RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 PLEKHG1Q9ULL1 1385 aa29.55■■■□□ 2.32
TSPAN4-209ENST00000409543 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.55■■■□□ 2.32
TSPAN4-209ENST00000409543 PPP1R15AO75807 674 aaPredicted RBP29.54■■■□□ 2.32
TSPAN4-209ENST00000409543 BCANQ96GW7 911 aa29.54■■■□□ 2.32
TSPAN4-209ENST00000409543 SPHKAPQ2M3C7 1700 aa29.54■■■□□ 2.32
TSPAN4-209ENST00000409543 KCNA6P17658 529 aa29.53■■■□□ 2.32
TSPAN4-209ENST00000409543 PIP4K2BP78356 416 aa29.51■■■□□ 2.31
TSPAN4-209ENST00000409543 TRIM52Q96A61 297 aa29.5■■■□□ 2.31
TSPAN4-209ENST00000409543 SCAF1Q9H7N4 1312 aaKnown RBP29.49■■■□□ 2.31
TSPAN4-209ENST00000409543 ALKQ9UM73 1620 aa29.48■■■□□ 2.31
TSPAN4-209ENST00000409543 SENP3Q9H4L4 574 aaPredicted RBP29.45■■■□□ 2.31
TSPAN4-209ENST00000409543 TBX22Q9Y458 520 aa29.45■■■□□ 2.31
TSPAN4-209ENST00000409543 XIRP1Q702N8 1843 aaKnown RBP29.44■■■□□ 2.3
TSPAN4-209ENST00000409543 NUTM2DQ5VT03 806 aaPredicted RBP29.44■■■□□ 2.3
TSPAN4-209ENST00000409543 TRPM2O94759 1503 aa29.44■■■□□ 2.3
TSPAN4-209ENST00000409543 NWD1Q149M9 1564 aa29.43■■■□□ 2.3
TSPAN4-209ENST00000409543 SLC4A1APQ9BWU0 796 aaKnown RBP29.42■■■□□ 2.3
TSPAN4-209ENST00000409543 PROSER2Q86WR7 435 aaPredicted RBP29.41■■■□□ 2.3
TSPAN4-209ENST00000409543 NKTRP30414 1462 aaKnown RBP29.41■■■□□ 2.3
TSPAN4-209ENST00000409543 TMEM94Q12767 1356 aa29.4■■■□□ 2.3
TSPAN4-209ENST00000409543 CLTCL1P53675 1640 aa29.4■■■□□ 2.3
TSPAN4-209ENST00000409543 ADAMTS13Q76LX8 1427 aa29.39■■■□□ 2.3
TSPAN4-209ENST00000409543 HSPA1LP34931 641 aa29.39■■■□□ 2.3
TSPAN4-209ENST00000409543 CHD2O14647 1828 aaKnown RBP29.38■■■□□ 2.29
TSPAN4-209ENST00000409543 ZNF326Q5BKZ1 582 aaKnown RBP29.37■■■□□ 2.29
TSPAN4-209ENST00000409543 DIP2AQ14689 1571 aa29.37■■■□□ 2.29
TSPAN4-209ENST00000409543 PIK3R4Q99570 1358 aa29.34■■■□□ 2.29
TSPAN4-209ENST00000409543 KIF1BO60333 1816 aa29.32■■■□□ 2.28
TSPAN4-209ENST00000409543 RBM33Q96EV2 1170 aaKnown RBP29.32■■■□□ 2.28
TSPAN4-209ENST00000409543 DISP3Q9P2K9 1392 aa29.31■■■□□ 2.28
TSPAN4-209ENST00000409543 ACIN1Q9UKV3 1341 aaKnown RBP29.29■■■□□ 2.28
TSPAN4-209ENST00000409543 SETBP1Q9Y6X0 1596 aa29.28■■■□□ 2.28
TSPAN4-209ENST00000409543 NEXMIFQ5QGS0 1516 aa29.28■■■□□ 2.28
TSPAN4-209ENST00000409543 MPHOSPH9Q99550 1183 aa29.27■■■□□ 2.28
TSPAN4-209ENST00000409543 NRXN3Q9Y4C0 1643 aa29.26■■■□□ 2.27
TSPAN4-209ENST00000409543 FOXD1Q16676 465 aa29.25■■■□□ 2.27
TSPAN4-209ENST00000409543 SETD5Q9C0A6 1442 aa29.25■■■□□ 2.27
TSPAN4-209ENST00000409543 NCOA3Q9Y6Q9 1424 aa29.25■■■□□ 2.27
TSPAN4-209ENST00000409543 MSH6P52701 1360 aa29.25■■■□□ 2.27
TSPAN4-209ENST00000409543 FAM135BQ49AJ0 1406 aa29.23■■■□□ 2.27
TSPAN4-209ENST00000409543 AMOTL2Q9Y2J4 779 aa29.22■■■□□ 2.27
TSPAN4-209ENST00000409543 PTPRUQ92729 1446 aa29.21■■■□□ 2.27
TSPAN4-209ENST00000409543 RPGRIP1LQ68CZ1 1315 aa29.2■■■□□ 2.27
TSPAN4-209ENST00000409543 VGFO15240 615 aaPredicted RBP29.19■■■□□ 2.26
TSPAN4-209ENST00000409543 METP08581 1390 aa29.16■■■□□ 2.26
TSPAN4-209ENST00000409543 CCDC144AA2RUR9 1427 aa29.16■■■□□ 2.26
TSPAN4-209ENST00000409543 C14orf37Q86TY3 774 aa29.15■■■□□ 2.26
TSPAN4-209ENST00000409543 SLAIN2Q9P270 581 aa29.15■■■□□ 2.26
TSPAN4-209ENST00000409543 XRN1Q8IZH2 1706 aaKnown RBP29.14■■■□□ 2.25
TSPAN4-209ENST00000409543 C19orf44Q9H6X5 657 aa29.13■■■□□ 2.25
TSPAN4-209ENST00000409543 RAB3GAP2Q9H2M9 1393 aa29.13■■■□□ 2.25
TSPAN4-209ENST00000409543 ROBO1Q9Y6N7 1651 aa29.12■■■□□ 2.25
TSPAN4-209ENST00000409543 PPLO60437 1756 aa29.11■■■□□ 2.25
TSPAN4-209ENST00000409543 MED1Q15648 1581 aaPredicted RBP29.09■■■□□ 2.25
TSPAN4-209ENST00000409543 ILDR2Q71H61 639 aa29.08■■■□□ 2.25
TSPAN4-209ENST00000409543 CADPS2Q86UW7 1296 aa29.08■■■□□ 2.25
TSPAN4-209ENST00000409543 SPATA31E1Q6ZUB1 1445 aa29.08■■■□□ 2.25
TSPAN4-209ENST00000409543 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.08■■■□□ 2.25
TSPAN4-209ENST00000409543 ATF3P18847 181 aa29.06■■■□□ 2.24
TSPAN4-209ENST00000409543 RGL3Q3MIN7 710 aa29.04■■■□□ 2.24
TSPAN4-209ENST00000409543 SETD1AO15047 1707 aaKnown RBP29.03■■■□□ 2.24
TSPAN4-209ENST00000409543 DCCP43146 1447 aa29.02■■■□□ 2.24
TSPAN4-209ENST00000409543 HRCP23327 699 aa29.01■■■□□ 2.23
TSPAN4-209ENST00000409543 ANKRD30BQ9BXX2 1392 aa29.01■■■□□ 2.23
TSPAN4-209ENST00000409543 ADGRF5Q8IZF2 1346 aa28.98■■■□□ 2.23
TSPAN4-209ENST00000409543 IFT172Q9UG01 1749 aa28.97■■■□□ 2.23
TSPAN4-209ENST00000409543 PTCH1Q13635 1447 aa28.95■■■□□ 2.23
TSPAN4-209ENST00000409543 PRAG1Q86YV5 1406 aa28.95■■■□□ 2.23
TSPAN4-209ENST00000409543 ADGRL3Q9HAR2 1447 aa28.94■■■□□ 2.22
TSPAN4-209ENST00000409543 PHLPP1O60346 1717 aa28.94■■■□□ 2.22
TSPAN4-209ENST00000409543 ROBO2Q9HCK4 1378 aa28.92■■■□□ 2.22
TSPAN4-209ENST00000409543 PHF23Q9BUL5 403 aaPredicted RBP28.91■■■□□ 2.22
TSPAN4-209ENST00000409543 NALCNQ8IZF0 1738 aa28.89■■■□□ 2.22
TSPAN4-209ENST00000409543 MST1RQ04912 1400 aa28.89■■■□□ 2.22
TSPAN4-209ENST00000409543 BRINP3Q76B58 766 aa28.89■■■□□ 2.22
TSPAN4-209ENST00000409543 PIK3C2GO75747 1445 aa28.88■■■□□ 2.21
TSPAN4-209ENST00000409543 AHDC1Q5TGY3 1603 aaPredicted RBP28.87■■■□□ 2.21
TSPAN4-209ENST00000409543 COL16A1Q07092 1604 aaPredicted RBP28.87■■■□□ 2.21
TSPAN4-209ENST00000409543 JCADQ9P266 1359 aa28.86■■■□□ 2.21
TSPAN4-209ENST00000409543 SOCS7O14512 581 aa28.85■■■□□ 2.21
TSPAN4-209ENST00000409543 MYOM2P54296 1465 aa28.83■■■□□ 2.21
TSPAN4-209ENST00000409543 LRPPRCP42704 1394 aaKnown RBP28.82■■■□□ 2.2
TSPAN4-209ENST00000409543 NRXN1Q9ULB1 1477 aa28.82■■■□□ 2.2
TSPAN4-209ENST00000409543 ASXL1Q8IXJ9 1541 aa28.82■■■□□ 2.2
TSPAN4-209ENST00000409543 TECPR2O15040 1411 aa28.81■■■□□ 2.2
TSPAN4-209ENST00000409543 TMEM132EQ6IEE7 984 aa28.8■■■□□ 2.2
TSPAN4-209ENST00000409543 C14orf93Q9H972 538 aaKnown RBP28.8■■■□□ 2.2
TSPAN4-209ENST00000409543 STK26Q9P289 416 aa28.8■■■□□ 2.2
TSPAN4-209ENST00000409543 ABCC11Q96J66 1382 aa28.79■■■□□ 2.2
TSPAN4-209ENST00000409543 C1orf167Q5SNV9 1468 aa28.77■■■□□ 2.2
TSPAN4-209ENST00000409543 RGS17Q9UGC6 210 aaPredicted RBP28.75■■■□□ 2.19
TSPAN4-209ENST00000409543 YTHDC2Q9H6S0 1430 aaKnown RBP28.75■■■□□ 2.19
TSPAN4-209ENST00000409543 KNDC1Q76NI1 1749 aa28.74■■■□□ 2.19
TSPAN4-209ENST00000409543 NHSL1Q5SYE7 1610 aa28.74■■■□□ 2.19
TSPAN4-209ENST00000409543 CFAP70Q5T0N1 1121 aa28.74■■■□□ 2.19
TSPAN4-209ENST00000409543 SPATA31A6Q5VVP1 1343 aa28.73■■■□□ 2.19
TSPAN4-209ENST00000409543 LAMC1P11047 1609 aa28.73■■■□□ 2.19
TSPAN4-209ENST00000409543 WAPLQ7Z5K2 1190 aa28.73■■■□□ 2.19
TSPAN4-209ENST00000409543 SHPRHQ149N8 1683 aa28.71■■■□□ 2.19
TSPAN4-209ENST00000409543 SIRT1Q96EB6 747 aa28.71■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms