145 DDX58O95786 925 aaKnown RBP8.89□□□□□ -0.99
PTPN3-203ENST00000412145 INTS3Q68E01 1043 aaKnown RBP8.89□□□□□ -0.99
PTPN3-203ENST00000412145 JMYQ8N9B5 988 aa8.89□□□□□ -0.99
PTPN3-203ENST00000412145 CNKSR2Q8WXI2 1034 aa8.89□□□□□ -0.99
PTPN3-203ENST00000412145 PKNOX2Q96KN3 472 aa8.89□□□□□ -0.99
PTPN3-203ENST00000412145 MCM3P25205 808 aa8.88□□□□□ -0.99
PTPN3-203ENST00000412145 TXLNAP40222 546 aa8.88□□□□□ -0.99
PTPN3-203ENST00000412145 OSCARQ8IYS5 282 aa8.88□□□□□ -0.99
PTPN3-203ENST00000412145 IL27Q8NEV9 243 aa8.88□□□□□ -0.99
PTPN3-203ENST00000412145 API5Q9BZZ5 524 aaKnown RBP8.88□□□□□ -0.99
PTPN3-203ENST00000412145 TRIM21P19474 475 aaKnown RBP8.88□□□□□ -0.99
PTPN3-203ENST00000412145 ZBED9Q6R2W3 1325 aa8.88□□□□□ -0.99
PTPN3-203ENST00000412145 DYDC1Q8WWB3 177 aa8.88□□□□□ -0.99
PTPN3-203ENST00000412145 IFT57Q9NWB7 429 aa8.88□□□□□ -0.99
PTPN3-203ENST00000412145 KIF3BO15066 747 aa8.87□□□□□ -0.99
PTPN3-203ENST00000412145 BICD2Q8TD16 824 aa8.87□□□□□ -0.99
PTPN3-203ENST00000412145 ZNHIT6Q9NWK9 470 aaKnown RBP8.87□□□□□ -0.99
PTPN3-203ENST00000412145 EID1Q9Y6B2 187 aa8.87□□□□□ -0.99
PTPN3-203ENST00000412145 JPH4Q96JJ6 628 aa8.87□□□□□ -0.99
PTPN3-203ENST00000412145 ZNF592Q92610 1267 aa8.87□□□□□ -0.99
PTPN3-203ENST00000412145 GTF2E1P29083 439 aaPredicted RBP8.87□□□□□ -0.99
PTPN3-203ENST00000412145 SART3Q15020 963 aaKnown RBP8.87□□□□□ -0.99
PTPN3-203ENST00000412145 NAP1L1P55209 391 aaKnown RBP8.86□□□□□ -0.99
PTPN3-203ENST00000412145 SLC26A8Q96RN1 970 aa8.86□□□□□ -0.99
PTPN3-203ENST00000412145 SYCP1Q15431 976 aa8.86□□□□□ -0.99
PTPN3-203ENST00000412145 MCTP1Q6DN14 999 aa8.86□□□□□ -0.99
PTPN3-203ENST00000412145 SEPT7Q16181 437 aaKnown RBP8.86□□□□□ -0.99
PTPN3-203ENST00000412145 GBP3Q9H0R5 595 aa8.86□□□□□ -0.99
PTPN3-203ENST00000412145 GBP2P32456 591 aaPredicted RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms